View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1751-Insertion-21 (Length: 364)
Name: NF1751-Insertion-21
Description: NF1751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1751-Insertion-21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 18)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 7 - 363
Target Start/End: Complemental strand, 37711410 - 37711054
Alignment:
| Q |
7 |
actttcaaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaacttcacaggatatatttcttcaacattctgcaatgc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| || ||| || ||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37711410 |
actttcaaggagatcttccaattccaccttctggcattcaatacttttcactctcaaataacaacttcacaggatacatttcttcaacattctgcaatgc |
37711311 |
T |
|
| Q |
107 |
cagttccctttatatgctcgatttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatattttggatatgcaa |
206 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37711310 |
cagttccctttatgtgctcgatttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatgttttggatatgcaa |
37711211 |
T |
|
| Q |
207 |
atgaacaacctctatggaagcattcctagaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccac |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37711210 |
atgaacaacctctatggaagcattcctagaacctttaccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggatcattaccac |
37711111 |
T |
|
| Q |
307 |
aatctttggctaactgttcatatcttgaagttttggaccttggtgacaacaaagttg |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37711110 |
aatctttggctaactgttcatatcttgaagttttggaccttggtgacaacaacgttg |
37711054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 7 - 363
Target Start/End: Complemental strand, 37639652 - 37639296
Alignment:
| Q |
7 |
actttcaaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaacttcacaggatatatttcttcaacattctgcaatgc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||| || ||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37639652 |
actttcaaggagatcttccaattccaccttctggcattaaatacttttcactctcaaataacaacttcacaggatacatttcttcaacattctgcaatgc |
37639553 |
T |
|
| Q |
107 |
cagttccctttatatgctcgatttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatattttggatatgcaa |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| || ||| | | |||||||||||| |
|
|
| T |
37639552 |
cagttccctttatatgctcgatttggctcacaacaatttgacaggtatgattccacaatgcctgggaacattaacttctcttactgtattggatatgcaa |
37639453 |
T |
|
| Q |
207 |
atgaacaacctctatggaagcattcctagaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccac |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37639452 |
atgaacaacctctatggaagcattcctagaaccttctccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccac |
37639353 |
T |
|
| Q |
307 |
aatctttggctaactgttcatatcttgaagttttggaccttggtgacaacaaagttg |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37639352 |
aatctttggctaactgttcatatcttgaagttttggaccttggtgacaacaacgttg |
37639296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 7 - 363
Target Start/End: Original strand, 37401252 - 37401608
Alignment:
| Q |
7 |
actttcaaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaacttcacaggatatatttcttcaacattctgcaatgc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| || ||| || ||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37401252 |
actttcaaggagatcttccaattccaccttctggcattcaatacttttcactctcaaataacaacttcacaggatacatttcttcaacattctgcaatgc |
37401351 |
T |
|
| Q |
107 |
cagttccctttatatgctcgatttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatattttggatatgcaa |
206 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| || ||| || | |||||||||||| |
|
|
| T |
37401352 |
cagttccctttatgtgctcgatttggctcacaacaatttgacaggtatgattccacaatgcctgggaacattaacttctcttaatgtattggatatgcaa |
37401451 |
T |
|
| Q |
207 |
atgaacaacctctatggaagcattcctagaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccac |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37401452 |
atgaacaacctctatggaagcattcctagaacctttaccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccac |
37401551 |
T |
|
| Q |
307 |
aatctttggctaactgttcatatcttgaagttttggaccttggtgacaacaaagttg |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37401552 |
aatctttggctaactgttcatatcttgaagttttggaccttggtgacaacaacgttg |
