View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1751-Insertion-8 (Length: 694)
Name: NF1751-Insertion-8
Description: NF1751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1751-Insertion-8 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 348 - 694
Target Start/End: Complemental strand, 34348470 - 34348124
Alignment:
| Q |
348 |
aaaagttcattattttacaatgatgaaaaattatgccgatcagaatttcatcctagccacatgtctatcatccgctagatgatgacatgacactaatgat |
447 |
Q |
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| T |
34348470 |
aaaagttcattattttacaatgatgaaaaattatgccgatcagaatttcatcctagccacatgtctatcacccgctagatgatgacatgacactaatgat |
34348371 |
T |
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| Q |
448 |
gtggctatttggtgcgacgtggcaccaaaatatgatgtggtgcaccttgtcaacacgccacatgttctaaattcgatgagacaaatgaaaatggactaaa |
547 |
Q |
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| T |
34348370 |
gtggctatttggtgcgacatggcaccaaaatatgatgtggtgcaccttgtcaacacgccacatgttctaaattcgatgagacaaatgaaaatagactaaa |
34348271 |
T |
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| Q |
548 |
acaacgagaatcttaaatatgggataaaattgaagaacaaaaaattaagagacaaaaaccaaaattcgttgaaatgttagggaacgaaaacctaaaattg |
647 |
Q |
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| T |
34348270 |
acaacgagaatcttaaatatgggacaaaattgaagaacaaaaaattaagagacaaaaaccaaaattcgttgaaatgttagggaacgaaaacctaaaattg |
34348171 |
T |
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| Q |
648 |
ttttagaccggactcttggtcaaatccacatggaaaaacccaattac |
694 |
Q |
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| T |
34348170 |
tttcagaccggactcttggtcaaatccacatggaaaagcccaattac |
34348124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 7 - 260
Target Start/End: Complemental strand, 34348793 - 34348552
Alignment:
| Q |
7 |
acaaactaccatttgaagattcaccctaataacaccaagaaagataccaacacatcaattagtaattagatcaaaataaatgttctaaattaaagagaac |
106 |
Q |
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| T |
34348793 |
acaaactaccatttgaagattcaccctaataacaccaagaaagataccaacacatcaattagtaattagatcaaaataaatgctctaaattaaagagaac |
34348694 |
T |
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| Q |
107 |
ttatctttgttgctttgtttattcatcctctttttcacatgtgaacatgtaattctaaaaatctt-aatcataactggttgtccctagtactcatatttc |
205 |
Q |
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| T |
34348693 |
ttatctt--------tgtttattcatcctctttctcacatgtgaacatgtaattcaaaaaatcttaaatcataactggttgtccctagtactcatatttc |
34348602 |
T |
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| Q |
206 |
accaccacatttgaatacaaatactataatatcatacttttgtgagtagtattga |
260 |
Q |
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| T |
34348601 |
accaccacatttgaatac-----caataatatcatacttttgtgagtagtattga |
34348552 |
T |
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