View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1750_low_5 (Length: 484)
Name: NF1750_low_5
Description: NF1750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1750_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 13 - 467
Target Start/End: Original strand, 699884 - 700342
Alignment:
| Q |
13 |
aatatgggaataaaaacagatgcatttaaacctcccatatatgttatatgtttgttaaataatttgaatttgtaattgttaaatatcacacatgcatcgc |
112 |
Q |
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| T |
699884 |
aatataggaataaaaaaagatgcatttaaacctcccatatatgtt-tatgtttgttaaataatttgaatttgtaattgttatatatcacaggtgcatcgc |
699982 |
T |
|
| Q |
113 |
attcaaactaaactaaatcgtctcactttttcaagtgggttaaccaaaactcaaatagtac----ctcttatattttgtagtaaaaaggttcgagaacaa |
208 |
Q |
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| T |
699983 |
attcaaactaaactaaatcgtctcactttttcaagtgggttaaccaaaactcaaatagtacatacctcttatattttgtagtaaaa-ggttcgagaacaa |
700081 |
T |
|
| Q |
209 |
tttaataagtaaaagtattatgagaaacattgcattaaatttagcaagatgatgatgatataaggcagaagcagcagatggcaatcatagtatgtggtag |
308 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
700082 |
tttaataagtaaaagtattatgagaaatattgcattaaatttagcaagatgatgatgatataaggcagaagcagcagttggcaatcatagtatgtggtag |
700181 |
T |
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| Q |
309 |
ccctatgcccctatctgcagcaggtctttcctacacttcaactcatcattatgatgacgtgccttgtccctcacttcaatgcaaatatttgtaggacttg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
700182 |
ccctatgcccctatctgcagcaggtctttcctacacttcaactcatcattatgatgacgtgccttgtccctcacttcaatgcaaatatttgtaggacttg |
700281 |
T |
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| Q |
409 |
acttaacatattgcttgc-tctaatgcttcatgttcatg-ttgtgacaaaccgacaattag |
467 |
Q |
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|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
700282 |
acttaacatattgcttgcttctaatgcttcatgttcatgcttgtgacaaaccgacaattag |
700342 |
T |
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