37401608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 12 - 363
Target Start/End: Complemental strand, 37823805 - 37823454
Alignment:
| Q |
12 |
caaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaacttcacaggatatatttcttcaacattctgcaatgccagtt |
111 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || ||| || ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37823805 |
caaggagatcttccaattccaccttctggcattcaatacttttcactctcaaataacaacttcacaggatacatttcttcaacattctgcaatgccagtt |
37823706 |
T |
|
| Q |
112 |
ccctttatatgctcgatttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatattttggatatgcaaatgaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| | ||| || | ||||||||||||||||| |
|
|
| T |
37823705 |
ccctttatatgctcgatttggctcacaacaatttgacaggtatgattccacaatgcctgggaacattaaattctcttcatgtattggatatgcaaatgaa |
37823606 |
T |
|
| Q |
212 |
caacctctatggaagcattcctagaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatct |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37823605 |
caacctctatggaagcattcctagaacctttaccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatct |
37823506 |
T |
|
| Q |
312 |
ttggctaactgttcatatcttgaagttttggaccttggtgacaacaaagttg |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37823505 |
ttggctaactgttcatatcttgaagttttggaccttggtgacaacaacgttg |
37823454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 12 - 358
Target Start/End: Original strand, 37393136 - 37393482
Alignment:
| Q |
12 |
caaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaacttcacaggatatatttcttcaacattctgcaatgccagtt |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
37393136 |
caaggtgatcttccaattccacctgatggcattgaagactttttactctcaaacaacaacttcacaggagatatttcttcaacattctgcaatgctagtt |
37393235 |
T |
|
| Q |
112 |
ccctttatatgctcgatttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatattttggatatgcaaatgaa |
211 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||| || |||||| ||||||||||||||||||||| |
|
|
| T |
37393236 |
ccctttatatcctcaatttggctcacaacaatttgacaggtatgattccacaatgtctaggaacattttcttatctctctattttggatatgcaaatgaa |
37393335 |
T |
|
| Q |
212 |
caacctctatggaagcattcctagaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatct |
311 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
37393336 |
caacctctgtggaagcattcctggaaccttttccaaaggaaatatatttgagactataaaattgaatggaaaccaattggaaggaccattaccacaatgt |
37393435 |
T |
|
| Q |
312 |
ttggctaactgttcatatcttgaagttttggaccttggtgacaacaa |
358 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37393436 |
ttggcttactgttcatatcttgaagtattggaccttggtgacaacaa |
37393482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 12 - 358
Target Start/End: Complemental strand, 37702584 - 37702238
Alignment:
| Q |
12 |
caaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaacttcacaggatatatttcttcaacattctgcaatgccagtt |
111 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| | ||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||| |
|
|
| T |
37702584 |
caaggacatcttccaattccacctcatggcattgtacactttttactctcaaacaacaacttcacaggaaatatctcttcaacattctgcaatgcaagtt |
37702485 |
T |
|
| Q |
112 |
ccctttatatgctcgatttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatattttggatatgcaaatgaa |
211 |
Q |
| |
|
||||||| || ||| ||||||||||||||||||||| |||||||||||||||||| || |||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
37702484 |
ccctttacattctcaatttggctcacaacaatttgacaggtatgattccacaatgtctgggaacatttcctcatctctctattttggatatgcaaatgaa |
37702385 |
T |
|
| Q |
212 |
caacctctatggaagcattcctagaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatct |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
37702384 |
caacctctatggaagcattcctagaaccttctccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccgcagtct |
37702285 |
T |
|
| Q |
312 |
ttggctaactgttcatatcttgaagttttggaccttggtgacaacaa |
358 |
Q |
| |
|
|||||| | |||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
37702284 |
ttggctcaatgttcaaatcttgaagtattggaccttggtgacaacaa |
37702238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 358
Target Start/End: Complemental strand, 37594110 - 37593759
Alignment:
| Q |
7 |
actttcaaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaacttcacaggatatatttcttcaacattctgcaatgc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||| |
