View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1751-Insertion-2 (Length: 827)

Name: NF1751-Insertion-2
Description: NF1751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1751-Insertion-2
NF1751-Insertion-2
[»] chr7 (29 HSPs)
chr7 (7-591)||(3615070-3615654)
chr7 (7-271)||(5568450-5568703)
chr7 (612-827)||(3615650-3615866)
chr7 (7-238)||(35611258-35611475)
chr7 (254-332)||(41957697-41957775)
chr7 (256-321)||(3614396-3614461)
chr7 (261-336)||(42013598-42013673)
chr7 (254-339)||(45075205-45075290)
chr7 (273-336)||(42014593-42014656)
chr7 (290-336)||(2204018-2204064)
chr7 (279-336)||(1805098-1805155)
chr7 (256-336)||(47317784-47317864)
chr7 (256-327)||(5569327-5569398)
chr7 (261-336)||(40792955-40793030)
chr7 (290-336)||(17185160-17185206)
chr7 (257-336)||(18791929-18792008)
chr7 (256-310)||(34192007-34192061)
chr7 (275-336)||(6272448-6272509)
chr7 (256-337)||(41964785-41964866)
chr7 (256-336)||(1299068-1299148)
chr7 (256-336)||(10555072-10555152)
chr7 (253-301)||(40446520-40446568)
chr7 (281-336)||(39881341-39881396)
chr7 (290-336)||(2206304-2206350)
chr7 (254-332)||(10552700-10552778)
chr7 (290-336)||(22292800-22292846)
chr7 (295-336)||(42736966-42737007)
chr7 (290-335)||(47943253-47943298)
chr7 (290-335)||(47948683-47948728)
[»] scaffold1903 (2 HSPs)
scaffold1903 (15-336)||(276-580)
scaffold1903 (256-293)||(1162-1199)
[»] chr4 (41 HSPs)
chr4 (15-275)||(9981226-9981475)
chr4 (7-267)||(20855497-20855740)
chr4 (7-148)||(46355899-46356035)
chr4 (256-336)||(9981107-9981187)
chr4 (290-336)||(10466540-10466586)
chr4 (252-333)||(15502806-15502887)
chr4 (259-336)||(22438580-22438657)
chr4 (298-336)||(2332757-2332795)
chr4 (290-336)||(2567256-2567302)
chr4 (287-336)||(205263-205312)
chr4 (256-337)||(12028355-12028436)
chr4 (256-337)||(40729907-40729988)
chr4 (260-336)||(36390756-36390832)
chr4 (296-336)||(36774643-36774683)
chr4 (256-336)||(43036471-43036551)
chr4 (290-336)||(40729235-40729281)
chr4 (290-336)||(48093238-48093284)
chr4 (290-336)||(49792978-49793024)
chr4 (290-336)||(52073507-52073553)
chr4 (295-336)||(46518353-46518394)
chr4 (295-336)||(51025989-51026030)
chr4 (256-336)||(2333824-2333904)
chr4 (256-336)||(32715269-32715349)
chr4 (256-336)||(39390900-39390980)
chr4 (290-333)||(9617212-9617255)
chr4 (273-336)||(12024501-12024564)
chr4 (256-335)||(17915134-17915213)
chr4 (260-335)||(22436038-22436113)
chr4 (253-336)||(35430497-35430580)
chr4 (257-336)||(43035767-43035846)
chr4 (290-349)||(43890409-43890468)
chr4 (538-581)||(52005161-52005204)
chr4 (290-336)||(9618430-9618476)
chr4 (290-336)||(21168417-21168463)
chr4 (290-336)||(26592858-26592904)
chr4 (290-336)||(35142840-35142886)
chr4 (256-302)||(36505759-36505805)
chr4 (290-336)||(45936606-45936652)
chr4 (290-336)||(49790617-49790663)
chr4 (290-336)||(51029611-51029657)
chr4 (298-339)||(20902524-20902565)
[»] chr3 (42 HSPs)
chr3 (7-151)||(33130295-33130445)
chr3 (7-272)||(54670699-54670939)
chr3 (449-605)||(34732003-34732160)
chr3 (261-336)||(52560282-52560357)
chr3 (256-336)||(38108772-38108852)
chr3 (256-336)||(55146562-55146642)
chr3 (277-336)||(45031513-45031572)
chr3 (256-336)||(30715874-30715954)
chr3 (256-331)||(18946544-18946619)
chr3 (256-327)||(48165255-48165326)
chr3 (290-336)||(10036826-10036872)
chr3 (256-336)||(45035108-45035188)
chr3 (269-336)||(18942600-18942667)
chr3 (290-336)||(34470241-34470287)
chr3 (295-336)||(40469257-40469298)
chr3 (299-336)||(51017283-51017320)
chr3 (256-336)||(13931-14011)
chr3 (256-336)||(44006395-44006475)
chr3 (256-336)||(44846956-44847036)
chr3 (260-336)||(51014279-51014355)
chr3 (162-255)||(33130573-33130659)
chr3 (290-336)||(11377182-11377228)
chr3 (254-336)||(18912257-18912339)
chr3 (290-336)||(30194522-30194568)
chr3 (298-336)||(37268112-37268150)
chr3 (290-336)||(37718092-37718138)
chr3 (290-336)||(42321719-42321765)
chr3 (290-336)||(45266536-45266582)
chr3 (260-334)||(54922555-54922628)
chr3 (290-335)||(21196603-21196648)
chr3 (295-335)||(50457430-50457470)
chr3 (261-309)||(51011577-51011625)
chr3 (256-336)||(55151327-55151407)
chr3 (261-336)||(33942733-33942808)
chr3 (290-333)||(54921405-54921448)
chr3 (254-336)||(2286024-2286106)
chr3 (290-336)||(30191665-30191711)
chr3 (250-336)||(44810654-44810740)
chr3 (290-336)||(46412470-46412516)
chr3 (290-336)||(48098159-48098205)
chr3 (290-327)||(44926782-44926819)
chr3 (290-327)||(46415232-46415269)
[»] chr2 (22 HSPs)
chr2 (21-151)||(15480331-15480461)
chr2 (256-336)||(19507798-19507878)
chr2 (260-333)||(44070750-44070823)
chr2 (256-336)||(22712187-22712267)
chr2 (290-339)||(10602229-10602278)
chr2 (290-336)||(6978812-6978858)
chr2 (290-336)||(23719308-23719354)
chr2 (290-336)||(24106980-24107026)
chr2 (251-336)||(2121284-2121369)
chr2 (251-336)||(13329744-13329829)
chr2 (256-336)||(31500780-31500860)
chr2 (290-336)||(15630464-15630510)
chr2 (256-336)||(40614741-40614822)
chr2 (260-336)||(1481056-1481132)
chr2 (256-336)||(2119445-2119525)
chr2 (256-336)||(4425878-4425958)
chr2 (256-336)||(28654700-28654780)
chr2 (256-335)||(17112305-17112384)
chr2 (256-335)||(34519902-34519981)
chr2 (290-336)||(5422310-5422356)
chr2 (290-336)||(31297640-31297686)
chr2 (259-336)||(31435032-31435109)
[»] chr8 (18 HSPs)
chr8 (7-271)||(14735301-14735550)
chr8 (256-336)||(16583190-16583270)
chr8 (253-336)||(6253302-6253385)
chr8 (277-336)||(41270323-41270382)
chr8 (290-336)||(42167150-42167196)
chr8 (280-336)||(40494103-40494159)
chr8 (250-301)||(20086221-20086272)
chr8 (253-336)||(42095411-42095494)
chr8 (290-336)||(33074862-33074908)
chr8 (260-333)||(8037288-8037361)
chr8 (295-332)||(19243194-19243231)
chr8 (295-332)||(19316378-19316415)
chr8 (298-335)||(26488536-26488573)
chr8 (290-336)||(2809247-2809293)
chr8 (254-336)||(6253582-6253664)
chr8 (290-336)||(8036250-8036296)
chr8 (290-336)||(40678292-40678338)
chr8 (286-335)||(20495562-20495611)
[»] chr6 (4 HSPs)
chr6 (256-336)||(5620755-5620835)
chr6 (257-336)||(5613795-5613874)
chr6 (290-337)||(9904654-9904701)
chr6 (256-336)||(33523898-33523978)
[»] chr5 (28 HSPs)
chr5 (256-336)||(27014639-27014719)
chr5 (290-339)||(22965776-22965825)
chr5 (290-336)||(8214319-8214365)
chr5 (256-326)||(9042440-9042510)
chr5 (256-334)||(36759196-36759274)
chr5 (275-336)||(10825306-10825367)
chr5 (261-333)||(12936260-12936332)
chr5 (256-336)||(23067661-23067741)
chr5 (290-333)||(12950415-12950458)
chr5 (290-336)||(1690357-1690403)
chr5 (290-332)||(7483698-7483740)
chr5 (290-336)||(7486620-7486666)
chr5 (298-336)||(22964667-22964705)
chr5 (290-336)||(36351291-36351337)
chr5 (290-336)||(39939961-39940007)
chr5 (279-327)||(3778469-3778517)
chr5 (256-336)||(19870452-19870532)
chr5 (388-472)||(27408236-27408320)
chr5 (287-335)||(34394213-34394261)
chr5 (256-336)||(43294196-43294276)
chr5 (290-337)||(2401754-2401801)
chr5 (290-333)||(2897954-2897997)
chr5 (290-337)||(2899098-2899145)
chr5 (254-305)||(34394010-34394061)
chr5 (290-336)||(7263380-7263426)
chr5 (289-330)||(6791649-6791690)
chr5 (252-333)||(12075866-12075947)
chr5 (260-337)||(17646609-17646686)
[»] chr1 (23 HSPs)
chr1 (254-333)||(18239454-18239533)
chr1 (290-336)||(17684490-17684536)
chr1 (290-336)||(39855426-39855472)
chr1 (261-336)||(42463201-42463276)
chr1 (253-336)||(45471404-45471487)
chr1 (290-336)||(12792326-12792372)
chr1 (256-336)||(15291150-15291230)
chr1 (300-336)||(33286249-33286285)
chr1 (256-336)||(38043386-38043466)
chr1 (256-319)||(13706103-13706166)
chr1 (258-336)||(33216334-33216412)
chr1 (298-336)||(51936620-51936658)
chr1 (287-336)||(4911554-4911603)
chr1 (256-333)||(18981486-18981563)
chr1 (256-337)||(21761276-21761357)
chr1 (387-472)||(24722559-24722644)
chr1 (256-337)||(50915336-50915417)
chr1 (272-336)||(27105627-27105691)
chr1 (259-335)||(37770195-37770271)
chr1 (290-336)||(15356394-15356440)
chr1 (290-336)||(23344497-23344543)
chr1 (295-336)||(28861925-28861966)
chr1 (290-331)||(37505025-37505066)
[»] scaffold0325 (1 HSPs)
scaffold0325 (256-336)||(2813-2893)
[»] scaffold0146 (3 HSPs)
scaffold0146 (256-333)||(32326-32402)
scaffold0146 (256-336)||(24432-24512)
scaffold0146 (256-333)||(29984-30060)
[»] scaffold1043 (1 HSPs)
scaffold1043 (260-336)||(2604-2680)
[»] scaffold0688 (1 HSPs)
scaffold0688 (256-336)||(5915-5995)
[»] scaffold0004 (2 HSPs)
scaffold0004 (290-336)||(130566-130612)
scaffold0004 (260-336)||(127204-127280)
[»] scaffold0530 (1 HSPs)
scaffold0530 (252-333)||(7624-7705)
[»] scaffold0589 (1 HSPs)
scaffold0589 (290-336)||(5576-5622)


Alignment Details
Target: chr7 (Bit Score: 545; Significance: 0; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 7 - 591
Target Start/End: Original strand, 3615070 - 3615654
Alignment:
Q  7 aaaaccagataaaaatgttcatgttaatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgattttatg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3615070 aaaaccagataaaaatgttcatgttaatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgattttatg 3615169  T
Q  107 ggtaggcctatttgtttcaagaggagatcagaggaagaaacacaaaggatttgagaaggaattgagttgaatgcttctgaaaattttgtttgtattgctg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  3615170 ggtaggcctatttgtttcaagaggagatcagaggaagaaacacaaaggatttgagaaggaattgagttgaatgcttctgaaaattttgtttgtattgttg 3615269  T
Q  207 tgacctatgatggaagcactttgtagtcatttgactaataaatattcagcggtagttaactaccgttgggggcatttacgtattttaattgtgtcaatag 306  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3615270 tgacctatgatggaagcactttgtagtcatttgactaataagtattcagcgatagttaactaccgttgggggcatttacgtattttatttgtgtcaatag 3615369  T
Q  307 gaagtattcattgtcaaaaaagcaattttcccagagaaaaaccctagcgccattcaattttgaaaaaccctaaaccctaaagaaagcttttgggttgatt 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  3615370 gaagtattcattgtcaaaaaagcaattttcccagagaaaaaccctagcgccgttcagttttgaaaaaccctaaaccctaaagaaagcttttgggttgatt 3615469  T
Q  407 tggcatgccactatatggacgatatggaggtagagaaacgtgaggattttcaaaaaccaattcaagtgtattgatgagttggtggatgaggttaagactt 506  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3615470 tggcatgccactatatggacgatttggaggtagagaaacgtgaggattttcaaaaaccaattcaagtgtattgatgagttggtggatgaggttaagactt 3615569  T
Q  507 tgtcttggtgttgggcttaaataggtctcgaattgcatcttgcctattctatgagtgatgttggaatccaagggattgcttcctt 591  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||    
T  3615570 tgtcttggtgttgggcttaaataggtctcgaattgcatcttacctattctatgagtggtgtgggaatccaagggattgcttcctt 3615654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 7 - 271
Target Start/End: Complemental strand, 5568703 - 5568450
Alignment:
Q  7 aaaaccagataaaaatgttcatgttaatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgattttatg 106  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5568703 aaaactagataaaaatgttcatgttaatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgatttcatg 5568604  T
