View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1750_low_22 (Length: 226)

Name: NF1750_low_22
Description: NF1750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1750_low_22
NF1750_low_22
[»] chr5 (16 HSPs)
chr5 (1-212)||(37429085-37429296)
chr5 (2-74)||(37412873-37412945)
chr5 (133-212)||(37640225-37640304)
chr5 (133-178)||(37400540-37400585)
chr5 (133-178)||(37533487-37533532)
chr5 (133-178)||(37594711-37594756)
chr5 (133-178)||(37697174-37697219)
chr5 (133-178)||(37703055-37703100)
chr5 (1-178)||(37824282-37824459)
chr5 (1-89)||(37533576-37533664)
chr5 (1-89)||(37594800-37594888)
chr5 (1-89)||(37703144-37703232)
chr5 (1-86)||(37436186-37436271)
chr5 (133-178)||(37712011-37712056)
chr5 (1-89)||(37392488-37392576)
chr5 (1-89)||(37400408-37400496)
[»] chr4 (3 HSPs)
chr4 (133-178)||(24217468-24217513)
chr4 (133-178)||(16842604-16842649)
chr4 (1-89)||(16842472-16842560)
[»] chr3 (1 HSPs)
chr3 (133-178)||(14553497-14553542)


Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 37429296 - 37429085
Alignment:
Q  1 gttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatcaccaaattttcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37429296 gttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatcaccaaattttcca 37429197  T
Q  101 agttacattttgttcttttacaatctaacaacttaaacggaacaattccacactggtgttattccttgccttcgttgtcatggttgtatctcaatgataa 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37429196 agttaaattttgttcttttacaatctaacaacttaaacggaacaattccacactggtgttattccttgccttcgttgtcatggttgtatctcaatgataa 37429097  T
Q  201 ctaactcacagg 212  Q
    | ||||||||||    
T  37429096 ccaactcacagg 37429085  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 37412873 - 37412945
Alignment:
Q  2 ttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaat 74  Q
    |||| ||||||||||| |||||| |||| ||||||   ||||||||||| ||||||||||||| |||||||||    
T  37412873 ttccctcatcattgttccatctagctcaactttcttatttagatttatcatttaataaattagttggcccaat 37412945  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 37640304 - 37640225
Alignment:
Q  133 ttaaacggaacaattccacactggtgttattccttgccttcgttgtcatggttgtatctcaatgataactaactcacagg 212  Q
    ||||| |||||||||||||| ||||||||||| ||||||||||||| |  |||||| |||| ||| ||| | ||||||||    
T  37640304 ttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttgtacctcagtgacaacaatctcacagg 37640225  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 37400540 - 37400585
Alignment:
Q  133 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 178  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  37400540 ttaaatggaacaattccacattggtgttattctttgccttcgttgt 37400585  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 37533532 - 37533487
Alignment:
Q  133 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 178  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  37533532 ttaaatggaacaattccacattggtgttattctttgccttcgttgt 37533487  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 37594756 - 37594711
Alignment:
Q  133 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 178  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  37594756 ttaaatggaacaattccacattggtgttattctttgccttcgttgt 37594711  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 37697219 - 37697174
Alignment:
Q  133 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 178  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  37697219 ttaaatggaacaattccacattggtgttattctttgccttcgttgt 37697174  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 37703100 - 37703055
Alignment:
Q  133 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 178  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  37703100 ttaaatggaacaattccacattggtgttattctttgccttcgttgt 37703055  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 37824459 - 37824282
Alignment:
Q  1 gttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatcaccaaattttcca 100  Q
    |||||||||||| | ||||||||| |||| ||||||   ||| ||||||| | ||| ||| ||| |||||||||||| ||| ||||||| |||  ||| |    
T  37824459 gttccatcatcactttttcatctacctcatctttcttatttatatttatcatctaacaaactagttggcccaattccaattgaaatcacaaaacgttcaa 37824360  T