|
|
| T |
37594110 |
actttcaaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaatttcacaggagatatatcttcaacattctgcaatgc |
37594011 |
T |
|
| Q |
107 |
cagttccctttatatgctcgatttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatattttggatatgcaa |
206 |
Q |
| |
|
|||| ||| || | ||| ||||||||||||||||||| | ||||||||||||||||||||| |||||||| || ||| || | |||||||||||| |
|
|
| T |
37594010 |
aagttacctgaatgttctcaatttggctcacaacaatttaacaggtatgattccacaatgcctgggaacattaacttctcttaatgtattggatatgcaa |
37593911 |
T |
|
| Q |
207 |
atgaacaacctctatggaagcattcctagaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccac |
306 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37593910 |
atgaacaacctctatggaaacattcctagaaccttttccaaagaaaatgcatttcagactataaagttgaatggaaaccaattggaaggaccattaccac |
37593811 |
T |
|
| Q |
307 |
aatctttggctaactgttcatatcttgaagttttggaccttggtgacaacaa |
358 |
Q |
| |
|
| |||||| || ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37593810 |
agtctttgtctcactgttcatttcttgaagttttggaccttggtgacaacaa |
37593759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 358
Target Start/End: Complemental strand, 37696499 - 37696150
Alignment:
| Q |
9 |
tttcaaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaacttcacaggatatatttcttcaacattctgcaatgcca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||| | |
|
|
| T |
37696499 |
tttcaaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaatttcacaggagatatatcttcaacattctgcaatgcaa |
37696400 |
T |
|
| Q |
109 |
gttccctttatatgctcgatttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatattttggatatgcaaat |
208 |
Q |
| |
|
||| ||| || | ||| ||||||||||||||||||| | ||||||||||||||||||||| |||||||| || ||| || | |||||||||||||| |
|
|
| T |
37696399 |
gttacctgaatgttctcaatttggctcacaacaatttaacaggtatgattccacaatgcctgggaacattaacttctcttaatgtattggatatgcaaat |
37696300 |
T |
|
| Q |
209 |
gaacaacctctatggaagcattcctagaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaa |
308 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37696299 |
gaacaacctctatggaaacattcctagaaccttttccaaagaaaatgcatttcagactataaagttgaatggaaaccaattggaaggaccattaccacag |
37696200 |
T |
|
| Q |
309 |
tctttggctaactgttcatatcttgaagttttggaccttggtgacaacaa |
358 |
Q |
| |
|
|||||| || ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37696199 |
tctttgtctcactgttcatttcttgaagttttggaccttggtgacaacaa |
37696150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 358
Target Start/End: Complemental strand, 37533001 - 37532655
Alignment:
| Q |
12 |
caaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaacttcacaggatatatttcttcaacattctgcaatgccagtt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||| || ||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
37533001 |
caaggagatcttccaattccacctgatggcattggatacttttcactctcaaataacaacttcacaggagatatttcttcaacattctgcaatgcaagtt |
37532902 |
T |
|
| Q |
112 |
ccctttatatgctcgatttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatattttggatatgcaaatgaa |
211 |
Q |
| |
|
||| || | ||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||| || ||| || | ||||||||||||||||| |
|
|
| T |
37532901 |
acctgaatgttctcaatttggctcacaacaatttgacaggtatgattccacaatgcctgggaacattaacttctcttaatgtattggatatgcaaatgaa |
37532802 |
T |
|
| Q |
212 |
caacctctatggaagcattcctagaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatct |
311 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||| || ||| |
|
|
| T |
37532801 |
caacctctatggaaacattcctagaaccttttccaaagaaaatgcatttcagactataaagttgaatggaaaccaattggaaggaccattaccccagtct |
37532702 |
T |
|
| Q |
312 |
ttggctaactgttcatatcttgaagttttggaccttggtgacaacaa |
358 |
Q |
| |
|
||| || ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37532701 |
ttgtctcactgttcatttcttgaagttttggaccttggtgacaacaa |
37532655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 12 - 358
Target Start/End: Original strand, 37382585 - 37382931
Alignment:
| Q |
12 |
caaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaacttcacaggatatatttcttcaacattctgcaatgccagtt |
111 |
Q |
| |
|
||||||||||||||||| |||| | |||||||| | ||| ||||||||| |||||||||||||||||| | ||| || |||| ||||| || |||| |
|
|
| T |
37382585 |
caaggagatcttccaatcccacgttatggcatttactactttttactctcgaacaacaacttcacaggaaacattgatttttcattgtgcaacgcaagtt |
