View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17510_high_2 (Length: 591)

Name: NF17510_high_2
Description: NF17510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17510_high_2
NF17510_high_2
[»] chr2 (1 HSPs)
chr2 (1-591)||(6917094-6917695)


Alignment Details
Target: chr2 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 1 - 591
Target Start/End: Complemental strand, 6917695 - 6917094
Alignment:
Q  1 caccatctcttagtggaaactgagtgtttgtgatcaatattattattgaataataagtctgtgcatttagcattttatattgagtgtgctcaaacaacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6917695 caccatctcttagtggaaactgagtgtttgtgatcaatattattattgaataataagtctgtgcatttagcattttatattgagtgtgctcaaacaacaa 6917596  T
Q  101 gcaaaaggaaaatcagaacctatatgtttcggaatcaacctcgccgcgctcaatcttgatggcctggaacttgcctttctggacagttgtgacctctgta 200  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6917595 gcaaatggaaaatcagaacctatatgtttcgaaatcaacctcgccgcgctcaatcttgatggcctggaacttgccattctggacagttgtgacctctgta 6917496  T
Q  201 -ggggagcgaagtgctcccggcttcaaactcgtctccggatagtacctgtttcctgttgcagaactggtgtgtgttctcgttgggctcaactgttgccgg 299  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6917495 tggggagcgaagtgctcccggcttcaaactcgtctccggatagtacctgttccctgttgcagaactggtgtgtgttctcgttgggctcaactgttgccgg 6917396  T
Q  300 gaacgaacacggcttcagat-aattcttgggcgg--tctcctgggcggctaggcttccacgagcacagcacagctcaaactgattgccagatacgggagc 396  Q
    |||||||||||||||||||| |||||||||||||  ||||||||| ||||| |||||||||||||  ||||||||||||||| |||||||||||||||||    
T  6917395 gaacgaacacggcttcagatcaattcttgggcggcctctcctgggtggctacgcttccacgagcatggcacagctcaaactgtttgccagatacgggagc 6917296  T
Q  397 ggactcgtctcaaactgctgcggcttcaggatcaatctctgagcgtgtccatgggaaactcggggtgctgtcaatgg-------cgagctttgactaatg 489  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||       ||||||||||||||||    
T  6917295 agactcgtctcaaactgctgcggcttcaggatcaatctctgagcgtgtctgtgggaaactcggcgtgctgtcaatggcgctgctcgagctttgactaatg 6917196  T
Q  490 aaggcggttcaacggagacttcactgtcgccgccgtgaatgatgctaaactgaattttcttccaacagttcttctgcctattgagattcagaggaacatt 589  Q
    |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6917195 aaggcggtttggcggagacttcactgtcgccgccgtgaatgatgctaaactgaattttcttccaacagttcttctgcctattgagattcagaggaacatt 6917096  T
Q  590 gc 591  Q
    ||    
T  6917095 gc 6917094  T

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