View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1751-Insertion-12 (Length: 509)

Name: NF1751-Insertion-12
Description: NF1751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1751-Insertion-12
NF1751-Insertion-12
[»] chr3 (12 HSPs)
chr3 (205-509)||(9440279-9440583)
chr3 (21-203)||(9439921-9440102)
chr3 (242-335)||(9412604-9412697)
chr3 (233-306)||(9420076-9420149)
chr3 (244-335)||(9356807-9356899)
chr3 (243-335)||(9401697-9401788)
chr3 (336-418)||(7314600-7314682)
chr3 (51-194)||(9356633-9356791)
chr3 (336-418)||(39964639-39964721)
chr3 (336-415)||(35443333-35443411)
chr3 (123-234)||(9401515-9401623)
chr3 (121-221)||(9432248-9432345)
[»] chr4 (4 HSPs)
chr4 (336-418)||(31598716-31598797)
chr4 (334-413)||(1470438-1470517)
chr4 (336-391)||(6186899-6186954)
chr4 (334-391)||(6936172-6936229)
[»] chr2 (7 HSPs)
chr2 (336-418)||(27733075-27733157)
chr2 (336-418)||(42809350-42809431)
chr2 (336-418)||(25613426-25613508)
chr2 (334-417)||(26831935-26832018)
chr2 (336-391)||(30939018-30939073)
chr2 (414-468)||(26228642-26228696)
chr2 (359-418)||(43668345-43668404)
[»] chr5 (2 HSPs)
chr5 (334-418)||(30292300-30292384)
chr5 (345-418)||(16440192-16440265)
[»] chr1 (5 HSPs)
chr1 (335-415)||(10165605-10165685)
chr1 (340-418)||(25234015-25234093)
chr1 (432-495)||(10165736-10165799)
chr1 (334-417)||(25141268-25141351)
chr1 (334-393)||(16988782-16988841)
[»] chr6 (4 HSPs)
chr6 (342-418)||(20436070-20436146)
chr6 (342-418)||(20439778-20439854)
chr6 (342-418)||(20448560-20448636)
chr6 (336-418)||(34230703-34230786)
[»] chr8 (2 HSPs)
chr8 (336-391)||(30972641-30972696)
chr8 (336-418)||(31281034-31281118)
[»] chr7 (2 HSPs)
chr7 (336-418)||(5731873-5731955)
chr7 (334-391)||(20904417-20904474)


Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 205 - 509
Target Start/End: Original strand, 9440279 - 9440583
Alignment:
Q  205 tttttaaagtcaccagtcaagatcaaccttgagataccagtgtaactgatcaactaagtttcgactttatagaccataatatggtaataatgcatttggt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9440279 tttttaaagtcaccagtcaagatcaaccttgagataccagtgtaactgatcaactaagtttcgactttatagaccataatatggtaataatgcatttggt 9440378  T
Q  305 caaaacatcaagtcaaaatagcataactaacttttgttgaatttcaaacaatcatgtaattttaacgtaatgtcgaattgatttaatcttggtcaattgt 404  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9440379 caaaacatcaaatcaaaatagcataactaacttttgttgaatttcaaacaatcatgtaattttaacgtaatgtcgaattgatttaatcttggtcaattgt 9440478  T
Q  405 gaaagattatgtataggttgtactgattctgcaattgttgttttgaattacatgtaataaatatgccgaaatctaacttgattcttaaaacggaacccgt 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  9440479 gaaagattatgtataggttgtactgattctgcaattgttgttttgaattacaagtaataaatatgccgaaatctagcttgattcttaaaacggaacccgt 9440578  T
Q  505 tgctt 509  Q
    |||||    
T  9440579 tgctt 9440583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 9439921 - 9440102
Alignment:
Q  21 aaatcataacataaagacaatgaacgaggtaaagataagtgcactacaaatctacaactatctcttactcctaatgtatttttcaaattgataaaaagaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9439921 aaatcataacataaagacaatgaacgaggtaaagataagtgcactacaaatctacaactatctcttactcctaatgtatttttcaaattgataaaaagaa 9440020  T
Q  121 tcaaagaagcataactcttatttctcttttgaggtctctagaaggtttgttgcctctaaacaattagatactccaacattata 203  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9440021 tcaaagaagcataaatcttatttctcttttgaggtctctagaaggtttgttgcct-taaacaattagatactccaacattata 9440102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 242 - 335
Target Start/End: Original strand, 9412604 - 9412697
Alignment:
Q  242 cagtgtaactgatcaactaagtttcgactttatagaccataatatggtaataatgcatttggtcaaaacatcaagtcaaaatagcataactaac 335  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  9412604 cagtgtaactgatcaactaagtttcaactttatagaccataacatgataataatgcatttggtcaaaacatcaaatcaaaatagcataactaac 9412697  T