37382684 |
T |
|
| Q |
112 |
ccctttatatgctcgatttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatattttggatatgcaaatgaa |
211 |
Q |
| |
|
|||| || ||||| ||||||||||||||||||| | || ||||||||||||||| | |||||||||||| ||| | | ||||||||||||||||| |
|
|
| T |
37382685 |
ccctgaatgtgctcaatttggctcacaacaatttaactggcatgattccacaatgcttgggaacatttccttctctttcggtattggatatgcaaatgaa |
37382784 |
T |
|
| Q |
212 |
caacctctatggaagcattcctagaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatct |
311 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||| ||| |
|
|
| T |
37382785 |
caacctctatggacacattcctagaaccttctccaaaggaaatgcatttgagacaataaagttgaatggaaaccgattggaaggaccattaccacagtct |
37382884 |
T |
|
| Q |
312 |
ttggctaactgttcatatcttgaagttttggaccttggtgacaacaa |
358 |
Q |
| |
|
|||||| ||||| || | || ||||||||||||||||| |||||||| |
|
|
| T |
37382885 |
ttggctcactgtacaaaactcgaagttttggaccttggagacaacaa |
37382931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 12 - 358
Target Start/End: Complemental strand, 37435611 - 37435265
Alignment:
| Q |
12 |
caaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaacttcacaggatatatttcttcaacattctgcaatgccagtt |
111 |
Q |
| |
|
|||||||| ||||||||||| | ||||||||| || ||| ||| |||||||||||||||||| ||||| | |||||||||| ||| ||| | || || | |
|
|
| T |
37435611 |
caaggagacattccaattccatccgatggcattgaatactttttgctctcaaacaacaacttcgcaggagacatttcttcaaaattgtgccaagcaagct |
37435512 |
T |
|
| Q |
112 |
ccctttatatgctcgatttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatattttggatatgcaaatgaa |
211 |
Q |
| |
|
|| | | ||||| ||||||| |||||||| |||| ||| || |||||| ||||||| |||||||||||| ||| | ||||||||||||||||||| |
|
|
| T |
37435511 |
ccatgaacgtgctcaatttggcccacaacaaattgacaggcataattccaaaatgcctgggaacatttccttttctttccgttttggatatgcaaatgaa |
37435412 |
T |
|
| Q |
212 |
caacctctatggaagcattcctagaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatct |
311 |
Q |
| |
|
|||||| |||||||||| |||| ||| ||||||| ||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
37435411 |
caaccttaatggaagcatgcctaaaactttttccagaggaaatgccttcgagactataaagttgaatggcaaccaattagaaggaccattacctcaatct |
37435312 |
T |
|
| Q |
312 |
ttggctaactgttcatatcttgaagttttggaccttggtgacaacaa |
358 |
Q |
| |
|
|||||| ||||| || | || || ||||||||||||| ||||||| |
|
|
| T |
37435311 |
ttggctcactgtacagaactcaaaattttggaccttggatacaacaa |
37435265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 135 - 358
Target Start/End: Original strand, 37413547 - 37413770
Alignment:
| Q |
135 |
cacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatattttggatatgcaaatgaacaacctctatggaagcattccta |
234 |
Q |
| |
|
||||||||||| | ||| |||||||||||||||||||||||||||||| ||| | ||| ||||||||||||||||||||| | ||||||||| |||||| |
|
|
| T |
37413547 |
cacaacaatttaacaggcatgattccacaatgcctaggaacatttccttctctttctatattggatatgcaaatgaacaacttgtatggaagctttccta |
37413646 |
T |
|
| Q |
235 |
gaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatctttggctaactgttcatatcttga |
334 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||| || || ||||||||||||||||||||||| ||||||||| | || | ||||||| |
|
|
| T |
37413647 |
gaaccttttccaaaggaaatacatttgagatgataaagttgaacggaaatcaattggaaggaccattaccacagtctttggcttagtgcataaatcttga |
37413746 |
T |
|
| Q |
335 |
agttttggaccttggtgacaacaa |
358 |
Q |
| |
|
|||| ||||||||||||||||||| |
|
|
| T |
37413747 |
agttctggaccttggtgacaacaa |
37413770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 37594240 - 37594110
Alignment:
| Q |
12 |
caaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaacttcacaggatatatttcttcaacattctgcaatgccagtt |
111 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || ||| || ||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
37594240 |
caaggagatcttccaattccaccttctggcattcaatacttttcactctcaaataacaacttcacaggaaatatttcttcaacattctgcaatgcaagtt |
37594141 |
T |
|
| Q |
112 |
ccctttatatgctcgatttggctcacaacaa |
142 |
Q |
| |
|
||||||||| ||| |||||||||||||||| |
|
|
| T |
37594140 |
ccctttataccctcaatttggctcacaacaa |
37594110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 37696631 - 37696498
Alignment:
| Q |
12 |
caaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaacttcacaggatatatttcttcaacattctgcaatgccagtt |
