View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1751-Insertion-6 (Length: 692)

Name: NF1751-Insertion-6
Description: NF1751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1751-Insertion-6
NF1751-Insertion-6
[»] chr6 (5 HSPs)
chr6 (7-587)||(7345335-7345910)
chr6 (599-683)||(8522925-8523009)
chr6 (601-659)||(2287966-2288024)
chr6 (601-659)||(15539282-15539340)
chr6 (599-683)||(15686144-15686222)
[»] chr1 (3 HSPs)
chr1 (365-583)||(49077175-49077393)
chr1 (599-670)||(20579456-20579528)
chr1 (599-661)||(2333021-2333083)
[»] chr5 (3 HSPs)
chr5 (365-583)||(29358431-29358650)
chr5 (599-683)||(26495879-26495963)
chr5 (599-683)||(29325264-29325348)
[»] chr3 (7 HSPs)
chr3 (599-683)||(55292448-55292531)
chr3 (599-683)||(10554429-10554512)
chr3 (599-683)||(54973379-54973463)
chr3 (599-683)||(54975989-54976073)
chr3 (599-683)||(54978599-54978683)
chr3 (601-659)||(16799818-16799876)
chr3 (599-659)||(54046723-54046782)
[»] chr2 (7 HSPs)
chr2 (599-667)||(20591144-20591212)
chr2 (599-683)||(21239149-21239233)
chr2 (599-683)||(21241699-21241783)
chr2 (599-683)||(24504696-24504780)
chr2 (599-667)||(31503593-31503661)
chr2 (599-667)||(31506159-31506227)
chr2 (601-659)||(28349082-28349139)
[»] chr8 (3 HSPs)
chr8 (599-683)||(45134949-45135033)
chr8 (599-667)||(6608312-6608380)
chr8 (599-648)||(7301138-7301187)
[»] chr4 (6 HSPs)
chr4 (599-683)||(41791665-41791749)
chr4 (599-667)||(4171019-4171087)
chr4 (599-667)||(14698711-14698779)
chr4 (599-667)||(16278149-16278217)
chr4 (599-667)||(53387759-53387827)
chr4 (488-571)||(24101676-24101759)
[»] chr7 (7 HSPs)
chr7 (599-670)||(16006411-16006483)
chr7 (599-667)||(21743343-21743411)
chr7 (599-667)||(17505826-17505894)
chr7 (599-667)||(17547320-17547388)
chr7 (599-683)||(8776356-8776437)
chr7 (599-661)||(38828240-38828302)
chr7 (599-659)||(35366234-35366293)
[»] scaffold0525 (1 HSPs)
scaffold0525 (599-683)||(9164-9248)
[»] scaffold0395 (1 HSPs)
scaffold0395 (601-659)||(8548-8605)