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Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 233 - 306
Target Start/End: Original strand, 9420076 - 9420149
Alignment:
Q  233 ttgagataccagtgtaactgatcaactaagtttcgactttatagaccataatatggtaataatgcatttggtca 306  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9420076 ttgagatacaagtgtaactgatcaactaagtttcgactttatagaccataatatgataataatgcatttggtca 9420149  T

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Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 244 - 335
Target Start/End: Original strand, 9356807 - 9356899
Alignment:
Q  244 gtgtaactgatcaactaagtttcgactttatag-accataatatggtaataatgcatttggtcaaaacatcaagtcaaaatagcataactaac 335  Q
    |||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||| ||||||| |||||||||||    
T  9356807 gtgtaattgatcaactaagtttcgactttatagcaccataatatgataataatgcatttggtcaaaacttcaaatcaaaatggcataactaac 9356899  T

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Target: chr3; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 243 - 335
Target Start/End: Original strand, 9401697 - 9401788
Alignment:
Q  243 agtgtaactgatcaactaagtttcgactttatag-accataatatggtaataatgcatttggtcaaaacatcaagtcaaaatagcataactaac 335  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||  |||||||| ||||||||||| |||||||    
T  9401697 agtgtaactgatcaactaagtttcgactttatagcaccataatatgataataatgcatttggtc--aacatcaaatcaaaatagcaaaactaac 9401788  T

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Target: chr3; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 336 - 418
Target Start/End: Complemental strand, 7314682 - 7314600
Alignment:
Q  336 ttttgttgaatttcaaacaatcatgtaattttaacgtaatgtcgaattgatttaatcttggtcaattgtgaaagattatgtat 418  Q
    ||||||||||||||||||| || | ||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||    
T  7314682 ttttgttgaatttcaaacattcgtataattttaacaaaatgtcgaattgatttaattttggtcaattgtgaaagattatgtat 7314600  T

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Target: chr3; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 51 - 194
Target Start/End: Original strand, 9356633 - 9356791
Alignment:
Q  51 aaagataagtgcactacaaatctacaactatctcttactcctaatgtatttttcaaattga-----------taa-----aaagaatcaaagaagcataa 134  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||           |||     ||||||||||||||||||||    
T  9356633 aaagataagtgcactacaggtctacaactatctcttactcctaatgtattttgcaaattgacagaaagattgtaatggagaaagaatcaaagaagcataa 9356732  T
Q  135 ctcttatttctcttttgaggtctctagaaggtttgttgcctctaaacaattagatactcc 194  Q
    |||||||||  ||||| | || | |||||||||||||||||||||| ||||| |||||||    
T  9356733 ctcttattttacttttcaagt-tttagaaggtttgttgcctctaaataattaaatactcc 9356791  T

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Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 336 - 418
Target Start/End: Complemental strand, 39964721 - 39964639
Alignment:
Q  336 ttttgttgaatttcaaacaatcatgtaattttaacgtaatgtcgaattgatttaatcttggtcaattgtgaaagattatgtat 418  Q
    |||| |||||||||||||| |||||||||||||||| |||||||||| |||||||| |||||||||  |||||  ||||||||    
T  39964721 ttttcttgaatttcaaacattcatgtaattttaacgaaatgtcgaatagatttaattttggtcaatcatgaaaatttatgtat 39964639  T

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Target: chr3; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 336 - 415
Target Start/End: Complemental strand, 35443411 - 35443333
Alignment:
Q  336 ttttgttgaatttcaaacaatcatgtaattttaacgtaatgtcgaattgatttaatcttggtcaattgtgaaagattatg 415  Q
    ||||||||||||||||||| || |||| |||||||| |||||| |||| ||||||| |||||||||||||||| ||||||    
T  35443411 ttttgttgaatttcaaacattcgtgta-ttttaacgaaatgtcaaattaatttaattttggtcaattgtgaaaaattatg 35443333  T

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Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 123 - 234
Target Start/End: Original strand, 9401515 - 9401623
Alignment:
Q  123 aaagaagcataactcttatttctcttttgaggtctctagaaggtttgttgcctctaaacaattagatactccaacattatagtttttaaagtcaccagtc 222  Q
    |||||| | ||||||||||||||||||| ||||||| |||| ||||||| ||||  |||||||| || |||| ||| |  | ||||||||||||||||||    
T  9401515 aaagaaccgtaactcttatttctcttttcaggtctc-agaaagtttgtttcctc--aacaattaaatgctcctacactggaatttttaaagtcaccagtc 9401611  T
Q  223 aagatcaacctt 234  Q
     |||||||||||    
T  9401612 gagatcaacctt 9401623  T