111 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| | ||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
37696631 |
caaggagatcttccaattccaccttctagcattggatacttttcactctcaaacaacaacttcacaggaaatatttcttcaacattctgcaatgcaagtt |
37696532 |
T |
|
| Q |
112 |
ccctttatatgctcgatttggctcacaacaattt |
145 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||| |
|
|
| T |
37696531 |
ccctttataccctcaatttggctcacaacaattt |
37696498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 37639782 - 37639652
Alignment:
| Q |
12 |
caaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaacttcacaggatatatttcttcaacattctgcaatgccagtt |
111 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | ||| |||||||||||| ||||||||||||||| ||||||||||||||||| |||| || |||| |
|
|
| T |
37639782 |
caaggacatcttccaattccacctgatggcattgtatactttttactctcaaataacaacttcacaggaaatatttcttcaacattccgcaacgcaagtt |
37639683 |
T |
|
| Q |
112 |
ccctttatatgctcgatttggctcacaacaa |
142 |
Q |
| |
|
||||||||| ||| |||||||||||||||| |
|
|
| T |
37639682 |
ccctttataccctcaatttggctcacaacaa |
37639652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 12 - 142
Target Start/End: Original strand, 37401122 - 37401252
Alignment:
| Q |
12 |
caaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaacttcacaggatatatttcttcaacattctgcaatgccagtt |
111 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || ||| || ||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
37401122 |
caaggagatcttccaattccaccttctggcattgaatacttttcactctcaaataacaacttcacaggatacatttcttcaacattctgcaatgcaagtt |
37401221 |
T |
|
| Q |
112 |
ccctttatatgctcgatttggctcacaacaa |
142 |
Q |
| |
|
||||| || ||| |||||||||||||||| |
|
|
| T |
37401222 |
cccttcgtaccctcaatttggctcacaacaa |
37401252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 37711540 - 37711410
Alignment:
| Q |
12 |
caaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaacttcacaggatatatttcttcaacattctgcaatgccagtt |
111 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || ||| || ||||||||| ||||||||||||||| ||||||||||||||||| |||| || |||| |
|
|
| T |
37711540 |
caaggagatcttccaattccaccatctggcattcaatacttttcactctcaaataacaacttcacaggaaatatttcttcaacattccgcaacgcaagtt |
37711441 |
T |
|
| Q |
112 |
ccctttatatgctcgatttggctcacaacaa |
142 |
Q |
| |
|
||||||||| ||| |||||||||||||||| |
|
|
| T |
37711440 |
ccctttataccctcaatttggctcacaacaa |
37711410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 37428641 - 37428578
Alignment:
| Q |
12 |
caaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaacttca |
75 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| || ||| ||||||||| ||||||||||||| |
|
|
| T |
37428641 |
caaggagatcttccaattccaccttatggcattgaatactttttactctctaacaacaacttca |
37428578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 9 - 358
Target Start/End: Original strand, 16843252 - 16843601
Alignment:
| Q |
9 |
tttcaaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaacttcacaggatatatttcttcaacattctgcaatgcca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||| || ||||||||| ||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
16843252 |
tttcaaggagatcttccaattccacctgatggcattgtatacttttcactctcaaataacaacttcacaggagatatttcttcaacattctgcaatgcaa |
16843351 |
T |
|
| Q |
109 |
gttccctttatatgctcgatttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatattttggatatgcaaat |
208 |
Q |
| |
|
|| ||||| || |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||| || | |||||||||||||| |
|
|
| T |
16843352 |
gtacccttaatttgcttaatttggctcacaacaatttgacaggtatgattccacaatgcctaggaacattaacttctcttaatgtattggatatgcaaat |
16843451 |
T |
|
| Q |
209 |
gaacaacctctatggaagcattcctagaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
16843452 |
gaacaacctctatggaagcattcctaaaaccttttccaaaggaaatgcatttcagactataaagttgaatggaaaccaattggaaggaccattaccacag |
16843551 |
T |
|
| Q |
309 |
tctttggctaactgttcatatcttgaagttttggaccttggtgacaacaa |
358 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16843552 |
tctttgtctcactgttcatatcttgaagttttggaccttggtgacaacaa |
16843601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 12 - 358
Target Start/End: Original strand, 16845919 - 16846269
Alignment:
| Q |
12 |
caaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaacttcacaggatatatttcttcaacattctgcaatgccagtt |
111 |
Q |
| |
|