Alignment Details
Target: chr6 (Bit Score: 415; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 7 - 587
Target Start/End: Original strand, 7345335 - 7345910
Alignment:
Q  7 attatcaaggtccttttctgcaaataggagggttaacgtaaaataaaaagacaattgttcatgtcacaagagattactacgaagatatcgaacagacaac 106  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||    
T  7345335 attatcaaggtccttctctgcaaataggagggttaacgtaaaataaaaagacaattgttcatgtcacaagagattactacgaagatgtcgaacatgcaac 7345434  T
Q  107 tcccgcgacatcttccatgagaagcaaacaaaacttcttaagaagatcagtcataaccattaacctgttaccgaatctagtttaaaacaatattgatttt 206  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7345435 tcccgcgacatctcccatgagaagcaaacgaaacttcttaagaagatcagtcataaccattaacttgttaccgaatctagtttaaaacaatattgatttt 7345534  T
Q  207 atgacgnnnnnnnnnnnnnnnnnnnnnnttaattatcataaacaaacacgtatgatctttcggtttaataaaaattgccaaaaagtaatcactttaactt 306  Q
    ||||||                      ||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||    
T  7345535 atgacgaaataaaatataaaaaataaatttaattatcataaacaaacacgtatgatcctccggtttaataaaaattgccaaaaaataatcactttaactt 7345634  T
Q  307 actttcaaactattgaaccctagctctctccattggtcgctgtccacgtaggtgaagtgaagcactagctctttttcatgctttacaatggatacgtgac 406  Q
    ||||||||||||||||||||||||||||||  ||||| |||||||| ||||||||     ||||||||||||||||||||||||||||||||||||||||    
T  7345635 actttcaaactattgaaccctagctctctcgcttggttgctgtccaagtaggtga-----agcactagctctttttcatgctttacaatggatacgtgac 7345729  T
Q  407 atgtggtttgacaacgtggattctgtagtcgacttaaaattaacagcaggtgctatcttatcgaacatagatgattttattgagttcgaccaaataattg 506  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7345730 atgtggtttgacaacgtgaattttgtagtcgacttaaaattaacagcaggtgctatcttatcgaacatagatgattttattgagttcgaccaaataattg 7345829  T
Q  507 cagcatgtcagaatactttgtcctcctcttttacaaactatagggtggagtttaaccgacgacaagctaacgtggtagcac 587  Q
    ||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  7345830 cagcacgtcagaatactttgtcctcctctttcacaaactctagggtggagtttaaccggcgacaagctaacgtggtagcac 7345910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 599 - 683
Target Start/End: Original strand, 8522925 - 8523009
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaa-tcaacagcaacatataataataaagcagcgggacaa 683  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||| |||||    
T  8522925 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaattcaacaacaacatataataat-aagcagcgagacaa 8523009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 601 - 659
Target Start/End: Complemental strand, 2288024 - 2287966
Alignment:
Q  601 gaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaatcaacagcaaca 659  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2288024 gaatgcatttatgcataaaccaacaatcagcatcaaatcatattcaatcaacagcaaca 2287966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 601 - 659
Target Start/End: Original strand, 15539282 - 15539340
Alignment:
Q  601 gaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaatcaacagcaaca 659  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  15539282 gaatgcatttatgcataaactaacaatcagcatcaaatcatattcaatcaacagcaaca 15539340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 599 - 683
Target Start/End: Complemental strand, 15686222 - 15686144
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaatcaacagcaacatataataataaagcagcgggacaa 683  Q
    |||||||| |||||||||||||||||||||||||||||     ||||||||||||||||||||||||||| |||||||| |||||    
T  15686222 ttgaatgcgtttatgcataaaccaacaatcagcagcaa-----attcaatcaacagcaacatataataat-aagcagcgagacaa 15686144  T

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Target: chr1 (Bit Score: 127; Significance: 3e-65; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 365 - 583
Target Start/End: Original strand, 49077175 - 49077393
Alignment:
Q  365 gaagcactagctctttttcatgctttacaatggatacgtgacatgtggtttgacaacgtggattctgtagtcgacttaaaattaacagcaggtgctatct 464  Q
    ||||||||||||||||||||||||||||||||| || | |||||| | |||||||||||||||| ||||||||||| |||| | ||||||| || |||||    
T  49077175 gaagcactagctctttttcatgctttacaatggctatgcgacatgcgttttgacaacgtggattttgtagtcgactcaaaaattacagcagatgatatct 49077274  T
Q  465 tatcgaacatagatgattttattgagttcgaccaaataattgcagcatgtcagaatactttgtcctcctcttttacaaactatagggtggagtttaaccg 564  Q
    ||||||||| ||   || ||| |||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||| ||    
T  49077275 tatcgaacaaagtgaatgttactgagttcggccaaataattgcagcatgtcataatactttgtcctcctctttcacaaactctagggtggagtttaatcg 49077374  T
Q  565 acgacaagctaacgtggta 583  Q
     ||||||||||||||||||    
T  49077375 gcgacaagctaacgtggta 49077393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 599 - 670
Target Start/End: Original strand, 20579456 - 20579528
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaa-tcaacagcaacatataataataa 670  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  20579456 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaattcaacaacaacatataataataa 20579528  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 599 - 661
Target Start/End: Complemental strand, 2333083 - 2333021
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaatcaacagcaacata 661  Q
    ||||||||| ||||||| |||||| || |||||| |||| ||||||||||||| |||||||||    
T  2333083 ttgaatgcagttatgcacaaaccagcagtcagcaacaaaacatattcaatcaatagcaacata 2333021  T