Q  107 ggtaggcctatttgtttcaagaggagatcagaggaagaaacacaaaggatttgagaaggaattgagttgaatgcttctgaaaattttgtttgtattgctg 206  Q
    |||||||||||||||||||||||||||| ||||||||||||||||           ||||||||| ||||||||||||||||||||||||||||||| ||    
T  5568603 ggtaggcctatttgtttcaagaggagattagaggaagaaacacaa-----------aggaattgaattgaatgcttctgaaaattttgtttgtattgttg 5568515  T
Q  207 tgacctatgatggaagcactttgtagtcatttgactaataaatattcagcggtagttaactaccg 271  Q
    |||||| ||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||    
T  5568514 tgacctgtgatggaagcactttgtagtcatttgactaacaagtattcaacggtagttaactaccg 5568450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 612 - 827
Target Start/End: Original strand, 3615650 - 3615866
Alignment:
Q  612 tcctcgtataggggatttttagacagcagctggggtatattttgggcagttttctcggctgttaatgctggtgtttgcagcttccgctgtcatgcccggc 711  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3615650 tccttgtataggggatttttagacagcagctggggtatattttgggcagttttctcggctgttaatgctggtgtgtgcagcttccgctgtcatgcccggc 3615749  T
Q  712 aaaaccaacagtcgttggtttttatctctgtttttgcgcctttgtcgcttgctttctggtatattggcttttgcttttgtaggatcatctgttg-tttta 810  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3615750 aaaaccagcagtcgttggtttttatctctgtttttgcgcctttgtcacttgctttctggtatattggcttttgcttttgtaggatcatctgttgttttta 3615849  T
Q  811 ttttcttgcctttgtcg 827  Q
    ||| |||||||||||||    
T  3615850 tttccttgcctttgtcg 3615866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 7 - 238
Target Start/End: Complemental strand, 35611475 - 35611258
Alignment:
Q  7 aaaaccagataaaaatgttcatgttaatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgattttatg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||   |||||||||||||||||||| |||    
T  35611475 aaaaccagataaaaatgttcatgttaatctcataaaacaagaacaggatgaagttgttgatggtgatggtgaa---gaaggttaaacaattgatttcatg 35611379  T
Q  107 ggtaggcctatttgtttcaagaggagatcagaggaagaaacacaaaggatttgagaaggaattgagttgaatgcttctgaaaattttgtttgtattgctg 206  Q
    ||||  | ||||||||||| |||||||| |||||||||||||||           |||||||||| |||| |||||| |||||||||||||  |||| ||    
T  35611378 ggtaaacttatttgtttcatgaggagattagaggaagaaacaca-----------aaggaattgaattgattgcttccgaaaattttgtttaaattgttg 35611290  T
Q  207 tgacctatgatggaagcactttgtagtcattt 238  Q
    | ||||  ||||||||||||||||||||||||    
T  35611289 taacctgcgatggaagcactttgtagtcattt 35611258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 254 - 332
Target Start/End: Complemental strand, 41957775 - 41957697
Alignment:
Q  254 agcggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaat 332  Q
    |||||| ||||||| |||||||||||||||||||||||||  |||||||||||||||  ||||||||||||||||||||    
T  41957775 agcggttgttaactgccgttgggggcatttacgtattttacgtgtgtcaataggaaggtttcattgtcaaaaaagcaat 41957697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 256 - 321
Target Start/End: Complemental strand, 3614461 - 3614396
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtc 321  Q
    |||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  3614461 cggtagttaactaccgctgggggcatttacgtattttacttgtgttaataggaagtattcattgtc 3614396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 261 - 336
Target Start/End: Complemental strand, 42013673 - 42013598
Alignment:
Q  261 gttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||    
T  42013673 gttaactaccggtaagggcatttacgtattttacttgtgtcaataggaagatttcattgtcaaaaaagcaattttc 42013598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 254 - 339
Target Start/End: Complemental strand, 45075290 - 45075205
Alignment:
Q  254 agcggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttccca 339  Q
    |||||| ||||||| ||| |||||||||||  |||||||| ||||||||||||||||| |||||||||| |||| |||||||||||    
T  45075290 agcggttgttaactgccgctgggggcattttagtattttacttgtgtcaataggaagttttcattgtcagaaaaacaattttccca 45075205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 273 - 336
Target Start/End: Original strand, 42014593 - 42014656
Alignment:
Q  273 tgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    ||||||||||||||||||||| |||||||||||| || | |||||||||| |||||||||||||    
T  42014593 tgggggcatttacgtattttacttgtgtcaatagaaatttttcattgtcagaaaagcaattttc 42014656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 2204064 - 2204018
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  2204064 tttacttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 2204018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 279 - 336
Target Start/End: Original strand, 1805098 - 1805155
Alignment:
Q  279 catttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    ||||||||||||||| ||||||||||||||||  |||||||||||||||||| |||||    
T  1805098 catttacgtattttacttgtgtcaataggaagatttcattgtcaaaaaagcatttttc 1805155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 47317784 - 47317864
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||||||||||| |||||||||||| |||||||| |||||||| |   |||| |||| ||||| |||||||||||||    
T  47317784 cggtagttaactaccgctgggggcatttaagtattttacttgtgtcattgtaaagttttcaatgtcagaaaagcaattttc 47317864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 256 - 327
Target Start/End: Original strand, 5569327 - 5569398
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaa 327  Q
    |||||||||||||||| |  ||  |||||||||||||| ||||||||||||||| |||||||||| ||||||    
T  5569327 cggtagttaactaccgctaaggatatttacgtattttacttgtgtcaataggaactattcattgtaaaaaaa 5569398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 261 - 336
Target Start/End: Complemental strand, 40793030 - 40792955
Alignment:
Q  261 gttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    ||||||| ||| ||||||||||||||||||||| |||||||||| ||||   |||||||| ||||||| |||||||    
T  40793030 gttaactgccgctgggggcatttacgtattttacttgtgtcaatgggaaaatttcattgtaaaaaaaggaattttc 40792955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 17185160 - 17185206
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||    
T  17185160 tttacttgtgtcaataggaagtattcattgtcgaaaaagcaattttc 17185206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 257 - 336
Target Start/End: Complemental strand, 18792008 - 18791929
Alignment:
Q  257 ggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    ||||||||||||| ||||  || ||||| |||||||| ||||||   ||||||||||||| |||||||||| ||||||||    
T  18792008 ggtagttaactactgttgatggtatttaagtattttacttgtgtttttaggaagtattcaatgtcaaaaaaacaattttc 18791929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 256 - 310
Target Start/End: Complemental strand, 34192061 - 34192007
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaag 310  Q
    |||| ||||||| ||||||| ||||||||||||||||| |||||||||| |||||    
T  34192061 cggttgttaactgccgttggaggcatttacgtattttatttgtgtcaattggaag 34192007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 275 - 336
Target Start/End: Complemental strand, 6272509 - 6272448
Alignment:
Q  275 ggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||||  |||||||| ||||||||||| ||||| |||||||| | |||||||||||||    
T  6272509 ggggcattttagtattttatttgtgtcaatatgaagttttcattgttagaaaagcaattttc 6272448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 256 - 337
Target Start/End: Original strand, 41964785 - 41964866
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttcc 337  Q
    |||||||||||||||| ||||| | |||| ||| |||| || ||||||| |||| | |||| ||||| ||||||||||||||    
T  41964785 cggtagttaactaccgctggggacgtttaagtaatttacttatgtcaattggaacttttcaatgtcagaaaagcaattttcc 41964866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 1299068 - 1299148
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||||||||||| ||| |||| |||  ||  ||| ||||||||||||||||| | |  |||||||||||||||||||    
T  1299068 cggtagttaactaccgctggaggcaattatatacattatttgtgtcaataggaagtttcctatgtcaaaaaagcaattttc 1299148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 10555072 - 10555152
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||| ||||||||| |||||| |||||||| ||||||||||  ||| |  ||| ||||| |||||||||||||    
T  10555072 cggttgttaactgccgttggggacatttaggtattttacttgtgtcaatgtgaacttatcaatgtcagaaaagcaattttc 10555152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 253 - 301
Target Start/End: Original strand, 40446520 - 40446568
Alignment:
Q  253 cagcggtagttaactaccgttgggggcatttacgtattttaattgtgtc 301  Q
    |||||||||||||| ||||||||||||||  |||||||||| |||||||    
T  40446520 cagcggtagttaacgaccgttgggggcataaacgtattttacttgtgtc 40446568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 336
Target Start/End: Complemental strand, 39881396 - 39881341
Alignment:
Q  281 tttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||||||||  ||||| |||||||||| |||||||||| |||| ||||||||    
T  39881396 tttacgtattttacatgtgttaataggaagttttcattgtcagaaaaacaattttc 39881341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 2206304 - 2206350
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| |||||||||||||||||||||  ||||| |||||||||||||    
T  2206304 tttacttgtgtcaataggaagtattctatgtcagaaaagcaattttc 2206350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 254 - 332
Target Start/End: Complemental strand, 10552778 - 10552700
Alignment:
Q  254 agcggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaat 332  Q
    |||||| ||||||||||| ||| | | |||  |||  ||| |||||||||||||||||||||  |||||||||||||||    
T  10552778 agcggttgttaactaccgctggagactttttagtaaattacttgtgtcaataggaagtattccatgtcaaaaaagcaat 10552700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 22292800 - 22292846
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| |||||||||||| || |||||||||||||||||| |||||||    
T  22292800 tttacttgtgtcaatagaaaatattcattgtcaaaaaagtaattttc 22292846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 336
Target Start/End: Original strand, 42736966 - 42737007
Alignment:
Q  295 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||||||||||||||||  |||||||||| ||||||||    
T  42736966 ttgtgtcaataggaagtattctatgtcaaaaaaacaattttc 42737007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 47943298 - 47943253
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaatttt 335  Q
    |||| |||||||||||| || ||||||||||||||||| |||||||    
T  47943298 tttacttgtgtcaatagaaaatattcattgtcaaaaaatcaatttt 47943253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 47948728 - 47948683
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaatttt 335  Q
    |||| |||||||||||| || ||||||||||||||||| |||||||    
T  47948728 tttacttgtgtcaatagaaaatattcattgtcaaaaaatcaatttt 47948683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1903 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: scaffold1903
Description:

Target: scaffold1903; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 15 - 336
Target Start/End: Complemental strand, 580 - 276
Alignment:
Q  15 ataaaaatgttcatgttaatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgattttatgggtaggcc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||     
T  580 ataaaaatgttcatgttaatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaagattaaacaattgatttcatgggtaggca 481  T
Q  115 tatttgtttcaagaggagatcagaggaagaaacacaaaggatttgagaaggaattgagttgaatgcttctgaaaattttgtttgtattgctgtgacctat 214  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |    
T  480 tatttgtttcaagaggagattagaggaagaaacacaaaggaattgagaaggaattgaattgaatgcttctgaaaattttgtttgtattgttgtgacctgt 381  T
Q  215 gatggaagcactttgtagtcatttgactaataaatattcagcggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtatt 314  Q
    |||||||||||||||||||||||||||||| || ||||||||                 || ||||||||||||||||| ||||||||||| ||||||||    
T  380 gatggaagcactttgtagtcatttgactaacaagtattcagc-----------------ggaggcatttacgtattttacttgtgtcaataagaagtatt 298  T
Q  315 cattgtcaaaaaagcaattttc 336  Q
    ||||||||||||| | ||||||    
T  297 cattgtcaaaaaaacgattttc 276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1903; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 1162 - 1199
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtatttta 293  Q
    |||||||||||||||| | |||||||||||||||||||    
T  1162 cggtagttaactaccgctaggggcatttacgtatttta 1199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 179; Significance: 4e-96; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 15 - 275
Target Start/End: Complemental strand, 9981475 - 9981226
Alignment:
Q  15 ataaaaatgttcatgttaatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgattttatgggtaggcc 114  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9981475 ataaaaatgttcatgttaatctcataaaataagaacaggatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgatttcatgggtaggcc 9981376  T
Q  115 tatttgtttcaagaggagatcagaggaagaaacacaaaggatttgagaaggaattgagttgaatgcttctgaaaattttgtttgtattgctgtgacctat 214  Q
    |||||||||||||||||||| ||||||||||||||||           ||||||||| ||||||||||||||||||||||||||||||| |||||||| |    
T  9981375 tatttgtttcaagaggagattagaggaagaaacacaa-----------aggaattgaattgaatgcttctgaaaattttgtttgtattgttgtgacctgt 9981287  T
Q  215 gatggaagcactttgtagtcatttgactaataaatattcagcggtagttaactaccgttgg 275  Q
    |||||||||||||||||||||||||||||| || |||||| |||||||||||||| |||||    
T  9981286 gatggaagcactttgtagtcatttgactaacaagtattcatcggtagttaactactgttgg 9981226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 7 - 267
Target Start/End: Original strand, 20855497 - 20855740
Alignment:
Q  7 aaaaccagataaaaatgttcatgttaatctcataaaacaagaacaagatgaa-gttgttgatggtgatggtgaagaagaaggttaaacaattgattttat 105  Q
    |||| |||||||||||  |||||||||||||||||||||| || ||||| || |||||||||      ||||||||||| ||||||||||||||||| ||    
T  20855497 aaaatcagataaaaataatcatgttaatctcataaaacaaaaataagattaaagttgttgat------ggtgaagaagatggttaaacaattgatttcat 20855590  T
Q  106 gggtaggcctatttgtttcaagaggagatcagaggaagaaacacaaaggatttgagaaggaattgagttgaatgcttctgaaaattttgtttgtattgc- 204  Q
    | |||||||| ||||||||| |||||||| ||||||||||||||             ||||||||| |||| || ||||||||||||||||||||| ||     
T  20855591 gtgtaggcctttttgtttcacgaggagattagaggaagaaacac-------------aggaattgaattgattgtttctgaaaattttgtttgtatggct 20855677  T
Q  205 -tgtgacctatgatggaagcactttgtagtcatttgactaataaatattcagcggtagttaact 267  Q
     |||||||| ||||| ||||||  ||||||||||||| ||| || |||||| ||||||||||||    
T  20855678 gtgtgacctgtgatgaaagcac-ctgtagtcatttgattaacaagtattcaacggtagttaact 20855740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 7 - 148
Target Start/End: Original strand, 46355899 - 46356035
Alignment:
Q  7 aaaaccagataaaaatgttcatgttaatctcataaaacaagaacaagatgaa-gttgttgatggtgatggtgaagaagaaggttaaacaattgattttat 105  Q
    |||| |||||||||||  ||||||||||||| ||||||||||| ||||| || |||||||||      ||||||||||| ||||||||||||||||||||    
T  46355899 aaaatcagataaaaataatcatgttaatctcgtaaaacaagaataagattaaagttgttgat------ggtgaagaagatggttaaacaattgattttat 46355992  T
Q  106 gggtaggcctatttgtttcaagaggagatcagaggaagaaaca 148  Q
    |||||||||| ||||||||| |||||||| |||||||||||||    
T  46355993 gggtaggcctttttgtttcacgaggagattagaggaagaaaca 46356035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 9981187 - 9981107
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    ||||| |||||||||| ||  ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  9981187 cggtaattaactaccgctgaaggcatttacgtattttacttgtgtcaataggaagtattccttgtcaaaaaagcaattttc 9981107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 10466586 - 10466540
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  10466586 tttacttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 10466540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 252 - 333
Target Start/End: Original strand, 15502806 - 15502887
Alignment:
Q  252 tcagcggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaatt 333  Q
    |||||||||||||||||||| | |||| ||||  |||||||| |||||| | ||||||||||| | ||||||||||||||||    
T  15502806 tcagcggtagttaactaccgcttggggtattttagtattttacttgtgttactaggaagtattgaatgtcaaaaaagcaatt 15502887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 259 - 336
Target Start/End: Original strand, 22438580 - 22438657
Alignment:
Q  259 tagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    ||||||||||||| |||||| ||||| |||||||| |||||||||||||||   | | ||||||||||||||||||||    
T  22438580 tagttaactaccgctgggggtatttatgtattttacttgtgtcaataggaacattcctttgtcaaaaaagcaattttc 22438657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 298 - 336
Target Start/End: Complemental strand, 2332795 - 2332757
Alignment:
Q  298 tgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2332795 tgtcaataggaagtattcattgtcaaaaaagcaattttc 2332757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 2567302 - 2567256
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||    
T  2567302 tttatttgtgtcaataggaagtattcattgtcaaaaaaacaattttc 2567256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 287 - 336
Target Start/End: Original strand, 205263 - 205312
Alignment:
Q  287 tattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    ||||||| ||||||||||||||| |||||||||| |||||||||||||||    
T  205263 tattttatttgtgtcaataggaaatattcattgtgaaaaaagcaattttc 205312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 256 - 337
Target Start/End: Original strand, 12028355 - 12028436
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttcc 337  Q
    |||||| ||||||||| ||||| | |||  |||  ||| |||||||||||||||||||||  ||||||||||||||||||||    
T  12028355 cggtaggtaactaccgctggggactttttagtaaattatttgtgtcaataggaagtattccatgtcaaaaaagcaattttcc 12028436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 256 - 337
Target Start/End: Original strand, 40729907 - 40729988
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttcc 337  Q
    |||||||||| ||||| ||| |||||||| |||||||| |||||||| |  ||||| |||| ||||| ||||||||||||||    
T  40729907 cggtagttaaataccgctggtggcatttaagtattttacttgtgtcattgtgaagttttcaatgtcagaaaagcaattttcc 40729988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 260 - 336
Target Start/End: Complemental strand, 36390832 - 36390756
Alignment:
Q  260 agttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||| |||||||||| |   ||||  |||| |||||||||||||||||||| |||||||| ||||||||||||    
T  36390832 agttaactgccgttgggggtaaaaacgtcatttacttgtgtcaataggaagtatttattgtcaagaaagcaattttc 36390756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 296 - 336
Target Start/End: Complemental strand, 36774683 - 36774643
Alignment:
Q  296 tgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  36774683 tgtgtcaataggaagtattcattgtcaaaaaaacaattttc 36774643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 43036471 - 43036551
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||||||||||| | |||||||||| |||||||| |||||||| |  ||||| ||   |||||||||||||||||||    
T  43036471 cggtagttaactaccgctaggggcatttaagtattttacttgtgtcattgtgaagttttttatgtcaaaaaagcaattttc 43036551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 40729281 - 40729235
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||||||||||| ||||||||||||||||| ||||||||    
T  40729281 tttacttgtgtcaataggaaatattcattgtcaaaaaatcaattttc 40729235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 48093284 - 48093238
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||||||||||||||||||||||||||||| || |||||    
T  48093284 tttacttgtgtcaataggaagtattcattgtcaaaaaaacatttttc 48093238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 49792978 - 49793024
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||||||||||||||||||| ||||||||| ||||||||    
T  49792978 tttacttgtgtcaataggaagtattcatcgtcaaaaaaacaattttc 49793024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 52073553 - 52073507
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||||||||||| ||||||||||||||||| ||||||||    
T  52073553 tttacttgtgtcaataggaaatattcattgtcaaaaaaacaattttc 52073507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 295 - 336
Target Start/End: Original strand, 46518353 - 46518394
Alignment:
Q  295 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  46518353 ttgtgtcaataggaagtattccatgtcaaaaaagcaattttc 46518394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 295 - 336
Target Start/End: Complemental strand, 51026030 - 51025989
Alignment:
Q  295 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  51026030 ttgtgtcaataggaagtattctatgtcaaaaaagcaattttc 51025989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 2333824 - 2333904
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| |||||| ||||||||||||||||| |||||||| |||||||| |  ||||| ||   ||||| |||||||||||||    
T  2333824 cggttgttaacaaccgttgggggcatttaagtattttacttgtgtcattgtgaagttttttatgtcagaaaagcaattttc 2333904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 32715349 - 32715269
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||||||||||| ||| ||| |||  |||  ||| ||||||||||||||||| | |  |||||||||||||||||||    
T  32715349 cggtagttaactaccgctggaggctttttagtaaattatttgtgtcaataggaagtttcctatgtcaaaaaagcaattttc 32715269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 39390900 - 39390980
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||||||| | |||| ||||| |||||||| |||||| |||||||| | | | || |||||||||||||||||    
T  39390900 cggttgttaactaccgctaggggtatttaagtattttatttgtgttaataggaactttcctttatcaaaaaagcaattttc 39390980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 333
Target Start/End: Complemental strand, 9617255 - 9617212
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaatt 333  Q
    |||| |||||||||||||||||||||  ||||||||||||||||    
T  9617255 tttacttgtgtcaataggaagtattcgatgtcaaaaaagcaatt 9617212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 273 - 336
