View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1751-Insertion-13 (Length: 350)
Name: NF1751-Insertion-13
Description: NF1751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1751-Insertion-13 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 8 - 350
Target Start/End: Complemental strand, 47168201 - 47167862
Alignment:
| Q |
8 |
gtatttaatgtatctcgcaaatagagaacaatagaagttcaactaaatgtttagaaccagactactgtgatagatgatggatgtgctaacacagaagctt |
107 |
Q |
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| T |
47168201 |
gtatttaatgtatctcgcaaatagagaacaatagaagttcaactaaatgtttagaaccagactactgtgatagatgatggatgtgctaacacagaagctt |
47168102 |
T |
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| Q |
108 |
gaatgagttttgattttccaataactttacacaataactcttaatcataatctaagatcagagttatcgaagttccatataaaaaattgaagcaataact |
207 |
Q |
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| T |
47168101 |
gaatgagttttgattttccaataactttacacaataactcttaatcataatctaagctcagagttatcgaagttccatataaaaaattgaagcaataact |
47168002 |
T |
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| Q |
208 |
gtcattataaagtactaactggttgatagtctttactccgaacaagtataggtctgtcaacattctcaggatcatagggatcgccgccattgaagaagtc |
307 |
Q |
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| T |
47168001 |
atcattataaagtactaactggttgatggtctttactccgaacaagtataggtctgtcaacattctcaggatcatagggat---cgccattgaagaaatc |
47167905 |
T |
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| Q |
308 |
aggaacaaccacataatacccagttgctgcaaccttgtctgca |
350 |
Q |
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| T |
47167904 |
aggaacaaccacataatacccagttgctgcaaccttgtctgca |
47167862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 216 - 346
Target Start/End: Complemental strand, 48714765 - 48714638
Alignment:
| Q |
216 |
aaagtactaactggttgatagtctttactccgaacaagtataggtctgtcaacattctcaggatcatagggatcgccgccattgaagaagtcaggaacaa |
315 |
Q |
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| T |
48714765 |
aaagtactaactggcagatggtctttcacccaaacatctataggtctgtcaacattccgaggatcatagggatctccg---ttgaagaagtcgggaacca |
48714669 |
T |
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| Q |
316 |
ccacataatacccagttgctgcaaccttgtc |
346 |
Q |
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| T |
48714668 |
ccacataatacccggttgctgcaaccttgtc |
48714638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 48715272 - 48715213
Alignment:
| Q |
69 |
ctactgtgatagatgatggatgtgctaacacagaagcttgaatgagttttgattttccaa |
128 |
Q |
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| T |
48715272 |
ctactgtgatgtatgatggatgtgctaacacagcagcttgaatgagtttggatttcccaa |
48715213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 48702846 - 48702787
Alignment:
| Q |
69 |
ctactgtgatagatgatggatgtgctaacacagaagcttgaatgagttttgattttccaa |
128 |
Q |
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| T |
48702846 |
ctactgtgattaatgatggatgtgccaacacaacagcttgaatgagtttggatttcccaa |
48702787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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