View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1750_low_13 (Length: 316)

Name: NF1750_low_13
Description: NF1750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1750_low_13
NF1750_low_13
[»] chr3 (8 HSPs)
chr3 (13-294)||(26665074-26665355)
chr3 (128-288)||(24204994-24205156)
chr3 (166-237)||(25365457-25365528)
chr3 (173-231)||(12704657-12704715)
chr3 (173-234)||(25074787-25074848)
chr3 (211-251)||(14223891-14223931)
chr3 (166-234)||(15864831-15864899)
chr3 (173-233)||(52369774-52369834)
[»] chr5 (5 HSPs)
chr5 (175-248)||(18607099-18607172)
chr5 (212-288)||(6301418-6301494)
chr5 (111-163)||(27932306-27932358)
chr5 (211-270)||(19579663-19579722)
chr5 (205-250)||(18288083-18288128)
[»] chr8 (8 HSPs)
chr8 (190-269)||(7658426-7658505)
chr8 (115-264)||(35431080-35431229)
chr8 (173-237)||(40063946-40064010)
chr8 (212-267)||(24362241-24362296)
chr8 (166-269)||(39820392-39820495)
chr8 (205-288)||(44067460-44067543)
chr8 (176-246)||(3658133-3658203)
chr8 (214-267)||(4673466-4673519)
[»] chr6 (6 HSPs)
chr6 (206-269)||(7625085-7625148)
chr6 (173-232)||(34446565-34446624)
chr6 (211-269)||(25096386-25096444)
chr6 (166-232)||(12235512-12235578)
chr6 (173-234)||(6389741-6389802)
chr6 (173-233)||(12086345-12086405)
[»] chr4 (6 HSPs)
chr4 (173-288)||(24343451-24343566)
chr4 (185-234)||(20743290-20743339)
chr4 (190-245)||(32910538-32910593)
chr4 (185-251)||(7012047-7012113)
chr4 (173-234)||(16402211-16402272)
chr4 (114-163)||(17876237-17876286)
[»] chr7 (5 HSPs)
chr7 (176-289)||(22683758-22683869)
chr7 (214-269)||(11061117-11061172)
chr7 (211-251)||(4017832-4017872)
chr7 (185-237)||(7133290-7133342)
chr7 (185-233)||(23930218-23930266)
[»] chr2 (3 HSPs)
chr2 (173-245)||(11308004-11308075)
chr2 (173-237)||(25544476-25544540)
chr2 (186-239)||(10535772-10535825)
[»] chr1 (3 HSPs)
chr1 (185-237)||(40747785-40747837)
chr1 (173-232)||(21145466-21145526)
chr1 (185-237)||(42004959-42005011)
[»] scaffold0085 (1 HSPs)
scaffold0085 (185-251)||(25979-26045)
[»] scaffold0007 (1 HSPs)
scaffold0007 (205-275)||(225300-225370)
[»] scaffold0020 (1 HSPs)
scaffold0020 (211-267)||(135350-135406)


Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 294
Target Start/End: Complemental strand, 26665355 - 26665074
Alignment:
Q  13 attctccttaattaagatttgtgacacnnnnnnnatcactgctgcgttttaaaacattgaagtatgtacctcataaaaacttataccaagtcatgttatg 112  Q
    |||||||||||||||||||||||||||       ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26665355 attctccttaattaagatttgtgacacttttgttatcgctgctgcgttttaaaacattgaagtatgcacctcataaaaacttataccaagtcatgttatg 26665256  T
Q  113 tcctatgaagtacaaacactccttgaattaggggtgttctggtgtcggacat--ttcggtgcccgacacgacgtctatgattacagtgaatcacgtcata 210  Q
    ||||||   |||| |||||||||||||||||||||||||||||||||||||   ||||||| ||||||||||| |||| ||||||||||||||||||||     
T  26665255 tcctatt--gtacgaacactccttgaattaggggtgttctggtgtcggacacgcttcggtgtccgacacgacgcctataattacagtgaatcacgtcatt 26665158  T
Q  211 ttctcaaattattatccgtgtcggtgtatcggtgtctgtgttgtatccgatgtccgtgtatgtgtttatgcttcatagtataca 294  Q
    |||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26665157 ttctcaaattattatttgtgtcggtttatcggtgtctgtgttgtatccgatgtccgtgtatgtgtttatgcttcatagtataca 26665074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 128 - 288
Target Start/End: Original strand, 24204994 - 24205156
Alignment:
Q  128 acactccttgaattaggggtgttctggtgtcggacatt--tcggtgcccgacacgacgtctatgattacagtgaatcacgtcatattctcaaattattat 225  Q
    |||||||| |||||||| |||| |||||||||||||    || ||| ||||||||||   ||| |||||| || || | ||||| |||||||||||||||    
T  24204994 acactcctcgaattaggcgtgtcctggtgtcggacacgcgtcagtgtccgacacgacacttataattacactgtattatgtcattttctcaaattattat 24205093  T
Q  226 ccgtgtcggtgtatcggtgtctgtgttgtatccgatgtccgtgtatgtgtttatgcttcatag 288  Q
    ||||||||| || || ||||| |||| || |||| ||||||||| |||||   ||||||||||    
T  24205094 ccgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtctgtgtccgtgcttcatag 24205156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 237