Target Start/End: Complemental strand, 12024564 - 12024501
Alignment:
Q  273 tgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||| ||  ||| |||| ||||||||||||||||| |||||||||| |||| ||||||||    
T  12024564 tgggggcaattgggtaatttacttgtgtcaataggaagttttcattgtcagaaaatcaattttc 12024501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 335
Target Start/End: Complemental strand, 17915213 - 17915134
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaatttt 335  Q
    |||||||||||||||| ||||||| |||   ||  ||| ||||||||||| |||||||||  |||| |||||||||||||    
T  17915213 cggtagttaactaccgctgggggctttttaataaattacttgtgtcaataagaagtattccatgtccaaaaagcaatttt 17915134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 335
Target Start/End: Complemental strand, 22436113 - 22436038
Alignment:
Q  260 agttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaatttt 335  Q
    |||||||| ||| ||| |||||||| |||||||| ||||||| || |||| | |||| ||||| ||||||||||||    
T  22436113 agttaactgccgctggaggcatttaagtattttacttgtgtcgattggaacttttcaatgtcagaaaagcaatttt 22436038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 253 - 336
Target Start/End: Complemental strand, 35430580 - 35430497
Alignment:
Q  253 cagcggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    ||||||||||||||||||| || ||||||  | |||||||| |||||||  || ||| | |||  |||||||||||||||||||    
T  35430580 cagcggtagttaactaccgctgagggcataaatgtattttacttgtgtctttatgaaattttctatgtcaaaaaagcaattttc 35430497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 257 - 336
Target Start/End: Complemental strand, 43035846 - 43035767
Alignment:
Q  257 ggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||||||||||  |||| |||||| |||||||| ||||||||||  ||| |  ||| ||||| |||||||||||||    
T  43035846 ggtagttaactaccgccggggacatttaggtattttacttgtgtcaatgtgaacttatcaatgtcagaaaagcaattttc 43035767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 43890409 - 43890468
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttcccagagaaaaacc 349  Q
    |||| ||| |||||||||||||||||  |||| ||||||||||||||  |||||||||||    
T  43890409 tttacttgagtcaataggaagtattctatgtccaaaaagcaattttcatagagaaaaacc 43890468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 538 - 581
Target Start/End: Complemental strand, 52005204 - 52005161
Alignment:
Q  538 attgcatcttgcctattctatgagtgatgttggaatccaaggga 581  Q
    ||||| |||||||||||||||||||| |||||||||||| ||||    
T  52005204 attgcgtcttgcctattctatgagtggtgttggaatccacggga 52005161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 9618430 - 9618476
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||| |||||||||||||| ||||||||||||| |||||    
T  9618430 tttacttgtgtcgataggaagtattcaatgtcaaaaaagcatttttc 9618476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 21168463 - 21168417
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| |||||||||||||||||||||  ||||| |||||||||||||    
T  21168463 tttacttgtgtcaataggaagtattctatgtcagaaaagcaattttc 21168417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 26592858 - 26592904
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| |||||| |||||||| |||||||| |||||||||||||||||    
T  26592858 tttacttgtgttaataggaaatattcattatcaaaaaagcaattttc 26592904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 35142886 - 35142840
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| |||||||||||||||| ||||| |||||||| ||||||||||    
T  35142886 tttacttgtgtcaataggaagcattcaatgtcaaaatagcaattttc 35142840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 36505805 - 36505759
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtca 302  Q
    |||||||||||||||| |||||| ||||| |||||||| ||||||||    
T  36505805 cggtagttaactaccgctgggggtatttaagtattttatttgtgtca 36505759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 45936652 - 45936606
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| |||||||||||||||||||||  ||||| |||||||||||||    
T  45936652 tttacttgtgtcaataggaagtattctatgtcagaaaagcaattttc 45936606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 49790663 - 49790617
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| |||||||||||||||||||||  ||||| |||||||||||||    
T  49790663 tttacttgtgtcaataggaagtattctatgtcagaaaagcaattttc 49790617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 51029611 - 51029657
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| |||||||||||||||||||||  ||||| |||||||||||||    
T  51029611 tttacttgtgtcaataggaagtattctatgtcagaaaagcaattttc 51029657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 20902524 - 20902565
Alignment:
Q  298 tgtcaataggaagtattcattgtcaaaaaagcaattttccca 339  Q
    ||||||||||||||||||  ||||| ||||||||||||||||    
T  20902524 tgtcaataggaagtattctatgtcagaaaagcaattttccca 20902565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 1e-46; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 7 - 151
Target Start/End: Original strand, 33130295 - 33130445
Alignment:
Q  7 aaaaccagataaaaatgttcatgttaatctcataaaacaagaac------aagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgat 100  Q
    ||||||||| || ||||||||| |||||||||| ||||||||||      ||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  33130295 aaaaccagacaacaatgttcatcttaatctcatcaaacaagaacaggaacaagatgaagttgttgatggtgttggtgaagaagaaggtgaaacaattgat 33130394  T
Q  101 tttatgggtaggcctatttgtttcaagaggagatcagaggaagaaacacaa 151  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  33130395 tttatgggtagacctatttgtttcaagaggagattagaggaagaaacacaa 33130445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 7 - 272
Target Start/End: Complemental strand, 54670939 - 54670699
Alignment:
Q  7 aaaaccagataaaaatgttcatgttaatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgattttatg 106  Q
    ||||||||||||||||  ||||||||||||||||||||||||| ||| | ||   |||||| ||||         |||| |||||||||||||||| |||    
T  54670939 aaaaccagataaaaatagtcatgttaatctcataaaacaagaataagtttaaa--gttgattgtga---------agaaagttaaacaattgatttcatg 54670851  T
Q  107 ggtaggcctatttgtttcaagaggagatcagaggaagaaacacaaaggatttgagaaggaattgagttgaatgcttctgaaaattttgtttgtattgctg 206  Q
    |||||| || ||||||||| |||||||| ||||||||||||||||           ||||||||| |||| || |||||||||||||||||||||   ||    
T  54670850 ggtagggctttttgtttcacgaggagattagaggaagaaacacaa-----------aggaattgaattgattgtttctgaaaattttgtttgtat--atg 54670764  T
Q  207 tgacctatgatggaagcactttgtagtcatttgactaataaatattcagcggtagttaactaccgt 272  Q
    |||||| ||||| |||||| |||||||||||||| ||| || ||||||||| ||||||| ||||||    
T  54670763 tgacctgtgatgaaagcac-ttgtagtcatttgattaacaagtattcagcgatagttaattaccgt 54670699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 449 - 605
Target Start/End: Original strand, 34732003 - 34732160
Alignment:
Q  449 aggattttcaaaaaccaattcaagtgtattgatgagttggtggatgaggttaagactttgtcttggtgttgggc-ttaaataggtctcgaattgcatctt 547  Q
    |||||||| || || |||||||||  |||||  || |||||||||||||||||| | ||||||||||||||||| |||||||||   || ||| ||||||    
T  34732003 aggatttttaagaatcaattcaagcatattgccgaattggtggatgaggttaaggccttgtcttggtgttgggcgttaaataggctccgtatttcatctt 34732102  T
Q  548 gcctattctatgagtgatgttggaatccaagggattgcttccttaggaggcgttgatt 605  Q
    |||||| ||| ||||| |||||||| |||||||| ||||| |||||||||||||||||    
T  34732103 gcctatactacgagtggtgttggaaaccaagggagtgcttacttaggaggcgttgatt 34732160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 261 - 336
Target Start/End: Complemental strand, 52560357 - 52560282
Alignment:
Q  261 gttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    ||||||| ||| ||| ||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||    
T  52560357 gttaactgccgctggaggcatttacgtattttacttgtgtcaataggaaggtttcattgtcaaaaaagcaattttc 52560282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 38108852 - 38108772
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||||||||||| ||| || ||||| |||||||| ||||||||||||||| | || |||||||||||||||||||||    
T  38108852 cggtagttaactaccgctggaggtatttaagtattttacttgtgtcaataggaactttttattgtcaaaaaagcaattttc 38108772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 55146642 - 55146562
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    ||||||||||||| ||||||||| ||||| |||||||||||||||||||||||| | | | || |||||||||||||||||    
T  55146642 cggtagttaactatcgttgggggtatttatgtattttaattgtgtcaataggaactttcctttttcaaaaaagcaattttc 55146562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 277 - 336
Target Start/End: Complemental strand, 45031572 - 45031513
Alignment:
Q  277 ggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    ||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||    
T  45031572 ggcatttacgtattttatttgtgtcaataggaagatttcattgtcaaaaaagcaattttc 45031513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 30715954 - 30715874
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattca-ttgtcaaaaaagcaattttc 336  Q
    |||||||||||||||| |||||| ||||| |||||||| ||||||||||||||| | |||| ||||||||||||||||||||    
T  30715954 cggtagttaactaccgctgggggtatttatgtattttacttgtgtcaataggaact-ttcatttgtcaaaaaagcaattttc 30715874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 256 - 331
Target Start/End: Original strand, 18946544 - 18946619
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaa 331  Q
    |||| ||||| ||| | ||||||||||||||||||||| ||||||||||||||||  ||||| |||||||||||||    
T  18946544 cggttgttaattactgctgggggcatttacgtattttacttgtgtcaataggaaggtttcatcgtcaaaaaagcaa 18946619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 256 - 327
Target Start/End: Original strand, 48165255 - 48165326
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaa 327  Q
    |||| ||||||| ||||||| ||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  48165255 cggttgttaactgccgttggaggcatttacgtattttacttatgtcaataggaagatttcattgtcaaaaaa 48165326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 10036872 - 10036826
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  10036872 tttacttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 10036826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 45035108 - 45035188
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||| | ||| ||||| ||||||||||||||| ||||||||||||||||| |||||||| | ||||| |||||||    
T  45035108 cggttgttaattgccgctggggacatttacgtattttacttgtgtcaataggaagttttcattgttagaaaagtaattttc 45035188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 269 - 336
Target Start/End: Complemental strand, 18942667 - 18942600
Alignment:
Q  269 ccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    ||||| ||||||||| ||||||||| ||||||||||||||| | |||||||||| |||| ||||||||    
T  18942667 ccgttaggggcatttgcgtattttacttgtgtcaataggaaattttcattgtcagaaaaacaattttc 18942600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 34470287 - 34470241
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||    
