View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17510_high_6 (Length: 305)
Name: NF17510_high_6
Description: NF17510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17510_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 128 - 296
Target Start/End: Complemental strand, 43533149 - 43532981
Alignment:
| Q |
128 |
gtcggttatatcagttgatccaacatgagtgttctgatgaacaaacaatccttctctgaaacaagtagacagagtgatcacagtagcaaaacaagagaaa |
227 |
Q |
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| T |
43533149 |
gtcggttatatcagttgatccaatatgagtgttctgatgaacaaacaatccttctctgaaacaagtagacagagtgatcacagtagcaaaacaagagaaa |
43533050 |
T |
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| Q |
228 |
atgctaaccaattttctgcatagagattacagtcttatttattgcacgtcccattgctttgagaataat |
296 |
Q |
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| T |
43533049 |
atgctaaccaattttctgcatagagattacagtcttatttattgcacgtcccattgctttgagaataat |
43532981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 43528863 - 43528739
Alignment:
| Q |
132 |
gttatatcagttgatccaacatgagtgttctgatgaaca--aacaatccttctctgaaacaagtagacagagtgatcacagtagcaaaacaagagaaaat |
229 |
Q |
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| T |
43528863 |
gttatatcagttgatccaacttgagtgttctgatgaagaccaacaatccttctctgaaacaagtagacagagcggtcacaatagcaaaacaagagaaaat |
43528764 |
T |
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| Q |
230 |
gctaaccaattttctgcatagagat |
254 |
Q |
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| T |
43528763 |
gccaaccaattttctgcatagagat |
43528739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 43533339 - 43533211
Alignment:
| Q |
1 |
gtatccagctctttctcttataaagtaattgtgatcatcggaacatgacgagtactccaaactgagcaagtaaaacacaacggnnnnnnnncaatcacac |
100 |
Q |
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| T |
43533339 |
gtatccagctctttctcttataaagtaattgtgatcatccaaacatgacgggtactccaaactgagcaagtaaaacacaacggaaaaaaaacaatcacac |
43533240 |
T |
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| Q |
101 |
tcatgcatatacataaatt-atttgacag |
128 |
Q |
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| T |
43533239 |
tcatgcatatacataaattaatttgacag |
43533211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 43529054 - 43528929
Alignment:
| Q |
1 |
gtatccagctctttctcttataaagtaattgtgatcatcggaacatgacgagta--ctccaaactgag--caagtaaaacacaacggnnnnnnnncaatc |
96 |
Q |
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| T |
43529054 |
gtatccagctctttctttgacaaagtaattgtaatcatcgaaacatgacgagtagtctccaaactgagcacaagtaaaacacaacg------aaaaaatc |
43528961 |
T |
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| Q |
97 |
acactcatgcatatacataaattatttgacag |
128 |
Q |
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| T |
43528960 |
atactcatgcatatacataaattatttgacag |
43528929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 43537739 - 43537658
Alignment:
| Q |
1 |
gtatccagctctttctcttataaagtaattgtgatcatcggaacatgacgagta--ctccaaactgagcaagtaaaacacaa |
80 |
Q |
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| T |
43537739 |
gtatccagctctttctttgacagcgtaattgtgatcattgaaacatgacgagtagtctccaaactgagcaagtaaaacacaa |
43537658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 43537549 - 43537478
Alignment:
| Q |
132 |
gttatatcagttgatccaacatgagtgttctgatgaaca--aacaatccttctctgaaacaagtagacagag |
201 |
Q |
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| T |
43537549 |
gttatatcagttgatccaatttgagtgttctgatgcagaccaacaatccttctctgaaacaagtagaaagag |
43537478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 292
Target Start/End: Complemental strand, 43528705 - 43528666
Alignment:
| Q |
253 |
attacagtcttatttattgcacgtcccattgctttgagaa |
292 |
Q |
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| T |
43528705 |
attacagtcttatttattgcacgtcccattgctttgagaa |
43528666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 43523296 - 43523220
Alignment:
| Q |
1 |
gtatccagctctttctcttataaagtaattgtgatcatcggaacatgacgagta--ctccaaactgagcaagtaaaa |
75 |
Q |
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|||||||||||||||| | | ||||||||||||||||| | ||||||||||||| ||||||||| |||||||||| |
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| T |
43523296 |
gtatccagctctttctttgacaaagtaattgtgatcattgaaacatgacgagtagtttccaaactgcgcaagtaaaa |
43523220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 43537391 - 43537355
Alignment:
| Q |
253 |
attacagtcttatttattgcacgtcccattgctttga |
289 |
Q |
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| T |
43537391 |
attacagtcttatttattgcacgtcccattgctttga |
43537355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 290
Target Start/End: Complemental strand, 43522939 - 43522905
Alignment:
| Q |
256 |
acagtcttatttattgcacgtcccattgctttgag |
290 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
43522939 |
acagtcttatttatcgcacgtcccattgctttgag |
43522905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 43523107 - 43523046
Alignment:
| Q |
132 |
gttatatcagttgatccaacatgagtgttctgatg--aacaaacaatccttctctgaaacaa |
191 |
Q |
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| T |
43523107 |
gttatatcagttgatccaataatagtgttctgatgcagaccaacaatccttctctgaaacaa |
43523046 |
T |
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