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Target: chr5 (Bit Score: 104; Significance: 2e-51; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 365 - 583
Target Start/End: Original strand, 29358431 - 29358650
Alignment:
Q  365 gaagcactagctctttttcatgctttacaatggatacgtgacatgtggtttgacaa-cgtggattctgtagtcgacttaaaattaacagcaggtgctatc 463  Q
    ||||| ||||||||||| |||||||||||||| ||| |||||||||||||||| || ||| |||| ||||||||| | |||| | ||| ||| |||||||    
T  29358431 gaagccctagctcttttccatgctttacaatgaataagtgacatgtggtttgagaaacgtagattttgtagtcgattcaaaaattacaccagatgctatc 29358530  T
Q  464 ttatcgaacatagatgattttattgagttcgaccaaataattgcagcatgtcagaatactttgtcctcctcttttacaaactatagggtggagtttaacc 563  Q
    |||||||||| ||  ||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||  |||||||||| |    
T  29358531 ttatcgaacagagtggatgttactgagttcggccaaataattgcagcatgtcagaatactttgtcctcctctttcacaaactctagtctggagtttaatc 29358630  T
Q  564 gacgacaagctaacgtggta 583  Q
    | ||| ||| ||||||||||    
T  29358631 ggcgataagttaacgtggta 29358650  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 599 - 683
Target Start/End: Original strand, 26495879 - 26495963
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaa-tcaacagcaacatataataataaagcagcgggacaa 683  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||| |||||    
T  26495879 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaattcaacaacaacatataataat-aagcagcgagacaa 26495963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 599 - 683
Target Start/End: Complemental strand, 29325348 - 29325264
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaa-tcaacagcaacatataataataaagcagcgggacaa 683  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||| |||||    
T  29325348 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaattcaacaacaacatataataat-aagcagcgagacaa 29325264  T

