View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1751-Insertion-14 (Length: 411)
Name: NF1751-Insertion-14
Description: NF1751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1751-Insertion-14 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 11 - 402
Target Start/End: Original strand, 12813312 - 12813698
Alignment:
| Q |
11 |
taggtcttcaaattagagaaggattgaagaaaatgaatagcttcaaaagatacaatgtttctttccaatcattctcctgcatcgacgaaattgaaaagct |
110 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
12813312 |
taggtcttcaaattagagaagaattgaagaaaatgaatagcttcaaaagatacaatgtttctttccaatcattctcctgcatcgacgaaattgaaaagtt |
12813411 |
T |
|
| Q |
111 |
tcaaatatcattatctctttctttgaaacccataaatcatctctatcattgtttgaattgnnnnnnnnngaaagaggaagagtaagattggtgattagtt |
210 |
Q |
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| T |
12813412 |
tcaaatatcattatctctttctttgaaacccataaatcatctctatcactgtttgaattgaaacaaa--gaaagaggaagagtaagattggtgattagtt |
12813509 |
T |
|
| Q |
211 |
tcgtttgagggtttgacagatgattgcaaaagtggttttctaacaccagtaagagaatgatcatacattccaataacctcctgaagagccaacttcctca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12813510 |
tcgtttgagggtttgacagatgattgcaaaagtggttttctaacaccagtaagagaatgatcatacattccaataacctcctgaagagccaacttcctca |
12813609 |
T |
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| Q |
311 |
actcttcttgtaggccatcaccagtaagccacccacgaaacacaccacgatccaacaaatacacaattgactgccgccacatatatattttt |
402 |
Q |
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| T |
12813610 |
actcttcttgtaggccatcaccagtaagccacccacgaaacacaccacgatccaacaaatacacaattga---ccgccacatatatattttt |
12813698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 146; Significance: 9e-77; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 11 - 164
Target Start/End: Original strand, 22418152 - 22418305
Alignment:
| Q |
11 |
taggtcttcaaattagagaaggattgaagaaaatgaatagcttcaaaagatacaatgtttctttccaatcattctcctgcatcgacgaaattgaaaagct |
110 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22418152 |
taggtcttcaaattagagtaggattgaagaaaatgaatagcttcaaaagatacaatgtttctttccaatcattctcctgcatcgacgaaattgaaaagct |
22418251 |
T |
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| Q |
111 |
tcaaatatcattatctctttctttgaaacccataaatcatctctatcattgttt |
164 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22418252 |
tcaaatatcattatctctttctttgaaacccatatatcatctctatcattgttt |
22418305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 304 - 378
Target Start/End: Original strand, 22418304 - 22418378
Alignment:
| Q |
304 |
ttcctcaactcttcttgtaggccatcaccagtaagccacccacgaaacacaccacgatccaacaaatacacaatt |
378 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22418304 |
ttcctcaactcttcttgtaggccatcactagtaagccacccacgaaacacaccacgatccaacaaatacgcaatt |
22418378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 261 - 378
Target Start/End: Original strand, 30621994 - 30622111
Alignment:
| Q |
261 |
aagagaatgatcatacattccaataacctcctgaagagccaacttcctcaactcttcttgtaggccatcaccagtaagccacccacgaaacacaccacga |
360 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
30621994 |
aagagaatgatcgtacattccaataacctcgtgaagagccaacttcctcaactcctcttgtgggccatcaccagtaagccacccacgaaaaacaccacga |
30622093 |
T |
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| Q |
361 |
tccaacaaatacacaatt |
378 |
Q |
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|||||||||||| ||||| |
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| T |
30622094 |
tccaacaaatacgcaatt |
30622111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 69 - 170
Target Start/End: Original strand, 14998348 - 14998449
Alignment:
| Q |
69 |
ttctttccaatcattctcctgcatcgacgaaattgaaaagcttcaaatatcattatctctttctttgaaacccataaatcatctctatcattgtttgaat |
168 |
Q |
| |
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||||||| |||| ||||| || ||| || |||||||||||||| |||||||||||||||||||||| ||||||| ||||||||| ||||| ||||||||| |
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| T |
14998348 |
ttctttcaaatctttctcatgtatctacaaaattgaaaagcttaaaatatcattatctctttctttcaaacccagaaatcatctttatcactgtttgaat |
14998447 |
T |
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| Q |
169 |
tg |
170 |
Q |
| |
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|| |
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|
| T |
14998448 |
tg |
14998449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 48292701 - 48292638
Alignment:
| Q |
188 |
aagagtaagattggtgattagtttcgtttgagggtttgacagatgattgcaaaagtggttttct |
251 |
Q |
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|||||| ||| |||||||||||| |||||||||||||||||||||| |||||||||| ||||| |
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| T |
48292701 |
aagagtgagaatggtgattagttacgtttgagggtttgacagatgagagcaaaagtggctttct |
48292638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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