View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1750_high_6 (Length: 411)
Name: NF1750_high_6
Description: NF1750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1750_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 9213824 - 9214207
Alignment:
| Q |
1 |
cgagtcaacgacatcacgtagaaccattcagcatcgccgtttgtacatgtgttactgtcgtttggtttgtttgaagttgttgtttctttggttccttgaa |
100 |
Q |
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| T |
9213824 |
cgagtcaacgacatcacatagaaccattcagcatctttgtttgcacacgtgttactgtcgttttgtttgtttgaatttgttgtttctttggttccttgaa |
9213923 |
T |
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| Q |
101 |
aatagccttcaccccaagataagaaaggttcacctttttcatcttttgttgtttgccataaaatagcatagacccaattttcagattgggtttggagtaa |
200 |
Q |
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| T |
9213924 |
aatagccttcaccccaagataagagaggtttacctttttcatcttttgttgtttgccataaaatagcatagacccaattttcggattgggtttggactag |
9214023 |
T |
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| Q |
201 |
aaattgaagtttttgttgaagggatggtgtttgtggtgaaggg------ttttcgtgagcaattgatatcatagaggaagatgaagaaggtgacatgatg |
294 |
Q |
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| T |
9214024 |
aaattgaagtttttgttgaagggttagggtttgtggtgaagggttttcattttcatgaggaagtgatattatagaggaagatgaagaaggtgacatgatg |
9214123 |
T |
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| Q |
295 |
aaatcttccatatttgtatagtattggaagagaataaagagatgattgatgatgtgattggacaggatggagaaaaggaaacaagag |
381 |
Q |
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| T |
9214124 |
aaattttccttatctgtgtagtataggtagagaataaagagatgattgatga---gattggagaagttggagaaaaggaaacaagag |
9214207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 66 - 253
Target Start/End: Complemental strand, 9194168 - 9193981
Alignment:
| Q |
66 |
tttgtttgaagttgttgtttctttggttccttgaaaatagccttcaccccaagataagaaaggttcacctttttcatcttttgttgtttgccataaaata |
165 |
Q |
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| T |
9194168 |
tttgtttgaagttgttgtttctttggttccttgaaaatagccttcaccccaagataagaaaggtttacctttttcatcttttgttgtttgccacaaaatg |
9194069 |
T |
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| Q |
166 |
gcatagacccaattttcagattgggtttggagtaaaaattgaagtttttgttgaagggatggtgtttgtggtgaagggttttcgtgag |
253 |
Q |
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| T |
9194068 |
ccatagatccaattttcggattggatttggagtagaaattgaagcttttgttgaagggttggtgtttgtgatgaagggttttcatgag |
9193981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 9194203 - 9194169
Alignment:
| Q |
1 |
cgagtcaacgacatcacgtagaaccattcagcatc |
35 |
Q |
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| T |
9194203 |
cgagttaacgacatcacgtagaaccattcagcatc |
9194169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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