Target Start/End: Complemental strand, 25365528 - 25365457
Alignment:
Q  166 tcggtgcccgacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcggtgt 237  Q
    |||||| ||||||||||   ||||||||||  |||| | ||||||||||||||||||||||| || ||||||    
T  25365528 tcggtgtccgacacgacacttatgattacaccgaattatgtcatattctcaaattattatccatgccggtgt 25365457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 12704657 - 12704715
Alignment:
Q  173 ccgacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgt 231  Q
    ||||||||||  ||||||||||| ||||| | ||||| || ||||||||||||||||||    
T  12704657 ccgacacgacacctatgattacattgaattatgtcattttttcaaattattatccgtgt 12704715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 25074848 - 25074787
Alignment:
Q  173 ccgacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcgg 234  Q
    ||||||| ||| ||||||||||| | ||| | ||||| |||||||||||||||| |||||||    
T  25074848 ccgacacaacgcctatgattacactcaattatgtcattttctcaaattattatcggtgtcgg 25074787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 14223891 - 14223931
Alignment:
Q  211 ttctcaaattattatccgtgtcggtgtatcggtgtctgtgt 251  Q
    |||||||||||||||| ||||||| || |||||||||||||    
T  14223891 ttctcaaattattatctgtgtcggcgtgtcggtgtctgtgt 14223931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 234
Target Start/End: Complemental strand, 15864899 - 15864831
Alignment:
Q  166 tcggtgcccgacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcgg 234  Q
    |||||| ||||||||||  ||||||||||| | ||| |  |||| || |||||||||||||||||||||    
T  15864899 tcggtgtccgacacgacacctatgattacactaaattatatcattttttcaaattattatccgtgtcgg 15864831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 52369834 - 52369774
Alignment:
Q  173 ccgacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcg 233  Q
    ||||||||||  ||||||||||| ||||| | || || ||||||||||||||||| |||||    
T  52369834 ccgacacgacacctatgattacattgaattatgtaattttctcaaattattatccatgtcg 52369774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 18607099 - 18607172
Alignment:
Q  175 gacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcggtgtatcggtgtctg 248  Q
    ||||||||  ||||||||||| ||||| | || || ||||||||||||||||| ||||||||||||||||||||    
T  18607099 gacacgacacctatgattacattgaattatgttattttctcaaattattatccatgtcggtgtatcggtgtctg 18607172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 288
Target Start/End: Original strand, 6301418 - 6301494
Alignment:
Q  212 tctcaaattattatccgtgtcggtgtatcggtgtctgtgttgtatccgatgtccgtgtatgtgtttatgcttcatag 288  Q
    |||||||||||||||| |||| |  ||||||||| ||||||| || || ||||||||| |||||  |||||||||||    
T  6301418 tctcaaattattatccatgtcagcatatcggtgtgtgtgttgcattcggtgtccgtgtttgtgtccatgcttcatag 6301494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 27932358 - 27932306
Alignment:
Q  111 tgtcctatgaagtacaaacactccttgaattaggggtgttctggtgtcggaca 163  Q
    |||||||||||| |||||||||||| |||||||| |||| |||||||| ||||    
T  27932358 tgtcctatgaagcacaaacactcctcgaattaggcgtgtcctggtgtccgaca 27932306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 19579722 - 19579663
Alignment:
Q  211 ttctcaaattattatccgtgtcggtgtatcggtgtctgtgttgtatccgatgtccgtgta 270  Q
    |||||||||||||| | ||||||| ||||| ||||| |||||||||||| |||| |||||    
T  19579722 ttctcaaattattagctgtgtcggcgtatcagtgtccgtgttgtatccggtgtcggtgta 19579663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 18288083 - 18288128
Alignment:
Q  205 gtcatattctcaaattattatccgtgtcggtgtatcggtgtctgtg 250  Q
    ||||| |||||||||||||||||||||| | || ||||||||||||    
T  18288083 gtcattttctcaaattattatccgtgtcagcgtctcggtgtctgtg 18288128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 269
Target Start/End: Complemental strand, 7658505 - 7658426
Alignment:
Q  190 attacagtgaatcacgtcatattctcaaattattatccgtgtcggtgtatcggtgtctgtgttgtatccgatgtccgtgt 269  Q
    |||||| ||||| | || || ||||||||||||||   ||||||| |||||| |||||||||||||||||||||||||||    
