View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1751-Insertion-9 (Length: 656)
Name: NF1751-Insertion-9
Description: NF1751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1751-Insertion-9 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 46 - 347
Target Start/End: Original strand, 42177164 - 42177471
Alignment:
| Q |
46 |
attacaaagttctcatgctgaattcgtctaaagatacgcaacacaagattgctcacactctacatgggtggtcattaaattcttnnnnnnnnnnnnnnnn |
145 |
Q |
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| T |
42177164 |
attacaaagttctcatgctgaattcgtctaaagatacgcaacacaagattgctcacactctacatgggtggtcattaaattcttcaaaaaaaaaaaaaa- |
42177262 |
T |
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| Q |
146 |
nngggtgtgagctaccttac--gtattgaaaccttaatgttgaattaaatgaacaatacttccatgctatccactcgagatttacaatacttccatatgt |
243 |
Q |
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| T |
42177263 |
--gggtgtgagcaaccttacatgtattgaaaccttaatgttgaattaaatgaacaatacttccatgctatccactcgagatttacaatacttccatatgt |
42177360 |
T |
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| Q |
244 |
tgataaacaacattttgaagaaaaaagattttttgctgaagaaactacatatttattagcc-------acatatctatgattatgtccaatgagaaacaa |
336 |
Q |
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| T |
42177361 |
tgataaacaacattttgaagaaaaaagattttttgctgaagaaactacatatttattagccacatattacatatatatgattatgtccaatgagaaacaa |
42177460 |
T |
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| Q |
337 |
cactttgtaaa |
347 |
Q |
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| T |
42177461 |
cactttgtaaa |
42177471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 311 - 611
Target Start/End: Original strand, 42177478 - 42177771
Alignment:
| Q |
311 |
ctatgattatgtccaatgagaaacaacactttgtaaacnnnnnnnngattcttcataagttatcatcatctgaaattttaccatgtaacaacgtaacaac |
410 |
Q |
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| T |
42177478 |
ctatgataatgttcaatgagaaacaacactttgtaaacaaaaaaaagattcttcataagttatcatcatctgaaattttaccatgtaacaacgtaacaac |
42177577 |
T |
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| Q |
411 |
atatttatattttgtccaatgagtaacaacatatttatgatttcttnnnnnnnnnnnnnnnnnnntttataatacacgacgagtacgtataattggaccc |
510 |
Q |
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| T |
42177578 |
atatttatattttgtccaatgagtaacaacatatttataatttcttaaaaaaataata-------tttataatacacgacgagtacgtataattggaccc |
42177670 |
T |
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| Q |
511 |
tcgatcgagattcatgaatccaccatctttatttctaaccaaaaaattataacgaggtggaaacccatatgtagagatgatataaatagacttggtcctt |
610 |
Q |
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| T |
42177671 |
tcgatcgagattcatgaatccaccatctttatttctaaccaaaaaattataacgaggtggaaacccatatgtagagatgatataaatagacacggtcctt |
42177770 |
T |
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