T  34470287 tttacttgtgtcaataggaagtattcattgtcaaaaaagaaattttc 34470241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 295 - 336
Target Start/End: Original strand, 40469257 - 40469298
Alignment:
Q  295 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  40469257 ttgtgtcaataggaagtattcaatgtcaaaaaagcaattttc 40469298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 299 - 336
Target Start/End: Original strand, 51017283 - 51017320
Alignment:
Q  299 gtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    ||||||||||||||||||||||||||||||||||||||    
T  51017283 gtcaataggaagtattcattgtcaaaaaagcaattttc 51017320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 13931 - 14011
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||| ||| ||| |||||| || ||||||| |||||||||||||||   |||||||| |||||||||||||||    
T  13931 cggttgttaactgccgctggaggcattaacatattttacttgtgtcaataggaaagtttcattgttaaaaaagcaattttc 14011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 44006475 - 44006395
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||||||||||| |||||||||||| |||||||| || ||||| |  ||| | |||| ||||| |||||||||||||    
T  44006475 cggtagttaactaccgctgggggcatttaagtattttacttatgtcattgtgaaattttcaatgtcagaaaagcaattttc 44006395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 44847036 - 44846956
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||||||||||| ||| || ||||| |||||||| |||||| |||  ||||| |||| ||||| |||||||||||||    
T  44847036 cggtagttaactaccgctggaggtatttaagtattttacttgtgttaatgtgaagttttcaatgtcagaaaagcaattttc 44846956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 260 - 336
Target Start/End: Original strand, 51014279 - 51014355
Alignment:
Q  260 agttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||| | ||| |||||||||||| |||||||| |||||||||| |||| | |||| ||||| |||||||||||||    
T  51014279 agttaattgccgctgggggcatttaggtattttacttgtgtcaattggaacttttcaatgtcagaaaagcaattttc 51014355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 255
Target Start/End: Original strand, 33130573 - 33130659
Alignment:
Q  162 aaggaattgagttgaatgcttctgaaaattttgtttgtattgctgtgacctatgatggaagcactttgtagtcatttgactaataaatattcag 255  Q
    |||||||||| || | ||||||||| |||||||||||||  |||||||       ||||||||||| ||||||||||||||||||| |||||||    
T  33130573 aaggaattgaattaattgcttctgagaattttgtttgtagggctgtga-------tggaagcacttggtagtcatttgactaataagtattcag 33130659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 11377228 - 11377182
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| |||||||||||| |||||||||||||| ||||||||||||||    
T  11377228 tttacttgtgtcaatagaaagtattcattgtcgaaaaagcaattttc 11377182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 254 - 336
Target Start/End: Original strand, 18912257 - 18912339
Alignment:
Q  254 agcggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||||||||  ||| ||| |||||||  |||||||| ||||||||||| ||| | |||| ||||| |||||||||||||    
T  18912257 agcggtagttaacggccgctggaggcattttagtattttacttgtgtcaatatgaaattttcactgtcagaaaagcaattttc 18912339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 30194522 - 30194568
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||||||||||||||||||| ||||||||| ||||||||    
T  30194522 tttacttgtgtcaataggaagtattcatggtcaaaaaaacaattttc 30194568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 298 - 336
Target Start/End: Original strand, 37268112 - 37268150
Alignment:
Q  298 tgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  37268112 tgtcaataggaagtattcattgtcaaaaatgcaattttc 37268150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 37718092 - 37718138
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||||||||||||||||| ||||| ||||||||||||||    
T  37718092 tttacttgtgtcaataggaagtattcgttgtcgaaaaagcaattttc 37718138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 42321765 - 42321719
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| |||||||||||||||||||||||||||||||||  |||||||    
T  42321765 tttacttgtgtcaataggaagtattcattgtcaaaaaaataattttc 42321719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 45266536 - 45266582
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||||||||||| |||||| |||||||||||||||||||    
T  45266536 tttacttgtgtcaataggaaatattcaatgtcaaaaaagcaattttc 45266582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 54922555 - 54922628
Alignment:
Q  260 agttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattt 334  Q
    |||||||||||| |||||  ||||| ||  |||| ||||||||||||||||||| || |||||||||||||||||    
T  54922555 agttaactaccgctggggtaattta-gtcatttatttgtgtcaataggaagtatacaatgtcaaaaaagcaattt 54922628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 21196603 - 21196648
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaatttt 335  Q
    |||| |||||||||||||||||||||  ||||||||||||||||||    
T  21196603 tttacttgtgtcaataggaagtattctatgtcaaaaaagcaatttt 21196648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 295 - 335
Target Start/End: Complemental strand, 50457470 - 50457430
Alignment:
Q  295 ttgtgtcaataggaagtattcattgtcaaaaaagcaatttt 335  Q
    |||||||||||||||||||||  ||||||||||||||||||    
T  50457470 ttgtgtcaataggaagtattctatgtcaaaaaagcaatttt 50457430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 261 - 309
Target Start/End: Complemental strand, 51011625 - 51011577
Alignment:
Q  261 gttaactaccgttgggggcatttacgtattttaattgtgtcaataggaa 309  Q
    ||||||||||||| |||| ||||| |||||||| |||||||||||||||    
T  51011625 gttaactaccgtttggggtatttatgtattttacttgtgtcaataggaa 51011577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 55151327 - 55151407
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||| ||| |||| ||||||| ||||||||  ||||||||| |||| | |||| ||||| |||||||||||||    
T  55151327 cggttgttaactgccgctgggagcatttaggtattttacctgtgtcaattggaacttttcaatgtcagaaaagcaattttc 55151407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 261 - 336
Target Start/End: Original strand, 33942733 - 33942808
Alignment:
Q  261 gttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    ||||||| |||||||||||| ||| |||  ||| ||||||||||||||||| | |  ||||| |||||||||||||    
T  33942733 gttaactgccgttgggggcaattatgtaaattacttgtgtcaataggaagtttcctatgtcacaaaagcaattttc 33942808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 333
Target Start/End: Complemental strand, 54921448 - 54921405
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaatt 333  Q
    |||| |||||||||||| ||||||||| ||||||||||||||||    
T  54921448 tttacttgtgtcaatagaaagtattcactgtcaaaaaagcaatt 54921405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 254 - 336
Target Start/End: Original strand, 2286024 - 2286106
Alignment:
Q  254 agcggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    ||||||||||||| ||||||||||||||  || |||||||  ||||||  || ||| | |||  |||||||||||||||||||    
T  2286024 agcggtagttaacgaccgttgggggcataaacatattttacctgtgtctttatgaacttttctatgtcaaaaaagcaattttc 2286106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 30191711 - 30191665
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| |||||||||||||||||||||  ||||| |||||||||||||    
T  30191711 tttacttgtgtcaataggaagtattctatgtcagaaaagcaattttc 30191665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 250 - 336
Target Start/End: Original strand, 44810654 - 44810740
Alignment:
Q  250 attcagcggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||||||||||||||||| ||| || ||||| |||||||| || ||||| |   |||| ||||  |||| |||||||||||||    
T  44810654 attcagcggtagttaactaccgctggaggtatttaagtattttacttttgtcattgtaaagttttcaacgtcagaaaagcaattttc 44810740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 46412516 - 46412470
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| |||||||||||||||||||||  ||||| |||||||||||||    
T  46412516 tttacttgtgtcaataggaagtattctatgtcagaaaagcaattttc 46412470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 48098159 - 48098205
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| |||||||||||||||||||||  ||||| |||||||||||||    
T  48098159 tttacttgtgtcaataggaagtattctatgtcagaaaagcaattttc 48098205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 44926819 - 44926782
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaa 327  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  44926819 tttacttgtgtcaataggaagtattcattgtcataaaa 44926782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 327
Target Start/End: Original strand, 46415232 - 46415269
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaa 327  Q
    |||| |||||||||||||||||||||||||| ||||||    
T  46415232 tttacttgtgtcaataggaagtattcattgtaaaaaaa 46415269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 1e-43; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 15480461 - 15480331
Alignment:
Q  21 atgttcatgttaatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgattttatgggtaggcctatttg 120  Q
    ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||  ||||||| ||||||||    
T  15480461 atgttaatgttaatatcttaaaacaagaacaagatgaagttgttgatggtgatggtgaagaggaaggtgaaacaattgatttcttgggtagacctatttg 15480362  T
Q  121 tttcaagaggagatcagaggaagaaacacaa 151  Q
    ||||||||||||||  |||||||||||||||    
T  15480361 tttcaagaggagattggaggaagaaacacaa 15480331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 19507878 - 19507798
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19507878 cggtagtttactaccactgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 19507798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 44070823 - 44070750
Alignment:
Q  260 agttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaatt 333  Q
    |||||||||||| ||| ||||||||||||||||| |||||||||||||||   |||||||||||||||||||||    
T  44070823 agttaactaccgctggaggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatt 44070750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 22712187 - 22712267
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||||||||||| | |||||||| || |  |||| ||||||||||||||| ||||||||||||||||||||||||||    
T  22712187 cggtagttaactaccgctaggggcattaacatcatttacttgtgtcaataggaattattcattgtcaaaaaagcaattttc 22712267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 10602229 - 10602278
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttccca 339  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  10602229 tttacttgtgtcaataggaagtattcaatgtcaaaaaagcaattttccca 10602278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 6978812 - 6978858
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||    
T  6978812 tttacttgtgtcaataggaaatattcattgtcaaaaaagcaattttc 6978858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 23719354 - 23719308
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||    
T  23719354 tttacttgtgtcaataggaagtattcattgtcaaaaaaggaattttc 23719308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 24107026 - 24106980