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Target: chr3 (Bit Score: 73; Significance: 5e-33; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 599 - 683
Target Start/End: Complemental strand, 55292531 - 55292448
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaatcaacagcaacatataataataaagcagcgggacaa 683  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  55292531 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaatcaacagcaacatataataat-aagcagcgagacaa 55292448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 599 - 683
Target Start/End: Original strand, 10554429 - 10554512
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaatcaacagcaacatataataataaagcagcgggacaa 683  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  10554429 ttgaatgcatttatccataaaccaacaatcagcagcaaatcatattcaatcaacagcaacatataataat-aagcagcgagacaa 10554512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 599 - 683
Target Start/End: Original strand, 54973379 - 54973463
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaa-tcaacagcaacatataataataaagcagcgggacaa 683  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||| |||||    
T  54973379 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaattcaacaacaacatataataat-aagcagcgagacaa 54973463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 599 - 683
Target Start/End: Original strand, 54975989 - 54976073
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaa-tcaacagcaacatataataataaagcagcgggacaa 683  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||| |||||    
T  54975989 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaattcaacaacaacatataataat-aagcagcgagacaa 54976073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 599 - 683
Target Start/End: Original strand, 54978599 - 54978683
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaa-tcaacagcaacatataataataaagcagcgggacaa 683  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||| |||||    
T  54978599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaattcaacaacaacatataataat-aagcagcgagacaa 54978683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 601 - 659
Target Start/End: Original strand, 16799818 - 16799876
Alignment:
Q  601 gaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaatcaacagcaaca 659  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||    
T  16799818 gaatgcatttatgcataaaccaacaatcaacatcaaatcatattcaatcaacaacaaca 16799876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 599 - 659
Target Start/End: Original strand, 54046723 - 54046782
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaatcaacagcaaca 659  Q
    ||||||||| ||| ||||||||||||||||| || | ||||||| |||||||||| |||||    
T  54046723 ttgaatgcagttaagcataaaccaacaatcatcaac-aatcataatcaatcaacaacaaca 54046782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 599 - 667
Target Start/End: Complemental strand, 20591212 - 20591144
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaatcaacagcaacatataataa 667  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20591212 ttgaatgcatttatgcatacaccaacaatcagcagcaaatcatattcaatcaacagcaacatataataa 20591144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 599 - 683
Target Start/End: Complemental strand, 21239233 - 21239149
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaa-tcaacagcaacatataataataaagcagcgggacaa 683  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||| |||||    
T  21239233 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaattcaacaacaacatataataat-aagcagcgagacaa 21239149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 599 - 683
Target Start/End: Complemental strand, 21241783 - 21241699
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaa-tcaacagcaacatataataataaagcagcgggacaa 683  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||| |||||    
T  21241783 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaattcaacaacaacatataataat-aagcagcgagacaa 21241699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 599 - 683
Target Start/End: Original strand, 24504696 - 24504780
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaa-tcaacagcaacatataataataaagcagcgggacaa 683  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||| |||||    
T  24504696 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaattcaacaacaacatataataat-aagcagcgagacaa 24504780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 599 - 667
Target Start/End: Original strand, 31503593 - 31503661
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaatcaacagcaacatataataa 667  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31503593 ttgaatgcatgtatgcatacaccaacaatcagcagcaaatcatattcaatcaacagcaacatataataa 31503661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 599 - 667
Target Start/End: Original strand, 31506159 - 31506227
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaatcaacagcaacatataataa 667  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31506159 ttgaatgcatgtatgcatacaccaacaatcagcagcaaatcatattcaatcaacagcaacatataataa 31506227  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 601 - 659
Target Start/End: Original strand, 28349082 - 28349139
Alignment:
Q  601 gaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaatcaacagcaaca 659  Q
    ||||||| ||| |||||||||| ||||||||| ||| ||||||||||||||||||||||    
T  28349082 gaatgcagttaagcataaaccagcaatcagcaacaa-tcatattcaatcaacagcaaca 28349139  T

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Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 599 - 683
Target Start/End: Complemental strand, 45135033 - 45134949
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaa-tcaacagcaacatataataataaagcagcgggacaa 683  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||| |||||    
T  45135033 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaattcaacaacaacatataataat-aagcagcgagacaa 45134949  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 599 - 667
Target Start/End: Complemental strand, 6608380 - 6608312
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaatcaacagcaacatataataa 667  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6608380 ttgaatgcatgtatgcatacaccaacaatcagcagcaaatcatattcaatcaacaacaacatataataa 6608312  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 599 - 648
Target Start/End: Complemental strand, 7301187 - 7301138
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaat 648  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7301187 ttgaatgcatttatgcataaaccaacaatcaacagcaaatcatattcaat 7301138  T

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Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 599 - 683
Target Start/End: Original strand, 41791665 - 41791749
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaa-tcaacagcaacatataataataaagcagcgggacaa 683  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||| |||||    
T  41791665 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaattcaacaacaacatataataat-aagcagcgagacaa 41791749  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 599 - 667
Target Start/End: Original strand, 4171019 - 4171087
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaatcaacagcaacatataataa 667  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4171019 ttgaatgcatgtatgcatacaccaacaatcagcagcaaatcatattcaatcaacagcaacatataataa 4171087  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 599 - 667
Target Start/End: Original strand, 14698711 - 14698779
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaatcaacagcaacatataataa 667  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14698711 ttgaatgcatgtatgcatacaccaacaatcagcagcaaatcatattcaatcaacagcaacatataataa 14698779  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 599 - 667
Target Start/End: Complemental strand, 16278217 - 16278149
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaatcaacagcaacatataataa 667  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  16278217 ttgaatgcatgtatgcatacaccaacaatcagcagcaaatcatattcaatcaacaacaacatataataa 16278149  T

