View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1751-Insertion-20 (Length: 327)
Name: NF1751-Insertion-20
Description: NF1751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1751-Insertion-20 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 327
Target Start/End: Complemental strand, 54917048 - 54916729
Alignment:
| Q |
8 |
tccgtgtcacctattgatccatttataaaagaaacaaaacttctggtttttcttatcttataattatgacatataaaaagtgtataatacattttttatg |
107 |
Q |
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| T |
54917048 |
tccgtgtcacctactgatccatttataaaagaaacaaaacttctggtttttcttatcttataattaggacatataaaaagtgtataatacattttttatg |
54916949 |
T |
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| Q |
108 |
agtgaaaatgggtactgggtgaagaaaagacttttgcacacgtgatctgaatctaccatatcagatgataagaacaacataagtccatgtcacattctac |
207 |
Q |
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| T |
54916948 |
agtgaaaatgggtactgggtgaagaaaagacttttgcacacgtgatctgaatttactatatcagatgataagaacaacataagtccatgtcacattctac |
54916849 |
T |
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| Q |
208 |
tctgttctatgaagcattgatagtgaacttttttagatggcatgtgtagatacaccaaagatatatgtaggtctatgtcatacatctcgtgtatatgcta |
307 |
Q |
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| T |
54916848 |
tccgttctatgaagcattgatagtgaacttttttagatggtatgtgtagatacaccaaagatatatgtaggtctatgtcatacatctcgtgtatatgcta |
54916749 |
T |
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| Q |
308 |
tgtttgagggatttattttg |
327 |
Q |
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| T |
54916748 |
tgtttgagggatttattttg |
54916729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 185
Target Start/End: Complemental strand, 54911663 - 54911559
Alignment:
| Q |
82 |
aaaaagtgtataatacattttttatgagtgaaaatgggtactgggtgaagaaaagacttttgcacacgtgatc-tgaatctaccatatcagatgataaga |
180 |
Q |
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| T |
54911663 |
aaaaagtatatagtacctttttggtgagtgaaaatgggtactgagtggagaggagccttttgcacgagcgatcctgaatctaccctatcagatgataaga |
54911564 |
T |
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| Q |
181 |
acaac |
185 |
Q |
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||||| |
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| T |
54911563 |
acaac |
54911559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 51968416 - 51968339
Alignment:
| Q |
110 |
tgaaaatgggtactgggtgaagaaaagacttttgcacacgtgatc-tgaatctaccatatcagatgataagaacaaca |
186 |
Q |
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| T |
51968416 |
tgaaaatgggtactggttggagaagagccttttgtacacgagaccctgaatctaccatatcagataataagaacaaca |
51968339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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