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||    
T  24107026 tttacttgtgtcaataggaagtattcattgtcaaaaaaggaattttc 24106980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 251 - 336
Target Start/End: Original strand, 2121284 - 2121369
Alignment:
Q  251 ttcagcggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| |||||||||||||||||||| | | |||  |||  ||| |||||||||||||||||||||  |||||||||| ||||||||    
T  2121284 ttcaacggtagttaactaccgttggagactttttagtaaattacttgtgtcaataggaagtattccatgtcaaaaaaacaattttc 2121369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 251 - 336
Target Start/End: Complemental strand, 13329829 - 13329744
Alignment:
Q  251 ttcagcggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||||||||| || | | |||||| || |  |||| |||||| |||||||||||||||||||||||||| ||||||||    
T  13329829 ttcaacggtagttaactatcgctagaggcattaacatcatttacttgtgttaataggaagtattcattgtcaaaaaaacaattttc 13329744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 31500860 - 31500780
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||| ||| ||  |||||||  |||||||| ||||||||||| ||||| |||||||||| |||||||||||||    
T  31500860 cggttgttaactgccgctgaaggcattttagtattttacttgtgtcaatatgaagttttcattgtcagaaaagcaattttc 31500780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 15630464 - 15630510
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| |||||||||||||||||||||| |||||||||||||| ||||    
T  15630464 tttatttgtgtcaataggaagtattcaatgtcaaaaaagcaactttc 15630510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 40614741 - 40614822
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcat-tgtcaaaaaagcaattttc 336  Q
    |||||||||||||| | |||||||||||| |||||||| |||||||  || ||||| ||  | |||||||||||||||||||    
T  40614741 cggtagttaactactgctgggggcatttaagtattttacttgtgtctttatgaagtttttttatgtcaaaaaagcaattttc 40614822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 260 - 336
Target Start/End: Complemental strand, 1481132 - 1481056
Alignment:
Q  260 agttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    ||||||||| ||||||||| ||||| |||||||| |||||||  || ||||| ||   |||||||||||||||||||    
T  1481132 agttaactatcgttgggggaatttaagtattttatttgtgtctttacgaagttttttatgtcaaaaaagcaattttc 1481056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 2119525 - 2119445
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||| ||| |||| ||||||   ||||||| ||||||||||| ||||| |||||||||| |||| ||||||||    
T  2119525 cggttgttaactgccgctgggagcatttcaatattttacttgtgtcaatatgaagttttcattgtcagaaaatcaattttc 2119445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 4425958 - 4425878
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||||| ||| |||||||||||||| |||||||| |||||| | |  ||||| |||| ||||| |||||||| ||||    
T  4425958 cggtagttaagtactgttgggggcatttaagtattttacttgtgttattgtgaagttttcaatgtcagaaaagcaactttc 4425878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 28654700 - 28654780
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||| ||| |||||||||||  |||||||| |||||||||||| |||  |||||||| | |||| ||||||||    
T  28654700 cggttgttaactgccgctgggggcatttcagtattttacttgtgtcaatagaaaggtttcattgttagaaaaacaattttc 28654780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 335
Target Start/End: Complemental strand, 17112384 - 17112305
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaatttt 335  Q
    |||| ||||||| ||| ||||||| |||  |||  ||| ||||||||||||||||||||   ||||||||||||||||||    
T  17112384 cggttgttaactgccgctgggggctttttggtaaattacttgtgtcaataggaagtattttatgtcaaaaaagcaatttt 17112305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 335
Target Start/End: Complemental strand, 34519981 - 34519902
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaatttt 335  Q
    |||| ||||| | ||||||||||| |||  |||  ||| ||||||||||||||||||||   ||||||||||||||||||    
T  34519981 cggttgttaattgccgttgggggctttttggtaaattacttgtgtcaataggaagtattttatgtcaaaaaagcaatttt 34519902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 5422310 - 5422356
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| |||||||||||| ||||||||  |||||||||||||||||||    
T  5422310 tttacttgtgtcaatagaaagtattcgctgtcaaaaaagcaattttc 5422356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 31297686 - 31297640
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| |||||||||||||||||||||  ||||| |||||||||||||    
T  31297686 tttacttgtgtcaataggaagtattctatgtcagaaaagcaattttc 31297640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 259 - 336
Target Start/End: Original strand, 31435032 - 31435109
Alignment:
Q  259 tagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    ||||||||||| | |||||||||  |||||||||| |||||||  || ||| | |||  |||||||||||||||||||    
T  31435032 tagttaactactgctgggggcataaacgtattttacttgtgtctttatgaaattttctatgtcaaaaaagcaattttc 31435109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 1e-34; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 7 - 271
Target Start/End: Original strand, 14735301 - 14735550
Alignment:
Q  7 aaaaccagataaaaatgttcatgttaatctcataaaacaagaacaagatgaa-gttgttgatggtgatggtgaagaagaaggttaaacaattgattttat 105  Q
    |||| ||||||||||| ||||||||||||||||||||| |||| ||||| || |||||||||| |||      |||||| ||||||||||||||||| ||    
T  14735301 aaaatcagataaaaatattcatgttaatctcataaaaccagaataagattaaagttgttgatgatga------agaagatggttaaacaattgatttcat 14735394  T
Q  106 gggtaggcctatttgtttcaagaggagatcagaggaagaaacacaaaggatttgagaaggaattgagttgaatgcttctgaaaattttgtttgtattgc- 204  Q
    |||||||||| ||||||||| |||||||| ||||||||||||||||||||           ||||| || | || ||||||||||||||||||||| ||     
T  14735395 gggtaggcctttttgtttcacgaggagattagaggaagaaacacaaagga-----------attgaatttattgtttctgaaaattttgtttgtatggcg 14735483  T
Q  205 -tgtgacctatgatggaagcactttgtagtcatttgactaataaatattcagcggtagttaactaccg 271  Q
     |||||| | ||||  |||||| |||||||||||||| ||| || |||||| ||| |||| |||||||    
T  14735484 gtgtgacatgtgatataagcac-ttgtagtcatttgattaacaagtattcaacggcagttgactaccg 14735550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 16583270 - 16583190
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||||||||||| ||||||| |||  |||  ||| |||||||||||||||||||||  |||||||||||||||||||    
T  16583270 cggtagttaactaccgctgggggctttttagtaaattacttgtgtcaataggaagtattccatgtcaaaaaagcaattttc 16583190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 253 - 336
Target Start/End: Complemental strand, 6253385 - 6253302
Alignment:
Q  253 cagcggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    ||||||||||||||||||||||||||||||||  ||||||| |||||||| |  ||||| |||  ||| | |||||||||||||    
T  6253385 cagcggtagttaactaccgttgggggcatttaattattttacttgtgtcattgtgaagttttctatgttagaaaagcaattttc 6253302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 277 - 336
Target Start/End: Original strand, 41270323 - 41270382
Alignment:
Q  277 ggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    ||||||||||||||||| ||||||||||| ||| | |||| |||||||||||||||||||    
T  41270323 ggcatttacgtattttacttgtgtcaatatgaaattttcactgtcaaaaaagcaattttc 41270382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 42167196 - 42167150
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||    
T  42167196 tttacttgtgtcaataggaagtattcattgtcaaaaaaccaattttc 42167150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 280 - 336
Target Start/End: Original strand, 40494103 - 40494159
Alignment:
Q  280 atttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    ||||| |||||||| ||||||||||||||||| |||||||||| |||| ||||||||    
T  40494103 atttaagtattttacttgtgtcaataggaagttttcattgtcagaaaatcaattttc 40494159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 250 - 301
Target Start/End: Original strand, 20086221 - 20086272
Alignment:
Q  250 attcagcggtagttaactaccgttgggggcatttacgtattttaattgtgtc 301  Q
    |||||||||||||||||||||| ||| |||||||| |||||||| |||||||    
T  20086221 attcagcggtagttaactaccgctggaggcatttaagtattttatttgtgtc 20086272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 253 - 336
Target Start/End: Complemental strand, 42095494 - 42095411
Alignment:
Q  253 cagcggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    ||||||| |||||||||||   |||||||||  |||||||| |||||||||||| || | |||||||||| |||| ||||||||    
T  42095494 cagcggttgttaactaccggaaggggcattttagtattttacttgtgtcaatagaaaattttcattgtcataaaatcaattttc 42095411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 33074862 - 33074908
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||||||| ||| ||||||||||||||||||||||||||    
T  33074862 tttacttgtgtcaatatgaaatattcattgtcaaaaaagcaattttc 33074908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 260 - 333
Target Start/End: Original strand, 8037288 - 8037361
Alignment:
Q  260 agttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaatt 333  Q
    |||||||||||| ||||| |||||| |||||||| ||||||||||  ||||  |||||||| |||||| |||||    
T  8037288 agttaactaccgctggggacatttatgtattttacttgtgtcaatgtgaaggtttcattgtaaaaaaaacaatt 8037361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 19243194 - 19243231
Alignment:
Q  295 ttgtgtcaataggaagtattcattgtcaaaaaagcaat 332  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  19243194 ttgtgtcgataggaagtattcattgtcaaaaaagcaat 19243231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 19316378 - 19316415
Alignment:
Q  295 ttgtgtcaataggaagtattcattgtcaaaaaagcaat 332  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  19316378 ttgtgtcgataggaagtattcattgtcaaaaaagcaat 19316415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 298 - 335
Target Start/End: Original strand, 26488536 - 26488573
Alignment:
Q  298 tgtcaataggaagtattcattgtcaaaaaagcaatttt 335  Q
    |||||||| |||||||||||||||||||||||||||||    
T  26488536 tgtcaatatgaagtattcattgtcaaaaaagcaatttt 26488573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 2809247 - 2809293
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||||||| |||||||||| |||||||||| ||||||||    
T  2809247 tttacttgtgtcaataagaagtattcaatgtcaaaaaaacaattttc 2809293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 254 - 336
Target Start/End: Original strand, 6253582 - 6253664
Alignment:
Q  254 agcggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    ||||||||||||||||||  |||| |||||| |||||||| |||||||| |  ||||| |||  ||| | |||||||||||||    
T  6253582 agcggtagttaactaccgcgggggacatttaagtattttacttgtgtcattgtgaagttttctatgttagaaaagcaattttc 6253664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 8036296 - 8036250
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| |||||||||||||||||||||  ||||| |||||||||||||    
T  8036296 tttacttgtgtcaataggaagtattctatgtcagaaaagcaattttc 8036250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 40678292 - 40678338
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| |||||||||||||||||||||  |||||||||| ||||||||    
