View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1751-Insertion-5 (Length: 785)
Name: NF1751-Insertion-5
Description: NF1751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1751-Insertion-5 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 716; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 716; E-Value: 0
Query Start/End: Original strand, 17 - 785
Target Start/End: Complemental strand, 48709353 - 48708585
Alignment:
| Q |
17 |
tgcaaagaccgaatcagtttgttgcgtgaagattgtccataactggcatgcacacaacctgtaaagtgcaaccatcaattgaattgttgaaatcatgatc |
116 |
Q |
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| T |
48709353 |
tgcaaagaccgaatcagtttgttgcgtgaagatcgtccataactggcatgcacacaacctgtaaagtgcaaccatcaattgaattgttgaaatcatgatc |
48709254 |
T |
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| Q |
117 |
ataatataatatattaataagcagcattgcttgaaatttttaacacagtttaatatattcaaattattcagagataaaatgaaaaaagatacaattctga |
216 |
Q |
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| T |
48709253 |
ataatataatatattaataagcagcattgcttgaaatttttaacacagtttaatatattcaaattattcagagataaaatgaaaaaagatacaattctga |
48709154 |
T |
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| Q |
217 |
gattcataaattaccatcagaaccaaatcataagtgcaagcagcgcctgaccgcacgcactgcttctgctccatcgcttcatcatggattgtgttatcat |
316 |
Q |
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| T |
48709153 |
gattcataaattaccatcagaaccaaatcataagtgcaagcagcgcttgaccgcacgcactgcttctgctccatcgtttcatcatggattgtgttatcat |
48709054 |
T |
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| Q |
317 |
gatgttaatcttgtcatcttcaacaagaagtaatgagaactgtcgctggtgatcaagaccttgtatgggagtagagtaggaatatgaatgttagactacc |
416 |
Q |
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| T |
48709053 |
gatattaatcttctcatcttcaacaagaagtaatgagaactgtcgctggtgatcaagaccttgtatgggagtagagtaggaatatgaatgttagactacc |
48708954 |
T |
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| Q |
417 |
cccatcaattcaacctatgccaagtgcaaaacattgttagcaattttgtatgtgaagaaaacaaatgaaatgtgacattcaacaaaagaaaaggtggatg |
516 |
Q |
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| T |
48708953 |
cccatcaattcaacctatgccaagtgcaaaacattgttagcaattttgtatgtgaagaaaacaaatgaaatgtgacattcaacaaaagaaaaggtggatg |
48708854 |
T |
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| Q |
517 |
gaaatgaaatttgtgtttagtatgcatttgataacagtactaaacttagataaagtcttactttttctgtcatnnnnnnncagtgaacttatctttaaaa |
616 |
Q |
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| T |
48708853 |
gaaatgaaatttgtgtttagtatgaatttgataacagtactaaacttagataaagtcttagtttttctgtcataaaaaaacagtgaacttatctttaaaa |
48708754 |
T |
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| Q |
617 |
ttggtataagtttgcattaaaattaaatcaaataatccagcatgatattgaagtctcacttgcaaaaagtgacacatacaagaacatgctcaatgatttg |
716 |
Q |
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| T |
48708753 |
ttggtataagtttgcattaaaattaaatcaaataatccagcatgatattgaagtctcacttgcaaaaagtgacacatacaagaacatgctcaatgatttg |
48708654 |
T |
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| Q |
717 |
atgggaagctgcaagcacaacccgatttgaactttctggctgtgtctattgactttaaacgatgttgga |
785 |
Q |
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| T |
48708653 |
atgggaagctgcaagcacaacccgatttgaactttctggctgtgtgtattgactttaaacgatgttgga |
48708585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 48697771 - 48697719
Alignment:
| Q |
294 |
ttcatcatggattgtgttatcatgatgttaatcttgtcatcttcaacaagaag |
346 |
Q |
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| T |
48697771 |
ttcatcatggattgtgtcaccatgatgttaatcttgttatcttcaacaagaag |
48697719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 48698043 - 48697975
Alignment:
| Q |
20 |
aaagaccgaatcagttt-gttgcgtgaagattgtccataactggcatgcacacaacctgtaaagtgcaa |
87 |
Q |
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| T |
48698043 |
aaagaccgaattagttttgttgcttgaagaccatccataattggcatgcacacatcctgtaaagtgcaa |
48697975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 610 - 676
Target Start/End: Original strand, 13866698 - 13866764
Alignment:
| Q |
610 |
tttaaaattggtataagtttgcattaaaattaaatcaaataatccagcatgatattgaagtctcact |
676 |
Q |
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| T |
13866698 |
tttagaattggtatatgttaactttagaattaaatcaaataatccatcatgatattaaagtatcact |
13866764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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