View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1751-Insertion-4 (Length: 717)
Name: NF1751-Insertion-4
Description: NF1751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1751-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-147; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 397 - 712
Target Start/End: Original strand, 29943207 - 29943522
Alignment:
| Q |
397 |
cttaaggttgaaaactgattgttggataactttactttgttgataatgtaaagataaatgaggataaatgtgcaaaactgaaattttttgttaatacgct |
496 |
Q |
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| T |
29943207 |
cttaaggttgaaaaccgattgttggataactttactttgctgataatgtaaagataaatgaggataaatgttcaaaattgaaattttttgttaatacgct |
29943306 |
T |
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| Q |
497 |
tgcaacaattgtcaaggatcttatgaagcgacgcttctccttccagtgcattcatttagaataaatttgtttgttttttaggtacccttgtttgcgtgga |
596 |
Q |
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| T |
29943307 |
tgcaacaattgccaaggatcttatgaagtgacgcttctccttccagtgcattcatttagaataaatttgttagttttttaggtacccttgtttgcgtgga |
29943406 |
T |
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| Q |
597 |
gatttgtgaataataggtttcatacaaaaaacggtctaactaaacgtggattttacaatctaatttaagatcgtgtgtggca-gtgtggtatagaggaaa |
695 |
Q |
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| T |
29943407 |
gattggtgaataataggtttcatacaaaaaacggtcttactaaacgtggattttacaatctaatttaagatcgtgtgtggcaggtgtggtatagaggaaa |
29943506 |
T |
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| Q |
696 |
caattcatatatttttt |
712 |
Q |
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| T |
29943507 |
caattca-atatttttt |
29943522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 253 - 400
Target Start/End: Original strand, 29939823 - 29939970
Alignment:
| Q |
253 |
taaaattatgtagaattgttctactcattaattgaattaaggttctcttcaacaattcgttctttaatgaagttcatgaacgagttgagttcaattgttt |
352 |
Q |
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| T |
29939823 |
taaaattatgtagaattgttctactcattaatcgaattaaggttctcttcaacaattcgttctttaatgaagttcatgaacgagttgagttcaattgttt |
29939922 |
T |
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| Q |
353 |
agtttaacttgtttgcttaatactacattgttaggaaaatggtactta |
400 |
Q |
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| T |
29939923 |
aatttaacttgtttctttaatactacattgtaaggaaaatggtactta |
29939970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 38 - 180
Target Start/End: Original strand, 29939609 - 29939750
Alignment:
| Q |
38 |
tttggacactactaccaactcaataatttaaataaaa-gaccatgacctctcttttaggctcaattcaaaggtgtacagtttataatagttaaggtatca |
136 |
Q |
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| T |
29939609 |
tttggacactactaccaactcaataatttaaataaaaagaccatgacctctcttttaggctcaattcaaaggggtacagttta--atatttaaggtatca |
29939706 |
T |
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| Q |
137 |
gtgcacgactaaccattacttgtttctttttcttttctaaacta |
180 |
Q |
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| T |
29939707 |
gtgcacaactaaccattacttttttctttttcttttctaaacta |
29939750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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