T  40678292 tttacttgtgtcaataggaagtattctatgtcaaaaaaacaattttc 40678338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 20495562 - 20495611
Alignment:
Q  286 gtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaatttt 335  Q
    |||||||| ||||||||||| ||||| |||  ||||||||||||||||||    
T  20495562 gtattttacttgtgtcaatacgaagttttctatgtcaaaaaagcaatttt 20495611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 5620755 - 5620835
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||| ||| |||||||||||||||| |||| ||||||||||||||||| |||||||||| |||| ||||||||    
T  5620755 cggttgttaactgccgctgggggcatttacgtagtttacttgtgtcaataggaagttttcattgtcagaaaaacaattttc 5620835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 257 - 336
Target Start/End: Complemental strand, 5613874 - 5613795
Alignment:
Q  257 ggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    ||||||||||||||| |||||| ||||| |||||||| ||| ||||||||||| | | | ||||||||||||||||||||    
T  5613874 ggtagttaactaccgctgggggtatttaagtattttacttgggtcaataggaactttcctttgtcaaaaaagcaattttc 5613795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 290 - 337
Target Start/End: Original strand, 9904654 - 9904701
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttcc 337  Q
    |||| |||||||||||| ||||||||| ||||||||||||||||||||    
T  9904654 tttacttgtgtcaatagaaagtattcaatgtcaaaaaagcaattttcc 9904701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 33523898 - 33523978
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||||||| ||||||||| || |||||||| ||||||||||  ||| |  ||| ||||| |||||||||||||    
T  33523898 cggttgttaactaccgctgggggcatataggtattttacttgtgtcaatgtgaacttatcaatgtcataaaagcaattttc 33523978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 27014639 - 27014719
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||||||||||| | ||| |||| ||||  ||||||||||| |||||||| ||||||||||||||||||||||||||    
T  27014639 cggtagttaactaccgctagggacattaacgtcatttaattgtgttaataggaaatattcattgtcaaaaaagcaattttc 27014719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 22965776 - 22965825
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttccca 339  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  22965776 tttacttgtgtcaataggaagtattcaatgtcaaaaaagcaattttccca 22965825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 8214319 - 8214365
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||    
T  8214319 tttacttgtgtcaataggaagtattcaatgtcaaaaaagcaattttc 8214365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 256 - 326
Target Start/End: Original strand, 9042440 - 9042510
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaa 326  Q
    |||||||||||||||| |||||| |||||  ||||||| |||||| |||||||||  ||||||||||||||    
T  9042440 cggtagttaactaccgctgggggtatttaaatattttacttgtgttaataggaaggtttcattgtcaaaaa 9042510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 256 - 334
Target Start/End: Original strand, 36759196 - 36759274
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattt 334  Q
    |||||||||||||||| |||||||||| | |||||||| ||||||||||  ||||| ||   |||||||||||||||||    
T  36759196 cggtagttaactaccgctgggggcattcaggtattttacttgtgtcaatgtgaagttttttatgtcaaaaaagcaattt 36759274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 275 - 336
Target Start/End: Complemental strand, 10825367 - 10825306
Alignment:
Q  275 ggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||||  |||||||| ||||||||||| ||||| |||||||||| |||||||||||||    
T  10825367 ggggcattttagtattttacttgtgtcaatatgaagttttcattgtcataaaagcaattttc 10825306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 261 - 333
Target Start/End: Complemental strand, 12936332 - 12936260
Alignment:
Q  261 gttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaatt 333  Q
    |||||||||||||||||| | ||  |   |||| |||||||||||||||||||||| ||||||||||||||||    
T  12936332 gttaactaccgttgggggtaatttggacatttacttgtgtcaataggaagtattcaatgtcaaaaaagcaatt 12936260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 23067661 - 23067741
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||||||||||| ||| ||| |||| ||| |||| |||||||||| |||| | |||| ||||| |||||||||||||    
T  23067661 cggtagttaactaccgctggaggcgtttaagtaatttacttgtgtcaattggaacttttcaatgtcagaaaagcaattttc 23067741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 290 - 333
Target Start/End: Complemental strand, 12950458 - 12950415
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaatt 333  Q
    |||| |||||||||||||||||||||| ||||||||||||||||    
T  12950458 tttacttgtgtcaataggaagtattcaatgtcaaaaaagcaatt 12950415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 1690403 - 1690357
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||||||||||||||||||||||||||| | ||||||||    
T  1690403 tttacttgtgtcaataggaagtattcattgtcaaaacaacaattttc 1690357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 332
Target Start/End: Complemental strand, 7483740 - 7483698
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaat 332  Q
    |||| ||||||||||||||||||||||||||||||||| ||||    
T  7483740 tttacttgtgtcaataggaagtattcattgtcaaaaaaacaat 7483698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 7486620 - 7486666
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| |||||||||||| ||||||||||||| |||||||||||||||    
T  7486620 tttacttgtgtcaatagaaagtattcattgtaaaaaaagcaattttc 7486666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 298 - 336
Target Start/End: Complemental strand, 22964705 - 22964667
Alignment:
Q  298 tgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  22964705 tgtcaataggaagtattcaatgtcaaaaaagcaattttc 22964667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 36351291 - 36351337
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||||||||||||||||||||||||||||| || |||||    
T  36351291 tttacttgtgtcaataggaagtattcattgtcaaaaaaacatttttc 36351337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 39940007 - 39939961
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| |||||||||||||||||||||| |||||||||| ||||||||    
T  39940007 tttacttgtgtcaataggaagtattcaatgtcaaaaaaacaattttc 39939961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 279 - 327
Target Start/End: Original strand, 3778469 - 3778517
Alignment:
Q  279 catttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaa 327  Q
    ||||||||||||||| || |||||||||||||||||||| || ||||||    
T  3778469 catttacgtattttacttatgtcaataggaagtattcatggtaaaaaaa 3778517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 19870532 - 19870452
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| |||||||||||  | ||| ||||| |||||||| |||||||||||| || | | | ||||||||||||||||||||    
T  19870532 cggttgttaactaccgcggagggtatttaagtattttacttgtgtcaatagtaactttcctttgtcaaaaaagcaattttc 19870452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 388 - 472
Target Start/End: Complemental strand, 27408320 - 27408236
Alignment:
Q  388 gaaagcttttgggttgatttggcatgccactatatggacgatatggaggtagagaaacgtgaggattttcaaaaaccaattcaag 472  Q
    ||||||||||  |||| |||||||||||||||| |||| ||| |||| | | |||||   ||||||||| |||||||||||||||    
T  27408320 gaaagcttttatgttggtttggcatgccactatttggatgatttggaaggaaagaaattcgaggatttttaaaaaccaattcaag 27408236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 34394213 - 34394261
Alignment:
Q  287 tattttaattgtgtcaataggaagtattcattgtcaaaaaagcaatttt 335  Q
    ||||||| ||||||||||| ||||| |||||||||| ||||||||||||    
T  34394213 tattttacttgtgtcaatatgaagttttcattgtcagaaaagcaatttt 34394261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 43294276 - 43294196
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||||||||||| | | |||||| |||||||||| |||||||  || ||||| |||  |||||||||| ||||||||    
T  43294276 cggtagttaactaccgctagaggcattaacgtattttacttgtgtctttatgaagttttctatgtcaaaaaaacaattttc 43294196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 337
Target Start/End: Original strand, 2401754 - 2401801
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttcc 337  Q
    |||| ||||||||| | |||||||||| ||||||||||||||||||||    
T  2401754 tttagttgtgtcaacaagaagtattcaatgtcaaaaaagcaattttcc 2401801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 333
Target Start/End: Complemental strand, 2897997 - 2897954
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaatt 333  Q
    |||| ||||||||||||||| |||||| ||||||||||||||||    
T  2897997 tttacttgtgtcaataggaaatattcaatgtcaaaaaagcaatt 2897954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 337
Target Start/End: Original strand, 2899098 - 2899145
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttcc 337  Q
    |||| ||||||||||||||| |||||| |||||||||| |||||||||    
T  2899098 tttacttgtgtcaataggaaatattcaatgtcaaaaaaacaattttcc 2899145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 34394061 - 34394010
Alignment:
Q  254 agcggtagttaactaccgttgggggcatttacgtattttaattgtgtcaata 305  Q
    |||||| ||||||| ||| ||| ||||||||||||||||| |||||||||||    
T  34394061 agcggttgttaactgccgctggaggcatttacgtattttacttgtgtcaata 34394010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 7263380 - 7263426
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||||| ||||||| |||||||||| |||||||||||||    
T  7263380 tttacttgtgtcaaaaggaagttttcattgtcagaaaagcaattttc 7263426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 330
Target Start/End: Complemental strand, 6791690 - 6791649
Alignment:
Q  289 ttttaattgtgtcaataggaagtattcattgtcaaaaaagca 330  Q
    ||||| |||||||||||  |||||||||||||||||||||||    
T  6791690 ttttacttgtgtcaatataaagtattcattgtcaaaaaagca 6791649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 252 - 333
Target Start/End: Complemental strand, 12075947 - 12075866
Alignment:
Q  252 tcagcggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaatt 333  Q
    |||||||||||||||||||| ||| || ||||  |||||||| ||||||   ||||||||||| |  |||| ||||||||||    
T  12075947 tcagcggtagttaactaccgctggaggtattttagtattttacttgtgtttttaggaagtattgaaagtcagaaaagcaatt 12075866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 260 - 337
Target Start/End: Original strand, 17646609 - 17646686
Alignment:
Q  260 agttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttcc 337  Q
    |||||||||||| |||||| | ||  ||  |||| ||||||||| |||||||||||  ||||| ||||||||||||||    
T  17646609 agttaactaccgctgggggtaatttggtcatttacttgtgtcaacaggaagtattctatgtcagaaaagcaattttcc 17646686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 254 - 333
Target Start/End: Complemental strand, 18239533 - 18239454
Alignment:
Q  254 agcggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaatt 333  Q
    |||||| ||||||| |||||||||| ||||  |||||||| ||||||||||||||||| |||  ||||||||||||||||    