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Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 9432248 - 9432345
Alignment:
Q  121 tcaaagaagcataactcttatttctcttttgaggtctctagaaggtttgttgcctctaaacaattagatactccaacattatagtttttaaagtcaccag 220  Q
    |||||||| | ||||||||||||||||||| ||||||| |||| ||||||| ||||  |||||||| || |||| ||| || | ||||||||||||||||    
T  9432248 tcaaagaaccgtaactcttatttctcttttcaggtctc-agaaagtttgttccctc--aacaattaaatgctcctacactagaatttttaaagtcaccag 9432344  T

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Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 336 - 418
Target Start/End: Complemental strand, 31598797 - 31598716
Alignment:
Q  336 ttttgttgaatttcaaacaatcatgtaattttaacgtaatgtcgaattgatttaatcttggtcaattgtgaaagattatgtat 418  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||    
T  31598797 ttttgttgaatttcaaacattcatgtaattttaacg-aatgtcgaattgatttaattttgatcaattgtgaaagattatgtat 31598716  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 334 - 413
Target Start/End: Original strand, 1470438 - 1470517
Alignment:
Q  334 acttttgttgaatttcaaacaatcatgtaattttaacgtaatgtcgaattgatttaatcttggtcaattgtgaaagatta 413  Q
    ||||||||||||||||||||| || |||||| ||||| |||||||||||||||||||| ||  | |||| ||||||||||    
T  1470438 acttttgttgaatttcaaacattcgtgtaatgttaacttaatgtcgaattgatttaatgttaatgaattatgaaagatta 1470517  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 391
Target Start/End: Complemental strand, 6186954 - 6186899
Alignment:
Q  336 ttttgttgaatttcaaacaatcatgtaattttaacgtaatgtcgaattgatttaat 391  Q
    ||||| |||||||||||||  | ||||||||||||| ||||||| |||||||||||    
T  6186954 ttttgatgaatttcaaacatacgtgtaattttaacgaaatgtcggattgatttaat 6186899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 391
Target Start/End: Complemental strand, 6936229 - 6936172
Alignment:
Q  334 acttttgttgaatttcaaacaatcatgtaattttaacgtaatgtcgaattgatttaat 391  Q
    |||||||||||||||||| || || ||||||  | |||||||| ||||||||||||||    
T  6936229 acttttgttgaatttcaatcattcgtgtaatgctcacgtaatgccgaattgatttaat 6936172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 9e-25; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 336 - 418
Target Start/End: Original strand, 27733075 - 27733157
Alignment:
Q  336 ttttgttgaatttcaaacaatcatgtaattttaacgtaatgtcgaattgatttaatcttggtcaattgtgaaagattatgtat 418  Q
    |||||||| |||| ||||| |||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  27733075 ttttgttgtatttaaaacattcatataattttaacgaaatgtcgaattgatttaattttggtcaattgtgaaagattatgtat 27733157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 418
Target Start/End: Original strand, 42809350 - 42809431
Alignment:
Q  336 ttttgttgaatttcaaacaatcatgtaattttaacgtaatgtcgaattgatttaatcttggtcaattgtgaaagattatgtat 418  Q
    ||||||||||||||||||| || |||||||||| || |||||   ||||||||||| || |||||||||||||||||||||||    
