View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1750_high_5 (Length: 412)
Name: NF1750_high_5
Description: NF1750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1750_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 186 - 354
Target Start/End: Complemental strand, 6963513 - 6963343
Alignment:
| Q |
186 |
tgacggcccaagcatgctatgaaatcttcctcgatttccttcct--caaaagctgatcagataatttcgatttttcgatcttattactattaatattact |
283 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||| ||||| ||| |||| ||||||| | |||| |||||||| ||||||||| || | |
|
|
| T |
6963513 |
tgacggcccagccatgccatgaaatcttcctcgatttccttccttgaaaaaggtgaacagaaaatttcggtctttcaatcttattgctattaataataat |
6963414 |
T |
|
| Q |
284 |
tctcaacctggatgaaacattattgccgccaccaattctcgtaggagaagtgaaatcacgtttcgcattac |
354 |
Q |
| |
|
||||| | | || |||||||||| ||| | |||||||||| |||||| |||||||| ||||| |||||| |
|
|
| T |
6963413 |
tctcagcgttgacgaaacattatcgccactgtcaattctcgtcggagaaatgaaatcatgtttcacattac |
6963343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 6963110 - 6963069
Alignment:
| Q |
18 |
catctaaggcggcgttgagttccccacttcaagtttgaaatg |
59 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6963110 |
catctaaggcggcgttgagttccccacttcaagtttgaaatg |
6963069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 292
Target Start/End: Original strand, 23128138 - 23128226
Alignment:
| Q |
204 |
atgaaatcttcctcgatttccttcctcaaaagctgatcagataatttcgatttttcgatcttattactattaatattacttctcaacct |
292 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||| ||| ||||||| | |||| | || |||||| |||||||||||||||||| |
|
|
| T |
23128138 |
atgaaatcttcatcgatttccttcctcaagagctgaagagaaaatttcggtgtttcaacctcgttactaggaatattacttctcaacct |
23128226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 23096422 - 23096491
Alignment:
| Q |
206 |
gaaatcttcctcgatttccttcctcaaaagctgatcagataatttcgatttttcgatcttattactatta |
275 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||| |||| |||||| | |||| ||||||||| ||||| |
|
|
| T |
23096422 |
gaaatcttcctcgatttccttcgttaaaagctgaacagaaaatttccttctttcaatcttattattatta |
23096491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University