View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1750_high_20 (Length: 223)
Name: NF1750_high_20
Description: NF1750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1750_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 32993955 - 32994151
Alignment:
| Q |
14 |
aatatgataaagaaaaatatttcatgaacactcgatatctattttactctttgaaaaataaaagaatagaaaatatgatatgatatgttagtgatgtggt |
113 |
Q |
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| T |
32993955 |
aatatgataaagaaaaatatttcatggacactcaatatctattttactctttgaaagataaaagaatagaaaatatgatatgatatgttagtgatgtggt |
32994054 |
T |
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| Q |
114 |
gagaaaagagatatagtgaaagcaaatcatataaataatagta--nnnnnnnnncaagaagaaataaataatagtatgttttataagcgtatttttt |
208 |
Q |
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| T |
32994055 |
gagaaaagagatatagtgaaagcaaatcatataaataatagtattttttttttttttgaagaaataaataatagtatgttttataagcgtatttttt |
32994151 |
T |
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