T  42809350 ttttgttgaatttcaaacattcgtgtaatttta-cgaaatgtgagattgatttaattttagtcaattgtgaaagattatgtat 42809431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 336 - 418
Target Start/End: Complemental strand, 25613508 - 25613426
Alignment:
Q  336 ttttgttgaatttcaaacaatcatgtaattttaacgtaatgtcgaattgatttaatcttggtcaattgtgaaagattatgtat 418  Q
    ||||| ||||||||||||| || |||||||| |||  |||| |  ||||||||||| |||||||||||| |||||||||||||    
T  25613508 ttttgatgaatttcaaacattcttgtaatttaaacaaaatgcctgattgatttaattttggtcaattgtaaaagattatgtat 25613426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 334 - 417
Target Start/End: Complemental strand, 26832018 - 26831935
Alignment:
Q  334 acttttgttgaatttcaaacaatcatgtaattttaacgtaatgtcgaattgatttaatcttggtcaattgtgaaagattatgta 417  Q
    ||||||||||||||||||||| |  |||||| |||||||||||| ||| | ||||||| ||  | |||| ||||||||||||||    
T  26832018 acttttgttgaatttcaaacatttgtgtaatgttaacgtaatgttgaactaatttaatgttattgaattatgaaagattatgta 26831935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 391
Target Start/End: Original strand, 30939018 - 30939073
Alignment:
Q  336 ttttgttgaatttcaaacaatcatgtaattttaacgtaatgtcgaattgatttaat 391  Q
    ||||||| ||||||||||| || |||||| ||||||||||||| ||||||||||||    
T  30939018 ttttgttaaatttcaaacattcgtgtaatgttaacgtaatgtcaaattgatttaat 30939073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 468
Target Start/End: Complemental strand, 26228696 - 26228642
Alignment:
Q  414 tgtataggttgtactgattctgcaattgttgttttgaattacatgtaataaatat 468  Q
    |||||||||||||||   |||| |||||||||||||||||||| |||||||||||    
T  26228696 tgtataggttgtactacctctgaaattgttgttttgaattacaggtaataaatat 26228642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 418
Target Start/End: Complemental strand, 43668404 - 43668345
Alignment:
Q  359 tgtaattttaacgtaatgtcgaattgatttaatcttggtcaattgtgaaagattatgtat 418  Q
    ||||||||||| | ||| ||  ||||||||||| ||||||| ||||||||||||||||||    
T  43668404 tgtaattttaatgaaatatcagattgatttaattttggtcagttgtgaaagattatgtat 43668345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 334 - 418
Target Start/End: Complemental strand, 30292384 - 30292300
Alignment:
Q  334 acttttgttgaatttcaaacaatcatgtaattttaacgtaatgtcgaattgatttaatcttggtcaattgtgaaagattatgtat 418  Q
    |||||||||||||||| |||| || ||||||||||||| ||||||||||||||||||| ||||||||||||  || |||||||||    
T  30292384 acttttgttgaatttcgaacattcgtgtaattttaacgaaatgtcgaattgatttaattttggtcaattgtacaaaattatgtat 30292300  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 418
Target Start/End: Original strand, 16440192 - 16440265
Alignment:
Q  345 atttcaaacaatcatgtaattttaacgtaatgtcgaattgatttaatcttggtcaattgtgaaagattatgtat 418  Q
    |||| ||||| || ||||||||||||| ||| ||| |||||||||||  ||||||||| | ||| |||||||||    
T  16440192 attttaaacattcgtgtaattttaacgaaatatcggattgatttaattatggtcaattctaaaatattatgtat 16440265  T

