View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1750_low_9 (Length: 392)
Name: NF1750_low_9
Description: NF1750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1750_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 3 - 376
Target Start/End: Complemental strand, 14433644 - 14433270
Alignment:
| Q |
3 |
atcaccctatcaatgttgtttctcctactccttattactcggtgatctttctttcttataaacaaaatggcctcctatacagactaaaa-tgtctcgtct |
101 |
Q |
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| T |
14433644 |
atcaccctatcaatgttatttctcctactccttattactcggtgatctttctttcttataaacaaaatggtctcgtatacagactaaaaatgtctcgtat |
14433545 |
T |
|
| Q |
102 |
attcaaatatgttttaggtctcatctacaaataaaatttattgggccgaccatgcaaggaaggttaactaacaatgtgtttaattttattttgtaggaat |
201 |
Q |
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| T |
14433544 |
attaaaatatgttttaggtctcacctacaaataaaatttactgggccgaccatgcaaggaaggttaactaacaatgcgtttaattttattttgtaggaat |
14433445 |
T |
|
| Q |
202 |
acaaaaatgcaattaatatattgcattcaaggatgtttcaatggggtggtgatgttgctgtgtatgataaaaatgaatcttacatagaggtggtgacctc |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14433444 |
acaaaaatgcaattaatatattgcattcaaggatgtttcaatggggtggtgatgctgctgtgtatgataaaaatgaatcttacatagaggtggtgacttc |
14433345 |
T |
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| Q |
302 |
cccaaacaaccctgatggaacccttcgtgtaccagtggtgaactctgcagctaaagggaaattgattcatgactt |
376 |
Q |
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| T |
14433344 |
cccaaacaaccctgatggaacccttcgtgtaccagtggtgaactctgcagctaaagggaaattgattcatgactt |
14433270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 186 - 346
Target Start/End: Complemental strand, 14441791 - 14441631
Alignment:
| Q |
186 |
tttattttgtaggaatacaaaaatgcaattaat-atattgcattcaaggatgtttcaatggggtggtgatgttgctgtgtatgataaaaatgaatcttac |
284 |
Q |
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|||||||||||||||||| || ||| ||| || ||| |||| |||||| | ||||||||||||||||||| |||| |||||||| |||| || ||||| |
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| T |
14441791 |
tttattttgtaggaataccaagatgtgattgatcata-tgcaatcaaggctatttcaatggggtggtgatgctgctttgtatgatgaaaacaaaccttac |
14441693 |
T |
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| Q |
285 |
atagaggtggtgacctccccaaacaaccctgatggaacccttcgtgtaccagtggtgaactc |
346 |
Q |
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|||||||| |||||||||||||||||||||||||| || ||||| ||||||||||||||| |
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| T |
14441692 |
atagaggtagtgacctccccaaacaaccctgatgggactcttcgaacaccagtggtgaactc |
14441631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 14443061 - 14443011
Alignment:
| Q |
3 |
atcaccctatcaatgttgtttctcctactccttattactcggtgatctttc |
53 |
Q |
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|||| ||||||||||||||| || || |||||||||||||||| ||||||| |
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| T |
14443061 |
atcaacctatcaatgttgttgctgctgctccttattactcggtaatctttc |
14443011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 32598443 - 32598355
Alignment:
| Q |
58 |
ttataaacaaaatggcctcctatacagactaaaa-tgtctcgtctattcaaatatgttttaggtctcatctacaaataaaatttattgg |
145 |
Q |
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|||||||||||| ||| || |||| ||||||||| || ||| | |||| |||| |||||||| ||| ||||||||||||||||||||| |
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| T |
32598443 |
ttataaacaaaaaggcttcatatatagactaaaaatgcctcatatattaaaatttgttttagacctcttctacaaataaaatttattgg |
32598355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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