View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1750_low_14 (Length: 313)
Name: NF1750_low_14
Description: NF1750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1750_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 13 - 295
Target Start/End: Complemental strand, 30768328 - 30768046
Alignment:
| Q |
13 |
tcatcaagaaagcaaagtcttccattgacaagctcgcggagcttcctccatggcatccaatcggcgaaaatcaaactctgaaacctctagaagaagttca |
112 |
Q |
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| T |
30768328 |
tcatcaagaaagcaaagtcttccattgacaagctcgcggagcttcctccatggcatccaatcagcgaaaatcaaactctgaaacctctagaagaagttca |
30768229 |
T |
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| Q |
113 |
gaatgtagttgcaaactcaagtggaatggttgttggagaaacatcagaatctaatggttacagttttcatcttttaagacaattaagtgagaatcaaggt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30768228 |
gaatgtagttgcaaactcaagtggaatggttgttggagaaacatcagaatctaatggttacagttttcatcttttaagacaattaagtgagaatcaaggt |
30768129 |
T |
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| Q |
213 |
aaccataattcagctttcatttcaccacataatgttgaaactgatcctataccnnnnnnnccaactacatcttctacttcttc |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30768128 |
aaccataattcagctttcatttcaccacataatgttgaaactgatcctatacctttttttccaactacatcttctacttcttc |
30768046 |
T |
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