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Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 335 - 415
Target Start/End: Original strand, 10165605 - 10165685
Alignment:
Q  335 cttttgttgaatttcaaacaatcatgtaattttaacgtaatgtcgaattgatttaatcttggtcaattgtgaaagattatg 415  Q
    |||||||||||||||||||| || ||||||||||||  ||||| ||||||||||||| || |||||| |||||||||||||    
T  10165605 cttttgttgaatttcaaacattcgtgtaattttaacaaaatgttgaattgatttaatttttgtcaatggtgaaagattatg 10165685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 340 - 418
Target Start/End: Original strand, 25234015 - 25234093
Alignment:
Q  340 gttgaatttcaaacaatcatgtaattttaacgtaatgtcgaattgatttaatcttggtcaattgtgaaagattatgtat 418  Q
    ||||||||||||||| || ||| ||||||||| ||||| ||||| ||||||| ||| ||||||||||||||||||||||    
T  25234015 gttgaatttcaaacattcgtgttattttaacgaaatgttgaattaatttaattttgatcaattgtgaaagattatgtat 25234093  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 432 - 495
Target Start/End: Original strand, 10165736 - 10165799
Alignment:
Q  432 tctgcaattgttgttttgaattacatgtaataaatatgccgaaatctaacttgattcttaaaac 495  Q
    |||| ||||||||||||||||||||||||||||||| |||||||| | || ||||||| |||||    
T  10165736 tctgaaattgttgttttgaattacatgtaataaataggccgaaatttgacatgattctcaaaac 10165799  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 417
Target Start/End: Original strand, 25141268 - 25141351
Alignment:
Q  334 acttttgttgaatttcaaacaatcatgtaattttaacgtaatgtcgaattgatttaatcttggtcaattgtgaaagattatgta 417  Q
    ||||||||||||||||||||| || |||||| ||||| || ||||||||||||||||| ||  | |||| ||||| ||||||||    
T  25141268 acttttgttgaatttcaaacattcgtgtaatgttaacttagtgtcgaattgatttaatgttaatgaattatgaaaaattatgta 25141351  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 334 - 393
Target Start/End: Original strand, 16988782 - 16988841
Alignment:
Q  334 acttttgttgaatttcaaacaatcatgtaattttaacgtaatgtcgaattgatttaatct 393  Q
    |||||||||||||||||| || || |||||| || |||| ||||||||||||||||||||    
T  16988782 acttttgttgaatttcaatcattcgtgtaatgttcacgtgatgtcgaattgatttaatct 16988841  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 418
Target Start/End: Original strand, 20436070 - 20436146
Alignment:
Q  342 tgaatttcaaacaatcatgtaattttaacgtaatgtcgaattgatttaatcttggtcaattgtgaaagattatgtat 418  Q
    ||||||||||||| ||||||||||||||   ||||||| |||||||||||| ||| ||| ||| |||||| ||||||    
T  20436070 tgaatttcaaacattcatgtaattttaataaaatgtcggattgatttaatcatggacaactgtaaaagataatgtat 20436146  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 418
Target Start/End: Original strand, 20439778 - 20439854
Alignment:
Q  342 tgaatttcaaacaatcatgtaattttaacgtaatgtcgaattgatttaatcttggtcaattgtgaaagattatgtat 418  Q
    ||||||||||||| || ||||||||||||  ||||||| |||||||||||  ||| ||| ||| |||||| ||||||    
T  20439778 tgaatttcaaacattcctgtaattttaacaaaatgtcggattgatttaattatggacaactgtaaaagataatgtat 20439854  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 418
Target Start/End: Original strand, 20448560 - 20448636
Alignment:
Q  342 tgaatttcaaacaatcatgtaattttaacgtaatgtcgaattgatttaatcttggtcaattgtgaaagattatgtat 418  Q
    ||||||||||||| || | ||||||||||| ||||||| |||||||||||  ||| ||| ||| |||||| ||||||    
T  20448560 tgaatttcaaacattcctctaattttaacgaaatgtcggattgatttaattatggacaactgtaaaagataatgtat 20448636  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 418
Target Start/End: Complemental strand, 34230786 - 34230703
Alignment:
Q  336 ttttgttgaatttcaaa-caatcatgtaattttaacgtaatgtcgaattgatttaatcttggtcaattgtgaaagattatgtat 418  Q
    ||||| ||||||||||| || |||||||||||||||| |||||||  ||||||||||  | | ||||||| |||||| ||||||    
T  34230786 ttttgatgaatttcaaagcattcatgtaattttaacgaaatgtcggtttgatttaattatagacaattgtaaaagataatgtat 34230703  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 391
Target Start/End: Original strand, 30972641 - 30972696
Alignment:
Q  336 ttttgttgaatttcaaacaatcatgtaattttaacgtaatgtcgaattgatttaat 391  Q
    ||||| ||||||||||||| || ||||||||||||| ||||| |||||||||||||    
T  30972641 ttttgatgaatttcaaacattcgtgtaattttaacgaaatgttgaattgatttaat 30972696  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 418
Target Start/End: Complemental strand, 31281118 - 31281034
Alignment:
Q  336 ttttgttgaatttcaaacaatcatgtaa--ttttaacgtaatgtcgaattgatttaatcttggtcaattgtgaaagattatgtat 418  Q
    ||||| ||||||||||||| || |||||  |||||||| ||||||  |||||||||||    ||||||||| |||||||||||||    
T  31281118 ttttgatgaatttcaaacattcgtgtaaaattttaacgaaatgtcagattgatttaattacagtcaattgtaaaagattatgtat 31281034  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 418
Target Start/End: Complemental strand, 5731955 - 5731873
Alignment:
Q  336 ttttgttgaatttcaaacaatcatgtaattttaacgtaatgtcgaattgatttaatcttggtcaattgtgaaagattatgtat 418  Q
    ||||||||||||| ||||  || |||||| |||||| |||| | |||| ||||||| ||| |||||||||| |||||||||||    
T  5731955 ttttgttgaatttaaaacgttcgtgtaatattaacgaaatgccaaatttatttaattttgatcaattgtgatagattatgtat 5731873  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 391
Target Start/End: Complemental strand, 20904474 - 20904417
Alignment:
Q  334 acttttgttgaatttcaaacaatcatgtaattttaacgtaatgtcgaattgatttaat 391  Q
    ||||||| ||||||||||  | || |||| | ||||||||||||||||||||||||||    
T  20904474 acttttgctgaatttcaattattcgtgtattgttaacgtaatgtcgaattgatttaat 20904417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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