View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1750_low_16 (Length: 303)
Name: NF1750_low_16
Description: NF1750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1750_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 12 - 167
Target Start/End: Complemental strand, 45255062 - 45254907
Alignment:
| Q |
12 |
tactagtatataatagtggaagtacaacttcagttacactcagaatcccaaacaaacaacaaaagacaaaacaagagagagttcacttatttttattaac |
111 |
Q |
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| T |
45255062 |
tactagtatataagagtggaagtacaacttcagttacactcagaatcccaaacaaacaacaaaagacaaaacaagagagagttcacttatttttatcaac |
45254963 |
T |
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| Q |
112 |
agtttttgtttggttaattaatatctattctctgaccctacatctttggtacgcaa |
167 |
Q |
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| T |
45254962 |
agtttttgtttggttaattaatatctattctctgaccctacatctttggtacgcaa |
45254907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 45254839 - 45254790
Alignment:
| Q |
240 |
gattgatacggttggtaatgttctacctcagatttgttacatgtcaatat |
289 |
Q |
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| T |
45254839 |
gattgatacggttggtaatgttctacctcagatttgttacatgtcaatat |
45254790 |
T |
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