View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1750_low_6 (Length: 476)
Name: NF1750_low_6
Description: NF1750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1750_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Original strand, 30768305 - 30768770
Alignment:
| Q |
1 |
tggaagactttgctttcttgatgagccaatccactgctttgcttggtctgtcgtagccgaggcgatcttgaacatcgtagaattcgatggctgtgtgtgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30768305 |
tggaagactttgctttcttgatgagccaatccactgctttgcttggtctgtcgtagccgaggcgatcttgaacatcgtagaattcgatggctgtgtgtgc |
30768404 |
T |
|
| Q |
101 |
tgagagtcgaaccctgcgatcgcgaggaccttttgatgtgtaaaccttgctgtgacgatcttttttaccggtggctcgaactatgtgtcctccttctact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30768405 |
tgagagtcgaaccctgcgatcgcgaggaccttttgatgtgtaaaccttgctgtgacgatcttttttaccggtggctcgaactatgtgtcctccttctact |
30768504 |
T |
|
| Q |
201 |
tgaactatctctcctccagtactcctcatccctagttctcaccttctctatgctttctatggaaagttgtttctatttggtggggttggttttgggctta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30768505 |
tgaactatctctcctccagtactcctcatccctagttcccaccttctctatgctttctatgaaaagttgtttctatttggtggggttggttttgggctta |
30768604 |
T |
|
| Q |
301 |
ttgatgaggatattgataatgagtgtgtttttatttggagaaatgcaagtctaaccggaaagtgcttataaagagagtcactcctcaccctacaaccggt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30768605 |
ttgatgaggatattgataatgagtgtgtttttatttggagaaatgcaagtctaaccggaaagtgcttataaagagagtcactcctcaccctacaaccggt |
30768704 |
T |
|
| Q |
401 |
tttgtaacgatgagttttaaaactaataaagtttaagtgttgttgttatgattcatgtgccctttg |
466 |
Q |
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| T |
30768705 |
tttgtaacgatgagttttaaaactaataaagtttaagtgttgttgttatgattcatgtgccctttg |
30768770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 217
Target Start/End: Original strand, 39077283 - 39077495
Alignment:
| Q |
5 |
agactttgctttcttgatgagccaatccactgctttgcttggtctgtcgtagccgaggcgatcttgaacatcgtagaattcgatggctgtgtgtgctgag |
104 |
Q |
| |
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|||||| || || ||||| |||||||| || ||||| || ||||||||||||||||| || ||||||||||| ||||||| || |||||||||||||| |
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| T |
39077283 |
agacttagcctttttgataagccaatcaacagctttactcggtctgtcgtagccgagacggtcttgaacatcatagaattgaattgctgtgtgtgctgat |
39077382 |
T |
|
| Q |
105 |
agtcgaaccctgcgatcgcgaggaccttttgatgtgtaaaccttgctgtgacgatcttttttaccggtggctcgaactatgtgtcctccttctacttgaa |
204 |
Q |
| |
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| |||||| | ||||| ||||||||||| | ||||| ||||| || || | |||||| |||| || || | || ||||| ||||||| ||||||| |
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| T |
39077383 |
aatcgaacacgtcgatcacgaggacctttcgcagtgtataccttactatgtctgtcttttctacctgtcgcccttacaatgtggcctccttgaacttgaa |
39077482 |
T |
|
| Q |
205 |
ctatctctcctcc |
217 |
Q |
| |
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|||| |||||||| |
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|
| T |
39077483 |
ctatttctcctcc |
39077495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 22328097 - 22327946
Alignment:
| Q |
12 |
gctttcttgatgagccaatccactgctttgcttggtctgtcgtagccgaggcgatcttgaacatcgtagaattcgatggctgtgtgtgctgagagtcgaa |
111 |
Q |
| |
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||||| || ||||||||||| |||||||| ||||| | |||||||||||| |||||||| || |||||||||| || || ||||| ||||||||||| | |
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| T |
22328097 |
gcttttttaatgagccaatcgactgctttacttggccggtcgtagccgagacgatcttgcacgtcgtagaattgaatcgcagtgtgggctgagagtcgta |
22327998 |
T |
|
| Q |
112 |
ccctgcgatcgcgaggaccttttgatgtgtaaaccttgctgtgacgatcttt |
163 |
Q |
| |
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| | ||| || || |||||||| | ||| |||| || |||||||| ||||| |
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| T |
22327997 |
cacggcggtcacggggacctttcgcggtgcaaactttactgtgacggtcttt |
22327946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 416
Target Start/End: Original strand, 44573371 - 44573423
Alignment:
| Q |
366 |
ttataaagag-agtcactcctcaccctacaa-ccggttttgtaacgatgagtt |
416 |
Q |
| |
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|||||||||| || ||||||||||||||||| |||||||||||| |||||||| |
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| T |
44573371 |
ttataaagaggaggcactcctcaccctacaagccggttttgtaaggatgagtt |
44573423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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