View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1750_low_2 (Length: 686)
Name: NF1750_low_2
Description: NF1750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1750_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 17 - 293
Target Start/End: Complemental strand, 34466322 - 34466046
Alignment:
| Q |
17 |
aaaagatggtgaaacagggtttataggaggaaaagattgcacactttcaatagggctaagattaagtgaaggagaacgtgagagagagtaggaaagaggg |
116 |
Q |
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| T |
34466322 |
aaaagatggtgaaacagggtttataggaggaaaagattgcacactttcaatagggctaagattaagtgaaggagaacgtgagagagagtaggaaagaggg |
34466223 |
T |
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| Q |
117 |
tatgaagcagttcttgaagtaaagcttttactaccaaatttatcatagtgaaaaacgttgaaggaacgtgagcttgtagcagcaacagcaactgtgacaa |
216 |
Q |
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| T |
34466222 |
tatgaagcagttcttgaagtaaagcttttactaccaaatttatcatagtgaaaaacgttgaaggaacgtgagcttgtagcagcaacagcaactgtgacaa |
34466123 |
T |
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| Q |
217 |
ccggggaagaagaaggagaaagagaaggactgtgttgttgtttgttcccagaaggagaacctttcggtgaataaaac |
293 |
Q |
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| T |
34466122 |
ccggggaagaagaaggagaaagagaaggactgtgttgttgtttgttcccagaaggagaacctttcggtgaataaaac |
34466046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 374 - 648
Target Start/End: Complemental strand, 34465950 - 34465679
Alignment:
| Q |
374 |
gacattgtgacgtggcagtggtggtaaagggtgtaactccggcgagtctgtaacataccggtacggcggagggaaaccgtcattgctgttaccgttacag |
473 |
Q |
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| T |
34465950 |
gacattgtgacgtggcagtggtggtaaagggtgtaactccggcgagtctgtaacataccggtacggcggagggaaaccgtcattgctgttaccgttacag |
34465851 |
T |
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| Q |
474 |
cttgactctgctgttgcttttgtgtcatctaaagttgttgttatagttccaaggttgaataactccgacatagaacttgacttgtcgttggttgtttggt |
573 |
Q |
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| T |
34465850 |
cttgactctgctgttgcttttgtgtcatctaaagttgtt---atagttccaaggttgaataactccgacatagaacttgacttgtcgttggttgtttggt |
34465754 |
T |
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| Q |
574 |
cgacggagtctgaagtagcggtgtttggtgggaacaaacggagactatctgatcttgaagcattatcatcgttaa |
648 |
Q |
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| T |
34465753 |
cgacggagtctgaagtagcggtgtttggtgggaacaaacggagactatctgatcttgaagcattatcatcgttaa |
34465679 |
T |
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