View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1751-Insertion-10 (Length: 545)
Name: NF1751-Insertion-10
Description: NF1751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1751-Insertion-10 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 9 - 545
Target Start/End: Original strand, 552052 - 552596
Alignment:
| Q |
9 |
gttagagattgtagataaataagctcaatgaattaattgccaattgat--------cgtctatcaattacaattgacacactatttatagattgatttca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
552052 |
gttagagattgtagataaataagctcaatgaattaattggcaattgataagcaaagcgtctatcaattacaattgacacactatttatagattgatttca |
552151 |
T |
|
| Q |
101 |
agttcaaaattctacaaattttcattcatcaaataaatgaaataaggaaagggtctgttatctctcggattcaaatcttgattcgctcgttagtttgcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
552152 |
agttcaaaattctacaaattttcattcatcaaataaataaaataaggaaatggtctgttatctctcggattcaaatcttgattcgctccttagtttgcaa |
552251 |
T |
|
| Q |
201 |
aagttaaccccgtctagtagactcacctccattgataattaagttgttatctctacttctctatgcagaagtttcttgtcttcttttcatggtatcttat |
300 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
552252 |
aagttaaccccttctagtagactcacctccattgataattaagttgttatctctacttctctatgcagaagtttcttgtctttttttcatggtatcttat |
552351 |
T |
|
| Q |
301 |
cttatcactgctctacaattattttggaccttcgatattgtgaaatgcgtttaaagattatctatctcaaatagtgaagaatctaggaccgtgcttacta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
552352 |
cttatcactgctctacaattattttggaccttcgatattgtgaaatgcgtttaaagattatctatctcaaatagtgaagaatctaggaccgtgcttacta |
552451 |
T |
|
| Q |
401 |
accaaaactacttatcactcatactacattactacaccaatttgatatgataaattgattgatattatcaaagaaagagatgagatcaattgacaccatg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
552452 |
accaaaactacttatcactcatactacattactacaccaatttgatatcataaattgattgatattatcaaagaaagagatgagatcaattgacaccatg |
552551 |
T |
|
| Q |
501 |
gtgttgaaatttaatgacaccaaatcccactcattcatttatggt |
545 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
552552 |
gttttgaaatttaatgacaccaaatctcactcattcatttatggt |
552596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University