T  7658505 attacactgaattatgtaattttctcaaattattagtggtgtcggcgtatcgatgtctgtgttgtatccgatgtccgtgt 7658426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 264
Target Start/End: Original strand, 35431080 - 35431229
Alignment:
Q  115 ctatgaagtacaaacactccttgaattaggggtgttctggtgtcggacatt--tcggtgcccgacacgacgtctatgattacagtgaatcacgtcatatt 212  Q
    |||||||| ||| |||||  ||| ||||||||||| ||||||| ||| ||   ||| || ||||||||||  ||||||||||| | ||  | ||||| ||    
T  35431080 ctatgaagcacagacactttttggattaggggtgtcctggtgttggatatgcatcgatgtccgacacgacacctatgattacactaaaatatgtcatttt 35431179  T
Q  213 ctcaaattattatccgtgtcggtgtatcggtgtctgtgttgtatccgatgtc 264  Q
    ||||||||||||||||| |||  |||||  ||||||||||||||| ||||||    
T  35431180 ctcaaattattatccgtttcg--gtatctctgtctgtgttgtatctgatgtc 35431229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 40064010 - 40063946
Alignment:
Q  173 ccgacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcggtgt 237  Q
    ||||||||||| ||||||||||| ||||| | ||||| |||||||||||||||  ||||||||||    
T  40064010 ccgacacgacgcctatgattacaatgaattatgtcattttctcaaattattattggtgtcggtgt 40063946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 267
Target Start/End: Original strand, 24362241 - 24362296
Alignment:
Q  212 tctcaaattattatccgtgtcggtgtatcggtgtctgtgttgtatccgatgtccgt 267  Q
    ||||||||||||| | ||||||| || ||||||||||||| ||||||| |||||||    
T  24362241 tctcaaattattagcggtgtcggcgtgtcggtgtctgtgtcgtatccggtgtccgt 24362296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 269
Target Start/End: Complemental strand, 39820495 - 39820392
Alignment:
Q  166 tcggtgcccgacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcggtgtatcggtgtctgtgttgtatccgatgtcc 265  Q
    |||||| ||||||||||  ||||||||||| | ||| |  |||| ||||||||||||||| || ||| | || ||||||||||||| || |||| ||||     
T  39820495 tcggtgtccgacacgacacctatgattacactaaattatatcattttctcaaattattatacgggtcagcgtgtcggtgtctgtgtcgtgtccggtgtct 39820396  T
Q  266 gtgt 269  Q
    ||||    
T  39820395 gtgt 39820392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 288
Target Start/End: Complemental strand, 44067543 - 44067460
Alignment:
Q  205 gtcatattctcaaattattatccgtgtcggtgtatcggtgtctgtgttgtatccgatgtccgtgtatgtgtttatgcttcatag 288  Q
    ||||| |||||||||||||||||||||||| || || ||||| |||| || || | ||||||||| |||||   ||||||||||    
T  44067543 gtcattttctcaaattattatccgtgtcggcgtgtcagtgtcggtgtggtgtctggtgtccgtgtctgtgtccgtgcttcatag 44067460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 246
Target Start/End: Complemental strand, 3658203 - 3658133
Alignment:
Q  176 acacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcggtgtatcggtgtc 246  Q
    |||||||  ||||||||||| ||||  || | || ||||||||||||||||||||||| ||| ||||||||    
T  3658203 acacgacacctatgattacactgaactacattattttctcaaattattatccgtgtcgatgtgtcggtgtc 3658133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 4673466 - 4673519
Alignment:
Q  214 tcaaattattatccgtgtcggtgtatcggtgtctgtgttgtatccgatgtccgt 267  Q
    ||||||||||||| ||||||| || || |||||||||| || ||||||||||||    
T  4673466 tcaaattattatctgtgtcggcgtgtcagtgtctgtgtcgtgtccgatgtccgt 4673519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 269
Target Start/End: Complemental strand, 7625148 - 7625085
Alignment:
Q  206 tcatattctcaaattattatccgtgtcggtgtatcggtgtctgtgttgtatccgatgtccgtgt 269  Q
    |||| |||||||||||||||||||||||  || ||||||||||||| || ||||||||||||||    
T  7625148 tcattttctcaaattattatccgtgtcgacgtgtcggtgtctgtgtcgtgtccgatgtccgtgt 7625085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 34446624 - 34446565
Alignment:
Q  173 ccgacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtc 232  Q
    ||||||||||  ||||||||||| ||||| | ||||| ||||||||||||||||||||||    
T  34446624 ccgacacgacacctatgattacactgaattatgtcattttctcaaattattatccgtgtc 34446565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 25096444 - 25096386
Alignment:
Q  211 ttctcaaattattatccgtgtcggtgtatcggtgtctgtgttgtatccgatgtccgtgt 269  Q
    ||||||||||||||   ||||||  || |||||||||||||||||||||||||||||||    
