View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1751-Insertion-7 (Length: 631)
Name: NF1751-Insertion-7
Description: NF1751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1751-Insertion-7 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 336
Target Start/End: Complemental strand, 4846098 - 4845769
Alignment:
| Q |
11 |
gtagctatgttcaatttgttaataatgttctttatcttctcat---attcatattccacttgagtcttcttgctctttcttttacaatctctactaccat |
107 |
Q |
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| T |
4846098 |
gtagctatgttcaatttgctaataatgttctttatcttctcatcatattcatattccacttgagtcttcttgctcttttttttacaatctttactaccat |
4845999 |
T |
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| Q |
108 |
tcctatcattgtttatcnnnnnnnnnacatctcagttatttttt-cctttctcgaggggttattcaattggcaatgtggaaattatataaccaaaaccat |
206 |
Q |
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| T |
4845998 |
tcttattattgtttatcttttttttgacatctcagttatttttttcctttctcgaggggttattcaattggcaatgtggaaattatataaccaaaaccat |
4845899 |
T |
|
| Q |
207 |
caaatgggagatatgattgtgtaatagtggaaacagaacttttcataatttaatggctaggacatatcacatgttttcatatgtctgttttgaaacgttg |
306 |
Q |
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| T |
4845898 |
caaatgggagatatgattgtgtaatagtggaaactgaacttttcatactttaatggctaggacatatcacatgttttcatatgtctgttttggaacgttg |
4845799 |
T |
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| Q |
307 |
ttttatcccccatgactttggcttattgtc |
336 |
Q |
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| T |
4845798 |
ttttatcccccatgactttggcttattgtc |
4845769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 406
Target Start/End: Complemental strand, 4845735 - 4845684
Alignment:
| Q |
356 |
tttgtatcccttt-gttagtttatagtttttatgcaatacttagatgtacat |
406 |
Q |
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| T |
4845735 |
tttgtatcccttttgttagtttatagtttttatgcaatatttagatgtacat |
4845684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 346 - 560
Target Start/End: Original strand, 4080820 - 4081035
Alignment:
| Q |
346 |
agttgactcttttgtatccctttgttagtttatagtttt-tatgcaatacttagatgtacatgtggtatgccttttaattatctaggtgagaagcattcc |
444 |
Q |
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| T |
4080820 |
agttgactcttttgtatccctttgttagtttatagttttttatgcaatacttagatgtacatgtggtatgccttttaattatctaggtgagaagcattcc |
4080919 |
T |
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| Q |
445 |
ttggcccgatatgagtttattaatatgtttttgttgttcttagggaagccaatcttctgcatgtccttataatttgttttttacttttatatattcgaga |
544 |
Q |
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| T |
4080920 |
ttggcctgatatgagtttattaatatgcttttgttgtccttagggaagccaatcttctgcatgtccttataatttgttttttgcttttatatattcgaga |
4081019 |
T |
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| Q |
545 |
ttggatatggacaatg |
560 |
Q |
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| T |
4081020 |
ttggatatggacaatg |
4081035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 7 - 181
Target Start/End: Original strand, 4080602 - 4080776
Alignment:
| Q |
7 |
atatgtagctatgttcaatttgttaataatgttctttatcttctcatattcatattccacttgagtcttcttgctctttcttttacaatctctactacca |
106 |
Q |
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| T |
4080602 |
atatgtagctatgttcaatttgctaataatgttctttatcttctcatattcatattccgcttgagtctttttgctcttttttttacaatttctactacca |
4080701 |
T |
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| Q |
107 |
ttcctatcattgtttatcnnnnnnnnnacatctcagtta-ttttttcctttctcgaggggttattcaattggcaat |
181 |
Q |
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| T |
4080702 |
ttcctattattgtttatc-tttttttgacatctcagttatttttttcctttctcgaggggttattaaattggcaat |
4080776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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