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Target: chr4; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 599 - 667
Target Start/End: Complemental strand, 53387827 - 53387759
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaatcaacagcaacatataataa 667  Q
    ||||||||||  ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  53387827 ttgaatgcatgcatgcatacaccaacaatcagtagcaaatcatattcaatcaacagcaacatataataa 53387759  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 488 - 571
Target Start/End: Complemental strand, 24101759 - 24101676
Alignment:
Q  488 gagttcgaccaaataattgcagcatgtcagaatactttgtcctcctcttttacaaactatagggtggagtttaaccgacgacaa 571  Q
    |||||| || |||||||||||||||||||||| ||| | ||||||  ||| ||| ||| |||||| |||||||| |||||||||    
T  24101759 gagttctacaaaataattgcagcatgtcagaacactctttcctccagtttcacatactctagggttgagtttaatcgacgacaa 24101676  T

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Target: chr7 (Bit Score: 61; Significance: 8e-26; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 599 - 670
Target Start/End: Original strand, 16006411 - 16006483
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaa-tcaacagcaacatataataataa 670  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  16006411 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaattcaacaacaacatataataataa 16006483  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 599 - 667
Target Start/End: Complemental strand, 21743411 - 21743343
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaatcaacagcaacatataataa 667  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21743411 ttgaatgcatgtatgcatacaccaacaatcagcagcaaatcatattcaatcaacagcaacatataataa 21743343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 599 - 667
Target Start/End: Complemental strand, 17505894 - 17505826
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaatcaacagcaacatataataa 667  Q
    |||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17505894 ttgaatgcatgtatgcatacaccaacaatcagtagcaaatcatattcaatcaacagcaacatataataa 17505826  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 599 - 667
Target Start/End: Original strand, 17547320 - 17547388
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaatcaacagcaacatataataa 667  Q
    |||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17547320 ttgaatgcatgtatgcatacaccaacaatcagtagcaaatcatattcaatcaacagcaacatataataa 17547388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 599 - 683
Target Start/End: Original strand, 8776356 - 8776437
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaatcaacagcaacatataataataaagcagcgggacaa 683  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   || |||||||||||||| |||||||| |||||    
T  8776356 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaat--tcaacaacatataataat-aagcagcgagacaa 8776437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 599 - 661
Target Start/End: Original strand, 38828240 - 38828302
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaatcaacagcaacata 661  Q
    |||||||||  |||||| |||||| || |||||| |||||||||||||||||| |||||||||    
T  38828240 ttgaatgcagctatgcacaaaccagcagtcagcaacaaatcatattcaatcaatagcaacata 38828302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 599 - 659
Target Start/End: Original strand, 35366234 - 35366293
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaatcaacagcaaca 659  Q
    ||||||||| ||| |||||||||| |||||| || ||| ||||||||||||||||||||||    
T  35366234 ttgaatgcaattaagcataaaccagcaatcatcaacaa-tcatattcaatcaacagcaaca 35366293  T

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Target: scaffold0525 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 599 - 683
Target Start/End: Original strand, 9164 - 9248
Alignment:
Q  599 ttgaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaa-tcaacagcaacatataataataaagcagcgggacaa 683  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||| ||| |||||||| |||||    
T  9164 ttgaatgcatttatgcataaaccaacaatcagcagcgaatcatattcaattcaacaacaacatataacaat-aagcagcgagacaa 9248  T

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Target: scaffold0395 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 601 - 659
Target Start/End: Complemental strand, 8605 - 8548
Alignment:
Q  601 gaatgcatttatgcataaaccaacaatcagcagcaaatcatattcaatcaacagcaaca 659  Q
    ||||||| ||| |||||||||| ||||||||| ||| |||||||||||||||| |||||    
T  8605 gaatgcagttaagcataaaccagcaatcagcaacaa-tcatattcaatcaacaacaaca 8548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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