View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1751-Insertion-22 (Length: 256)
Name: NF1751-Insertion-22
Description: NF1751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1751-Insertion-22 |
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Alignment Details
Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 15171352 - 15171275
Alignment:
| Q |
170 |
atccattttggcggaatagcgcttcttcagatgggaagcaacaccagataaaaaacttggaacatcattgagtataat |
247 |
Q |
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| T |
15171352 |
atccattttggcggaatagcgcttcttcagatgggaagcaacaccagataaaaaacttggaacattattgagtataat |
15171275 |
T |
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Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 15171515 - 15171459
Alignment:
| Q |
13 |
cacactcctacgcatcttcagaactcttcttccatcaaagctactccaaccgccttg |
69 |
Q |
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| T |
15171515 |
cacactcctacgcatcttcagaactcttcttccatcaaagctactccaaccgccttg |
15171459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 7500305 - 7500239
Alignment:
| Q |
5 |
acacaaatcacac--tcctacgcatcttcagaactcttcttccatcaaagctactccaaccgccttg |
69 |
Q |
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| T |
7500305 |
acacaaatcacacattcctacgcatcttcagaactctccttccttcatagctactccaaccgccttg |
7500239 |
T |
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