T  18239533 agcggttgttaactgccgttgggggtattttagtattttacttgtgtcaataggaagttttctatgtcaaaaaagcaatt 18239454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 17684536 - 17684490
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  17684536 tttacttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 17684490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 39855472 - 39855426
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  39855472 tttacttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 39855426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 261 - 336
Target Start/End: Complemental strand, 42463276 - 42463201
Alignment:
Q  261 gttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||  ||||||||| ||||  ||||||||||| |||||||| ||||| |||||||||| |||||||||||||    
T  42463276 gttaactgtcgttgggggtattttagtattttaattatgtcaatatgaagttttcattgtcagaaaagcaattttc 42463201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 253 - 336
Target Start/End: Complemental strand, 45471487 - 45471404
Alignment:
Q  253 cagcggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    ||||||||||||||||||| |||||||||  |||||||||| || ||||  || ||||| |||  |||||||||||||||||||    
T  45471487 cagcggtagttaactaccgctgggggcataaacgtattttacttatgtctttatgaagttttctatgtcaaaaaagcaattttc 45471404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 12792326 - 12792372
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||    
T  12792326 tttacttgtgtcagtaggaagtattcattgtcaaaaaagcaattttc 12792372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 15291230 - 15291150
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||||||||||||||||||| |||| ||| |||| |||||||| | |||| | |||| || |||||||| |||||||    
T  15291230 cggtagttaactaccgttgggggcgtttaagtaatttacttgtgtcacttggaacttttcaatgccaaaaaagaaattttc 15291150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 300 - 336
Target Start/End: Original strand, 33286249 - 33286285
Alignment:
Q  300 tcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||||||||||||||||||||||||||||||||    
T  33286249 tcaataggaagtattcattgtcaaaaaagcaattttc 33286285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 38043466 - 38043386
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||||||||||| ||| || ||||| |||||||| || |||||||||||| | | | || |||||||||||||||||    
T  38043466 cggtagttaactaccgctggaggtatttatgtattttacttctgtcaataggaactttcctttatcaaaaaagcaattttc 38043386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 256 - 319
Target Start/End: Complemental strand, 13706166 - 13706103
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattg 319  Q
    |||||||||||||||||||||||| |||  |||  ||| ||||||||||||||| |||||||||    
T  13706166 cggtagttaactaccgttgggggctttttagtaaattacttgtgtcaataggaaatattcattg 13706103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 258 - 336
Target Start/End: Complemental strand, 33216412 - 33216334
Alignment:
Q  258 gtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||||||||| || | ||||||| |||||||| |||||||| |  ||||| |||| |||||||||| ||||||||    
T  33216412 gtagttaactaccgctgagagcatttaagtattttacttgtgtcattgtgaagttttcaatgtcaaaaaaacaattttc 33216334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 298 - 336
Target Start/End: Original strand, 51936620 - 51936658
Alignment:
Q  298 tgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  51936620 tgtcaataggaagtattcaatgtcaaaaaagcaattttc 51936658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 287 - 336
Target Start/End: Complemental strand, 4911603 - 4911554
Alignment:
Q  287 tattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    ||||||| ||||||||||| ||||| ||||||||||||||| ||||||||    
T  4911603 tattttacttgtgtcaatatgaagttttcattgtcaaaaaaacaattttc 4911554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 256 - 333
Target Start/End: Complemental strand, 18981563 - 18981486
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaatt 333  Q
    ||||||||||||| || ||||| |||||| |||||||| |||||||  |||||||| ||   ||||||||||||||||    
T  18981563 cggtagttaactatcgctggggacatttaagtattttacttgtgtctttaggaagttttttatgtcaaaaaagcaatt 18981486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 256 - 337
Target Start/End: Complemental strand, 21761357 - 21761276
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttcc 337  Q
    |||||||||||||||| | ||||||||||  ||||||| || |||||||  ||||| ||   ||||||||||||||||||||    
T  21761357 cggtagttaactaccgctaggggcatttagatattttacttttgtcaatgtgaagttttttatgtcaaaaaagcaattttcc 21761276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 387 - 472
Target Start/End: Original strand, 24722559 - 24722644
Alignment:
Q  387 agaaagcttttgggttgatttggcatgccactatatggacgatatggaggtagagaaacgtgaggattttcaaaaaccaattcaag 472  Q
    |||||||||||  |||| |||||||||||||||| |||| ||| |||| | | |||||   ||||||||| |||||||||||||||    
T  24722559 agaaagcttttatgttggtttggcatgccactatttggatgatttggaaggaaagaaattcgaggatttttaaaaaccaattcaag 24722644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 256 - 337
Target Start/End: Original strand, 50915336 - 50915417
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttcc 337  Q
    |||| ||||||| ||| ||| ||| |||| |||||||| |||||||||| |||| | |||| ||||| ||||||||||||||    
T  50915336 cggttgttaactgccgctggaggcttttaggtattttacttgtgtcaattggaacttttcaatgtcagaaaagcaattttcc 50915417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 272 - 336
Target Start/End: Complemental strand, 27105691 - 27105627
Alignment:
Q  272 ttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||| |||||  |||||||| ||||||||||| ||||| |||||||||| |||| ||||||||    
T  27105691 ttggggacattttagtattttacttgtgtcaatatgaagttttcattgtcagaaaaacaattttc 27105627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 259 - 335
Target Start/End: Complemental strand, 37770271 - 37770195
Alignment:
Q  259 tagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaatttt 335  Q
    |||||||||||||||||||||||||| ||||||||  ||||||| |  ||||| ||   ||||||||||| ||||||    
T  37770271 tagttaactaccgttgggggcatttaagtattttacgtgtgtcattgcgaagttttttatgtcaaaaaagtaatttt 37770195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 15356394 - 15356440
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| |||||||||||||||||||||  ||||| |||||||||||||    
T  15356394 tttacttgtgtcaataggaagtattctatgtcagaaaagcaattttc 15356440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 23344497 - 23344543
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| |||||| ||||| || ||||||||||||||||||||||||||    
T  23344497 tttacttgtgttaatagaaaatattcattgtcaaaaaagcaattttc 23344543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 336
Target Start/End: Complemental strand, 28861966 - 28861925
Alignment:
Q  295 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    ||||||||||||||||||||   |||||||||||||||||||    
T  28861966 ttgtgtcaataggaagtatttcatgtcaaaaaagcaattttc 28861925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 37505025 - 37505066
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaa 331  Q
    |||| |||||||||||||||||||||| | ||||||||||||    
T  37505025 tttacttgtgtcaataggaagtattcaatatcaaaaaagcaa 37505066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 2893 - 2813
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||||||||||| || ||||||| |||||||||| || |||| ||| ||||| |||  |||||||||||||||||||    
T  2893 cggtagttaactaccgctgtgggcattaacgtattttacttatgtctatatgaagttttctatgtcaaaaaagcaattttc 2813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 256 - 333
Target Start/End: Original strand, 32326 - 32402
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaatt 333  Q
    |||||||||||||||| |||||||||||| |||||||| |||||||| |  ||||| || | ||||||||||||||||    
T  32326 cggtagttaactaccgctgggggcatttaagtattttacttgtgtcattgtgaagttttta-tgtcaaaaaagcaatt 32402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 24512 - 24432
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    ||||||||||| ||||||||||||  ||| |||||||| ||||||||||  ||| |  ||| ||||||||||| |||||||    
T  24512 cggtagttaaccaccgttgggggctattaggtattttacttgtgtcaatgtgaacttatcaatgtcaaaaaagaaattttc 24432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 256 - 333
Target Start/End: Original strand, 29984 - 30060
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaatt 333  Q
    |||||||||||||||| | |||||||||| |||||||| |||| ||| |  ||||| || | ||||||||||||||||    
T  29984 cggtagttaactaccgctaggggcatttaagtattttacttgtatcattgtgaagttttta-tgtcaaaaaagcaatt 30060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 260 - 336
Target Start/End: Complemental strand, 2680 - 2604
Alignment:
Q  260 agttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||| ||| || || |||||  |||||||| |||||||||||||||||  ||||||||| |||||||||||||    
T  2680 agttaactgccgctgaggacattttagtattttacttgtgtcaataggaagttgtcattgtcagaaaagcaattttc 2604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 5915 - 5995
Alignment:
Q  256 cggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||| ||||||| |||| |||||||||||||||| |||||||||| | || | |||| ||||| |||||||||||||    
T  5915 cggttgtttactaccgctgggagcatttacgtattttacttgtgtcaattgaaacttttcaatgtcagaaaagcaattttc 5995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 130566 - 130612
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| |||||||||||||||||||||  |||||||||||||||||||    
T  130566 tttacttgtgtcaataggaagtattctatgtcaaaaaagcaattttc 130612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 260 - 336
Target Start/End: Complemental strand, 127280 - 127204
Alignment:
Q  260 agttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||||||||||| |||||| | ||  ||  |||| ||||||| ||||||||||||| |||||| |||||||||||||    
T  127280 agttaactaccgctgggggtaatttggtcatttacttgtgtcgataggaagtattctttgtcagaaaagcaattttc 127204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0530 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0530
Description:

Target: scaffold0530; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 252 - 333
Target Start/End: Original strand, 7624 - 7705
Alignment:
Q  252 tcagcggtagttaactaccgttgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaatt 333  Q
    |||||||||||||||||||||| |||| ||||  |||||||| ||||||  ||||||  |||| | ||||||||| ||||||    
T  7624 tcagcggtagttaactaccgttcggggtatttttgtattttacttgtgtttataggatctattgaatgtcaaaaatgcaatt 7705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0589 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0589
Description:

Target: scaffold0589; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 5576 - 5622
Alignment:
Q  290 tttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 336  Q
    |||| ||||||||||| |||||||||||||| |||||| ||||||||    
T  5576 tttacttgtgtcaataagaagtattcattgtaaaaaaaacaattttc 5622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University