T  25096444 ttctcaaattattagtggtgtcgtcgtgtcggtgtctgtgttgtatccgatgtccgtgt 25096386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 12235512 - 12235578
Alignment:
Q  166 tcggtgcccgacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtc 232  Q
    |||||| | ||||||||  ||||||||||| ||||| | ||||| ||||| ||||||||||||||||    
T  12235512 tcggtgtcggacacgacacctatgattacactgaattatgtcattttctctaattattatccgtgtc 12235578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 6389802 - 6389741
Alignment:
Q  173 ccgacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcgg 234  Q
    ||||||||||  ||||||||||| | ||| |  |||| ||||||||||||||||||||||||    
T  6389802 ccgacacgacacctatgattacactaaattatatcattttctcaaattattatccgtgtcgg 6389741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 12086345 - 12086405
Alignment:
Q  173 ccgacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcg 233  Q
    ||||||||||  ||||||||| | ||||| | |||||  ||||||||||||||||||||||    
T  12086345 ccgacacgacacctatgattaaactgaattatgtcattatctcaaattattatccgtgtcg 12086405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 288
Target Start/End: Complemental strand, 24343566 - 24343451
Alignment:
Q  173 ccgacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcggtgtatcggtgtctgtgttgtatccgatgtccgtgtatg 272  Q
    ||||||||||  |||| |||||| ||||| | || || |||||||||||||||||||||||| || |||| ||| |||| || |||| ||||||||| ||    
T  24343566 ccgacacgacacctataattacactgaattatgtaattttctcaaattattatccgtgtcggcgtgtcggcgtccgtgtcgtgtccggtgtccgtgtctg 24343467  T
Q  273 tgtttatgcttcatag 288  Q
    |||   ||||||||||    
T  24343466 tgtccgtgcttcatag 24343451  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 20743290 - 20743339
Alignment:
Q  185 ctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcgg 234  Q
    ||||||||||| ||||| | ||||| ||||||||||||||||||||||||    
T  20743290 ctatgattacactgaattatgtcattttctcaaattattatccgtgtcgg 20743339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 32910593 - 32910538
Alignment:
Q  190 attacagtgaatcacgtcatattctcaaattattatccgtgtcggtgtatcggtgt 245  Q
    |||||| ||||| | ||||| ||||||||||||||||||||||||| | |||||||    
T  32910593 attacactgaattatgtcattttctcaaattattatccgtgtcggtatgtcggtgt 32910538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 7012113 - 7012047
Alignment:
Q  185 ctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcggtgtatcggtgtctgtgt 251  Q
    ||||||| ||| ||||| | ||||| |||||||||||||||| ||||||| || |||||||| ||||    
T  7012113 ctatgatcacactgaattatgtcattttctcaaattattatcggtgtcggcgtgtcggtgtccgtgt 7012047  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 16402211 - 16402272
Alignment:
Q  173 ccgacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcgg 234  Q
    ||||||||||  |||| |||||| || |||| || || ||||||||||||||||||||||||    
T  16402211 ccgacacgacagctataattacactgtatcatgttattttctcaaattattatccgtgtcgg 16402272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 17876286 - 17876237
Alignment:
Q  114 cctatgaagtacaaacactccttgaattaggggtgttctggtgtcggaca 163  Q
    ||||||||| ||| |||||||||| |||||| |||| |||||||||||||    
T  17876286 cctatgaagcacagacactccttggattaggtgtgtcctggtgtcggaca 17876237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 289
Target Start/End: Original strand, 22683758 - 22683869
Alignment:
Q  176 acacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcggtgtatcggtgtctgtgttgtatccgatgtccgtgtatgtgt 275  Q
    |||||||  |||||||| || ||||| |  |||||||||||||||||||||||| ||||||  |||||||||||||||| || | |||| | || |||||    
T  22683758 acacgacacctatgattgcactgaattatatcatattctcaaattattatccgtctcggtg--tcggtgtctgtgttgtgtctggtgtctgcgtctgtgt 22683855  T
Q  276 ttatgcttcatagt 289  Q
    |  |||||||||||    
T  22683856 tcgtgcttcatagt 22683869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 11061117 - 11061172
Alignment:
Q  214 tcaaattattatccgtgtcggtgtatcggtgtctgtgttgtatccgatgtccgtgt 269  Q
    ||||||||||| | |||||||||| || ||||| |||| |||||||||||||||||    
