View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1751-Insertion-1 (Length: 890)
Name: NF1751-Insertion-1
Description: NF1751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1751-Insertion-1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 763; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 763; E-Value: 0
Query Start/End: Original strand, 8 - 881
Target Start/End: Original strand, 51199869 - 51200748
Alignment:
| Q |
8 |
gaaacctagttctatggtttggtttgggagggctattggaaaaaacaacaaaagacaagaaatatggttccccgatctgaactggaggactcaaaaatat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
51199869 |
gaaacctagttctatggtttggtttgggagggctattggaaaaaacaacaaaagacaagaaatatggttccctgatctgaactggaggactcaaaaatat |
51199968 |
T |
|
| Q |
108 |
gcattggaggaaaatgctagagggcttnnnnnnntagacattacaacgaccaaa-ctcgaactcgctatatttgtatggaccaaatgcatattttagctt |
206 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
51199969 |
gcattggaagaaaatgctagagggcttaaaaaaatagacattacagcgaccaaaactcgaactcgctatatttgtatggaccaaatgcatatttaagctt |
51200068 |
T |
|
| Q |
207 |
atatataaaaagatagtttatatgattttgatttggatttcttgttgtaattgtgtaacgcaattattgtccaattgaaataaacgatggaggtcgtttt |
306 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
51200069 |
atatataaaaagatagtttatataattttgatttggatttcttgttgtaattgtgtaacgcaattattgtccaatcgaaataaacgatcgaggtcgtttt |
51200168 |
T |
|
| Q |
307 |
attgtgagaaatagagtttaaaatataaactttccgatctcaaatcaatgattgagaaccacctgaaaacactataacaatgaatacaggtccatctaag |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51200169 |
attgtgagaaatagagtttaaaatataaactgtccgatctcaaatcaatgattgagaaccacctgaaaacactataacaatgaatacaggtccatctaag |
51200268 |
T |
|
| Q |
407 |
ttgacctgctaaaaatccatgtattattcgtttgtgttgttttctctgttttatcaacaatattgtatatataatgacaaaaattgcataagaaatgtaa |
506 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51200269 |
ttgacctgttaaaaatccatgtattattcgtttgtgttgttttctctgttttatcaacaatattgtatatataatgacaaaaattgcataagaaatgtaa |
51200368 |
T |
|
| Q |
507 |
agtttcttctttggtgtccttggaaatggagtttatcgcatctatttacccttgaattgatcaacaagctagtaacttattatgcttcatgtgacatcac |
606 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
51200369 |
agtttcttctttggtgtccttggaaatgaagtttatcgcatctatttacccttgaattgatcaacaagctagtaacttactatgcttcatgtgacatcac |
51200468 |
T |
|
| Q |
607 |
tttgattatatactgtctaactaaaaatgtaactactaactagaaattatatatgttgggttaatgtatatatcatgcttaccatttctaatgtagacac |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51200469 |
tttgattatatactgtctaactaaaaatgtaactactaactagaaattatatatgttgggttaatgtatatatcatgcttaccatttctaatgtagacac |
51200568 |
T |
|
| Q |
707 |
cctctggaaaatcattcggaattcgtccatggatgcaagtcacaactatggcttcctccaactcttccacaggagc-aagttactctgcagcgcattgaa |
805 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
51200569 |
cctctggaaaatcattcggaattcgtccatggatgcaagtcacaactatggcttcctccaactcttccacaggagcaaagttactctgcagcgcattgaa |
51200668 |
T |
|
| Q |
806 |
ca-gtaatgaatatatagaacaaaattt-aagattc-aaagaacac-atttatatgtaccgagaagcaagaagagcttta |
881 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
51200669 |
caggtaatgaatatatagaacaaaatttaaagattcaaaagaacacaatttatatgtacggagaagcaagaagagcttta |
51200748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 21165285 - 21165236
Alignment:
| Q |
166 |
aactcgctatatttgtatggaccaaatgcatattttagcttatatataaa |
215 |
Q |
| |
|
||||||||||||||| | |||||||| |||||||||||| ||||||||| |
|
|
| T |
21165285 |
aactcgctatatttgcagggaccaaaagcatattttagccaatatataaa |
21165236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 19674460 - 19674415
Alignment:
| Q |
159 |
aaactcgaactcgctatatttgtatggaccaaatgcatattttagc |
204 |
Q |
| |
|
|||||| ||||||||||||||| | |||||||| |||||||||||| |
|
|
| T |
19674460 |
aaactcaaactcgctatatttgcaaggaccaaaagcatattttagc |
19674415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 24427382 - 24427427
Alignment:
| Q |
159 |
aaactcgaactcgctatatttgtatggaccaaatgcatattttagc |
204 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
24427382 |
aaactcaaactcgctatatttgtagggaccaaaaacatattttagc |
24427427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 48334145 - 48334190
Alignment:
| Q |
159 |
aaactcgaactcgctatatttgtatggaccaaatgcatattttagc |
204 |
Q |
| |
|
|||||| || |||||||||||||| |||||||| |||||||||||| |
|
|
| T |
48334145 |
aaactcaaattcgctatatttgtagggaccaaaagcatattttagc |
48334190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University