View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1751-Insertion-24 (Length: 293)
Name: NF1751-Insertion-24
Description: NF1751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1751-Insertion-24 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 147 - 293
Target Start/End: Original strand, 552622 - 552768
Alignment:
| Q |
147 |
agacacttatgtgacatctatctcaaactttttcaacattgacacaagtatgaatagatacttaattgatctcgtttgtcctgtaagtacaactcaattg |
246 |
Q |
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| T |
552622 |
agacacttatgtgacatctatctcaaactttttcaacattgacacaagtatgaatagatacttaattgatctcatttgtcctgtaagtacaactcaattg |
552721 |
T |
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| Q |
247 |
gtaactgcatatattgatatgcaggagtttgacttctacattgtttc |
293 |
Q |
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| T |
552722 |
gtaactgcatatgttgatatgcaggagtttgacttctacattgtttc |
552768 |
T |
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Target: chr6; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 7345335 - 7345477
Alignment:
| Q |
7 |
attatcaaggtccttttctgcaaataggagggttaacgtaaaataaaaagacaattgttcatgtcacaagagattactacgaagatatcgaacagacaac |
106 |
Q |
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| T |
7345335 |
attatcaaggtccttctctgcaaataggagggttaacgtaaaataaaaagacaattgttcatgtcacaagagattactacgaagatgtcgaacatgcaac |
7345434 |
T |
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| Q |
107 |
tcccgcgacatcttccatgagaagcaaacaaaacttcttaaga |
149 |
Q |
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| T |
7345435 |
tcccgcgacatctcccatgagaagcaaacgaaacttcttaaga |
7345477 |
T |
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