T  11061117 tcaaattattagctgtgtcggtgtgtcagtgtccgtgtcgtatccgatgtccgtgt 11061172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 4017832 - 4017872
Alignment:
Q  211 ttctcaaattattatccgtgtcggtgtatcggtgtctgtgt 251  Q
    |||||||||||||||||||||||| || |||||||| ||||    
T  4017832 ttctcaaattattatccgtgtcggcgtgtcggtgtccgtgt 4017872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 7133290 - 7133342
Alignment:
Q  185 ctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcggtgt 237  Q
    ||||||||||| ||||| | ||||| |||||||||||| ||| ||||||||||    
T  7133290 ctatgattacactgaattatgtcattttctcaaattatcatctgtgtcggtgt 7133342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 23930266 - 23930218
Alignment:
Q  185 ctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcg 233  Q
    ||||||||||| ||||| | ||||| ||||||||||| |||||||||||    
T  23930266 ctatgattacactgaattatgtcattttctcaaattactatccgtgtcg 23930218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 11308004 - 11308075
Alignment:
Q  173 ccgacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcggtgtatcggtgt 245  Q
    ||||||||||  ||||||||||| ||||| | ||||| || |||||||| ||||||||||||| |||||||||    
T  11308004 ccgacacgacacctatgattacactgaattatgtcattttttcaaatta-tatccgtgtcggtatatcggtgt 11308075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 25544540 - 25544476
Alignment:
Q  173 ccgacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcggtgt 237  Q
    ||||||||||  ||||||||||| ||||| |  |||| ||||||||||||||| |||||||||||    
T  25544540 ccgacacgacacctatgattacactgaattatatcattttctcaaattattatacgtgtcggtgt 25544476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 10535772 - 10535825
Alignment:
Q  186 tatgattacagtgaatcacgtcatattctcaaattattatccgtgtcggtgtat 239  Q
    |||||||||| ||||| | ||||| |||||||||||||||| ||||||| ||||    
T  10535772 tatgattacactgaattatgtcattttctcaaattattatcggtgtcggcgtat 10535825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 40747785 - 40747837
Alignment:
Q  185 ctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcggtgt 237  Q
    |||| |||||| ||||| | ||||| |||||||||||||||||||||||||||    
T  40747785 ctataattacattgaattatgtcattttctcaaattattatccgtgtcggtgt 40747837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 21145526 - 21145466
Alignment:
Q  173 ccgacacgacgtctatgattacagtgaatcacgtca-tattctcaaattattatccgtgtc 232  Q
    ||||||||||| ||||||||||| ||||| | |||| | || |||||||||||||||||||    
T  21145526 ccgacacgacgcctatgattacactgaattatgtcatttttttcaaattattatccgtgtc 21145466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 42004959 - 42005011
Alignment:
Q  185 ctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcggtgt 237  Q
    ||||||||||| | ||| | ||||| |||||||||||||||||||||| ||||    
T  42004959 ctatgattacactaaattatgtcattttctcaaattattatccgtgtctgtgt 42005011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 26045 - 25979
Alignment:
Q  185 ctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcggtgtatcggtgtctgtgt 251  Q
    |||||||| || ||||||| ||||| |||||| |||||||||  |||||||||||| ||||| ||||    
T  26045 ctatgattgcactgaatcatgtcattttctcacattattatcgatgtcggtgtatcagtgtcagtgt 25979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 225300 - 225370
Alignment:
Q  205 gtcatattctcaaattattatccgtgtcggtgtatcggtgtctgtgttgtatccgatgtccgtgtatgtgt 275  Q
    ||||| |||||||||||||||| ||||||| || || ||||| |||| || |||| ||||||||| |||||    
T  225300 gtcattttctcaaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtctgtgt 225370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 267
Target Start/End: Original strand, 135350 - 135406
Alignment:
Q  211 ttctcaaattattatccgtgtcggtgtatcggtgtctgtgttgtatccgatgtccgt 267  Q
    |||||||||||||| | |||||||||| | ||||||||||| |||| || |||||||    
T  135350 ttctcaaattattagcagtgtcggtgtgttggtgtctgtgtcgtattcggtgtccgt 135406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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