|||||||| ||||||||||| | ||||||||||| ||| ||| |||||||||||||||||||||| | |||| ||||| |||||||||| ||| |||| |
|
|
| T |
16845919 |
caaggagacattccaattccatattatggcattaaatactttttgctctcaaacaacaacttcacagaagatatgtcttccacattctgcagtgcaagtt |
16846018 |
T |
|
| Q |
112 |
ccctttatatgctcgatttggctcacaacaatttgaaaggtatgat----tccacaatgcctaggaacatttcctaatctctatattttggatatgcaaa |
207 |
Q |
| |
|
||| | | ||| ||||||||||||||||||| | | ||||||| |||||||||| | |||||||| || ||| || | ||||||||||||| |
|
|
| T |
16846019 |
tcctgattgttctcaatttggctcacaacaatttaatatgtatgatatattccacaatgcttgggaacattaacttctcttaatgtattggatatgcaaa |
16846118 |
T |
|
| Q |
208 |
tgaacaacctctatggaagcattcctagaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccaca |
307 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16846119 |
tgaacaacctctttggaagcattcctagaaccttttccaaaggaaatgtgtttgtcactataaagttgaatggcaaccaattggaaggaccattaccacg |
16846218 |
T |
|
| Q |
308 |
atctttggctaactgttcatatcttgaagttttggaccttggtgacaacaa |
358 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16846219 |
gtctttagctaactgttcatatcttgaagttttggaccttggtgacaacaa |
16846269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 12 - 357
Target Start/End: Original strand, 24217990 - 24218335
Alignment:
| Q |
12 |
caaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaacttcacaggatatatttcttcaacattctgcaatgccagtt |
111 |
Q |
| |
|
|||||||| ||||| |||||||| |||| ||| || ||| || ||||||||||||||||||||||||| | ||| ||| || | |||||||| |||| |
|
|
| T |
24217990 |
caaggagaccttccgattccaccctatggaattcaatacttttcactctcaaacaacaacttcacaggagacattgctttgtcactgtgcaatgcaagtt |
24218089 |
T |
|
| Q |
112 |
ccctttatatgctcgatttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatattttggatatgcaaatgaa |
211 |
Q |
| |
|
|||| || ||||| |||||||| |||||||||| | ||| | ||||||||||||||| |||||||||||| |||| | | | ||||||||||||||||| |
|
|
| T |
24218090 |
ccctgaatttgctcaatttggctaacaacaatttaacaggaacgattccacaatgcctgggaacatttccttatctttctgtattggatatgcaaatgaa |
24218189 |
T |
|
| Q |
212 |
caacctctatggaagcattcctagaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatct |
311 |
Q |
| |
|
|||||||||||||||||| |||| ||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
24218190 |
caacctctatggaagcatgcctaaaacattttcggaaggaaatgcattcgagactataaagttgaatggcaaccaattggagggaccattaccacagtct |
24218289 |
T |
|
| Q |
312 |
ttggctaactgttcatatcttgaagttttggaccttggtgacaaca |
357 |
Q |
| |
|
|||||| |||| || | |||||||||||||||||||| ||||||| |
|
|
| T |
24218290 |
ttggctcactgcacacaacttgaagttttggaccttggagacaaca |
24218335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 16843120 - 16843253
Alignment:
| Q |
12 |
caaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaacttcacaggatatatttcttcaacattctgcaatgccagtt |
111 |
Q |
| |
|
|||||||| ||||||||||| || ||||| || || ||| || |||||||||||||||||||||||| | ||||||||||||||||||||||| |||| |
|
|
| T |
16843120 |
caaggagacattccaattccatcttatggccttcaatacttttcgctctcaaacaacaacttcacaggagacatttcttcaacattctgcaatgcaagtt |
16843219 |
T |
|
| Q |
112 |
ccctttatatgctcgatttggctcacaacaattt |
145 |
Q |
| |
|
| | || | ||| ||||||||||||||||||| |
|
|
| T |
16843220 |
tcttgaatgttctcaatttggctcacaacaattt |
16843253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 96 - 357
Target Start/End: Complemental strand, 14553189 - 14552928
Alignment:
| Q |
96 |
ttctgcaatgccagttccctttatatgctcgatttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatattt |
195 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| || ||||||||| ||||| ||||| |
|
|
| T |
14553189 |
ttctgcaatgcaagttccctttatatgctcaatttggctcacaacaatttgacaggtatgattccacaatgcctggggacatttcctcttctctctattt |
14553090 |
T |
|
| Q |
196 |
tggatatgcaaatgaacaacctctatggaagcattcctagaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaagg |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
14553089 |
tggatatgcaaatgaacaacctctatggaatcattcctagaaccttttcaaaaggaaatgcatttgagactataaagttgaatggaaaccaattgaaagg |
14552990 |
T |
|
| Q |
296 |
accattaccacaatctttggctaactgttcatatcttgaagttttggaccttggtgacaaca |
357 |
Q |
| |
|
|||| ||||||| || |||||| |||||||| |||||||||| || |||||||||||||||| |
|
|
| T |
14552989 |
accactaccacagtcattggctcactgttcaaatcttgaagtattagaccttggtgacaaca |
14552928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University