View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1751-Insertion-17 (Length: 339)
Name: NF1751-Insertion-17
Description: NF1751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1751-Insertion-17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 8 - 337
Target Start/End: Original strand, 27775018 - 27775347
Alignment:
| Q |
8 |
gaacgaacatgaactagcactttttgtagtaaaaagacatggaacttcagctatgggagctcttgctgaacatataaggaagataaatgccatcacaact |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27775018 |
gaacgaacatgaactagcactttttgtagtaaaaagagatggaacttcagctatgggagctcttgctgaacatataaggaagataaatgccatcacaact |
27775117 |
T |
|
| Q |
108 |
ttattggaaggcaaaaaagcagcaattcttctgcagcttaaacatgtattgtctcccaccttttatgttttgtcttgaaagtttagtttgttattttaga |
207 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27775118 |
ttattggaaggcaaaaaagcaacaattcttctgcagcttaaacatgtattgtctcccaccttttatgttttgtctttaaagtttagtttgttattttaga |
27775217 |
T |
|
| Q |
208 |
attaattgcatctatatccatcacaattattatctctaatcatacttaacatctaaataatcaagatgctgaaataatcttttagcctattcagttgagc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27775218 |
attaattgcatctatatccatcacaattattatctctaatcatacttaacatctaaataatcaagatgctgaaataatcttttagcctattcagttgagc |
27775317 |
T |
|
| Q |
308 |
tcatatgctgaaataacatttgcccgatag |
337 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |
|
|
| T |
27775318 |
tcatatgctggaataacatttgcccgatag |
27775347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 178 - 309
Target Start/End: Original strand, 27764322 - 27764453
Alignment:
| Q |
178 |
tgtcttgaaagtttagtttgttattttagaattaattgcatctatatccatcacaattattatctctaatcatacttaacatctaaataatcaagatgct |
277 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||| ||||||||| || |||||| |||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27764322 |
tgtcttgaaagtttggtttggtattttagaattgattgcatctcaattcatcactattaatatctctaatcttacttaacatctaaataatcaagatgct |
27764421 |
T |
|
| Q |
278 |
gaaataatcttttagcctattcagttgagctc |
309 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |
|
|
| T |
27764422 |
gaaataatcttttagcctattccgttgagctc |
27764453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 170 - 290
Target Start/End: Original strand, 27799689 - 27799814
Alignment:
| Q |
170 |
ttatgttttgtcttgaaagtttagtttgttattttagaattaattgcatctatatccatcacaattattatctctaatcatactta-----acatctaaa |
264 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||||||||||| || ||| | |||| ||||||||||||||| | |||||||| |
|
|
| T |
27799689 |
ttatgttttctcttgaaagtttagtttggtattttagaattaattgcatcttagtctatctctgttatcatctctaatcatactaattactccatctaaa |
27799788 |
T |
|
| Q |
265 |
taatcaagatgctgaaataatctttt |
290 |
Q |
| |
|
||||||||||||| || ||||||||| |
|
|
| T |
27799789 |
taatcaagatgctaaactaatctttt |
27799814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University