View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1750_low_11 (Length: 336)
Name: NF1750_low_11
Description: NF1750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1750_low_11 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 11 - 336
Target Start/End: Complemental strand, 27801704 - 27801378
Alignment:
| Q |
11 |
cataggatattccaaggaatgaggagaagaaacttctcaccagctga-ggaacggcttcattgtcacgtctgaatatagtaccagtagcacatagggtaa |
109 |
Q |
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| T |
27801704 |
cataggatattccaaggaatgaggagaagaaacttctcaccagctgaaggaacggcttcattgtcacgtctgaatatagtaccagtagcacatagggtaa |
27801605 |
T |
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| Q |
110 |
gttggcgattcaagaacagcttgtcaatggactcatcatctcactgcacaaaatagaaaagtgattaaaaactatggagtgtaaaagcgtgtaatgcaac |
209 |
Q |
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| T |
27801604 |
gttggcgattcaagaacagcttgtcaatggactcatcatctcactgcacaaaatagaaaagtgattaaaaactatggagtgtaaaagcgtgtaatgcaac |
27801505 |
T |
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| Q |
210 |
gttggtgtaaaattattttctattggaaaaaatggtaaaaccggacagatttgaaaacccaactacatagtgccaaaaggccactaaagccaagaataat |
309 |
Q |
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| T |
27801504 |
gttggtgtaaaattattttctattggaaaaaatggtaaaatcggacagatttgaaaacccaactacatagtgccaaaaggccactaaagccaagaataat |
27801405 |
T |
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| Q |
310 |
ttggagagatgaagaaactataagggc |
336 |
Q |
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| T |
27801404 |
ttggagagatgaagaaactataagggc |
27801378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 27770861 - 27770799
Alignment:
| Q |
21 |
tccaaggaatgaggagaagaaacttctcaccagctgaggaacggcttcattgtcacgtctgaa |
83 |
Q |
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| T |
27770861 |
tccaaggaatgatgtgaagcaacttctcaccagctgagcaacggattcattgttatgtctgaa |
27770799 |
T |
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