Q  101 agttacattttgttcttttacaatctaacaacttaaacggaacaattccacactggtgttattccttgccttcgttgt 178  Q
    | ||   | ||||   ||||   | |||||  ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  37824359 aattgagtattgtggatttaagctttaacatgttaaatggaacaattccacattggtgttattctttgccttcgttgt 37824282  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 37533664 - 37533576
Alignment:
Q  1 gttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatcac 89  Q
    |||||||||||| | ||||||||| |||| |||||||| |||| |||||| | ||| ||| ||| ||| |||||||| ||| |||||||    
T  37533664 gttccatcatcactttttcatctacctcacctttctattttaggtttatcatataacaaactagttgggccaattccaattgaaatcac 37533576  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 37594888 - 37594800
Alignment:
Q  1 gttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatcac 89  Q
    |||||||||||| | ||||||||| |||| |||||||| |||| |||||| | ||| ||| ||| ||| |||||||| ||| |||||||    
T  37594888 gttccatcatcactttttcatctacctcacctttctattttaggtttatcatataacaaactagttgggccaattccaattgaaatcac 37594800  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 37703232 - 37703144
Alignment:
Q  1 gttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatcac 89  Q
    |||||||||||| | ||||||||| |||| |||| ||| |||| |||||| ||||| ||| ||| ||| |||||||| ||| |||||||    
T  37703232 gttccatcatcactttttcatctacctcacctttttattttaggtttatcatttaacaaactagttgggccaattccaattgaaatcac 37703144  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 37436271 - 37436186
Alignment:
Q  1 gttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaat 86  Q
    |||||||||||| | ||||||||| | || ||||||   ||||||||||| ||||| ||| ||| |||||||||||| ||| ||||    
T  37436271 gttccatcatcactttttcatctaccccacctttctcatttagatttatcatttaacaaactagttggcccaattccaattgaaat 37436186  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 37712056 - 37712011
Alignment:
Q  133 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 178  Q
    ||||| |||||||||||||| ||||||||||| |||||||| ||||    
T  37712056 ttaaatggaacaattccacagtggtgttattctttgccttcattgt 37712011  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 37392488 - 37392576
Alignment:
Q  1 gttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatcac 89  Q
    |||||||||||| | ||||||||| |  | |||||| | ||||||||||| | ||| ||| ||| ||||||||||||  ||||||||||    
T  37392488 gttccatcatcactttttcatctacccaacctttcttttttagatttatcatctaacaaactagttggcccaattccagttcaaatcac 37392576  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 37400408 - 37400496
Alignment:
Q  1 gttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatcac 89  Q
    |||||||||||| | ||||||||| |||| ||||||   ||| ||||||| | ||| ||| ||| |||||||||||| ||| |||||||    
T  37400408 gttccatcatcactttttcatctacctcatctttctcatttatatttatcatctaacaaactagttggcccaattccaattgaaatcac 37400496  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 24217468 - 24217513
Alignment:
Q  133 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 178  Q
    ||||| ||||||||||| || |||||||||||||||||||||||||    
T  24217468 ttaaatggaacaattccgcaatggtgttattccttgccttcgttgt 24217513  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 16842604 - 16842649
Alignment:
Q  133 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 178  Q
    ||||| |||||||||||| | ||||||||||| |||||||||||||    
T  16842604 ttaaatggaacaattccaaattggtgttattctttgccttcgttgt 16842649  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 16842472 - 16842560
Alignment:
Q  1 gttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatcac 89  Q
    |||||||||||| | ||||||||| || | |||||||  ||| ||||||| ||||| ||| | | |||||||||||| ||| |||||||    
T  16842472 gttccatcatcactttttcatctaccttatctttctaatttatatttatcatttaacaaactggttggcccaattccaattgaaatcac 16842560  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 14553542 - 14553497
Alignment:
Q  133 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 178  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  14553542 ttaaatggaacaattccacattggtgttattctttgccttcgttgt 14553497  T

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