View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1750_high_11 (Length: 306)
Name: NF1750_high_11
Description: NF1750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1750_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 300
Target Start/End: Original strand, 52404827 - 52405111
Alignment:
| Q |
12 |
agtgctttcccctgataagagagattgaaaaattagcagagattaaaatagcatacaaatataacattactatagatgcatacaaatattaaaagaattc |
111 |
Q |
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| T |
52404827 |
agtgcttttccctgataatagagattgcaaagttagcagagattaaaggagcatacaaatataacattactatagatgcatacaaatattaaaagaattc |
52404926 |
T |
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| Q |
112 |
aattgattttttcaagtatacaaagaaaagtaaaactcacttcgacaatatatatttgaaccagacaagttgacattcctccacaaccagagtacaaatc |
211 |
Q |
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| T |
52404927 |
aattgattttttcaagtatacaaagaaaagtaaaacccacttcgaca----atatttgaaccagacaagttgacattcctccacagccagagtataaatc |
52405022 |
T |
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| Q |
212 |
cagcaactttagctctggttttttcttttcttcactagtatcagtgtttgcactattagagtcatcctcagatcttccattcacttcat |
300 |
Q |
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| T |
52405023 |
tagcaactttagctctggttttttcttttcatcactagtatcagtgtttgcacttttagagtcaacctcagatcttccattcacttcat |
52405111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 40716871 - 40716940
Alignment:
| Q |
230 |
ttttttcttttcttcactagtatcagtgtttgcactattagagtcatcctcagatcttccattcacttca |
299 |
Q |
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| T |
40716871 |
ttttttcttttcatcactagtataagtgtttgcacttttagagtcaacctcggatcttccattcacttca |
40716940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 52415596 - 52415661
Alignment:
| Q |
15 |
gctttcccctgataagagagattgaaaaattagcagagattaaaatagcatacaaatataacatta |
80 |
Q |
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| T |
52415596 |
gcttttccctggtaatagagattgcaaagttagcagagattaaaagaacatataaaaataacatta |
52415661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 179 - 299
Target Start/End: Complemental strand, 28214799 - 28214679
Alignment:
| Q |
179 |
agttgacattcctccacaaccagagtacaaatccagcaactttagctctggttttttcttttcttcactagtatcagtgtttgcactattagagtcatcc |
278 |
Q |
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| T |
28214799 |
agttgacattcctccacaaccagagtacaaatctagcaacttcagctctggttttttcttatcatcattaatatcagtgattgcacttttagagtcaacc |
28214700 |
T |
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| Q |
279 |
tcagatcttccattcacttca |
299 |
Q |
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| T |
28214699 |
tcagattttgcatttacttca |
28214679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 31491268 - 31491212
Alignment:
| Q |
179 |
agttgacattcctccacaaccagagtacaaatccagcaactttagctctggtttttt |
235 |
Q |
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| T |
31491268 |
agttgacatcccaccgcaaccagaatacaagtctagcaacttcagctctggtttttt |
31491212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 299
Target Start/End: Original strand, 33853079 - 33853195
Alignment:
| Q |
183 |
gacattcctccacaaccagagtacaaatccagcaactttagctctggttttttcttttcttcactagtatcagtgtttgcactattagagtcatcctcag |
282 |
Q |
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||||||||||| ||||||||||||||||| |||||||| | || ||| ||||||||||| ||| | |||||||||||| || ||||| ||| |||||| |
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| T |
33853079 |
gacattcctccgcaaccagagtacaaatctagcaacttcatctgtggctttttcttttcaacacaaatatcagtgtttgaacatttagaatcaacctcag |
33853178 |
T |
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| Q |
283 |
atcttccattcacttca |
299 |
Q |
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| T |
33853179 |
cttttccattcccttca |
33853195 |
T |
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