View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17510_low_1 (Length: 646)
Name: NF17510_low_1
Description: NF17510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17510_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 299
Target Start/End: Complemental strand, 45201204 - 45200920
Alignment:
| Q |
15 |
cacagaaaaaagaactgccctggttgctgacatgaagagaaggaaactaggtgaagagtagccaagtgtttcaacaaagctaaaggccaaaaacataaga |
114 |
Q |
| |
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|||||||||||||| ||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| | |
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| T |
45201204 |
cacagaaaaaagaattgccccggtcgctgacatgaagaggaggaaactaggtgaagagtagccaagtgtttcaacaaagctgaaagccaaaaacataata |
45201105 |
T |
|
| Q |
115 |
cagaaagaagttgcattcgctgagataatcaagaaacagttgcagatataggtgtgaaagagttgcttgtaaagtgctattatcaaagagaacgaaggtg |
214 |
Q |
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|| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||| ||||| | |
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| T |
45201104 |
caaaaagaagttgcatttgctgagataattaagaaacagttgcagatataggtatgaaagagtggcttgtaaagtgctattatcgaagagaatgaaggcg |
45201005 |
T |
|
| Q |
215 |
gcaaagatggtttattgtgattgagtttaagagcttgaattatggatgcttttgcaatgagaaggacagtgagtgtgaaaggaag |
299 |
Q |
| |
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||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
45201004 |
gcaaagatggtttattgtgattgagtttaagtgcatgaattatggatgcttttgcaatcagaaggacagttagtgtgaaaggaag |
45200920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 300 - 627
Target Start/End: Complemental strand, 52412346 - 52412014
Alignment:
| Q |
300 |
gatgtgatagcggaagaggaagtaatttatgccaagaagaatgagatgc-----ttagcaactacagggattactcattgttgttatttctaaatggcgt |
394 |
Q |
| |
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||||||||| |||||||||||| ||||||| |||||||||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
52412346 |
gatgtgatatcggaagaggaagaaatttatagcaagaagaatgaaatgagatctttagcaattacagggattactcattgtttttatttctaaatggcgt |
52412247 |
T |
|
| Q |
395 |
agtttgaatgttcttattgtaattttcagttagagctagttttgtattatcatcaaatcaattgtactatccaatattgtacgcaatgagaataaaaaag |
494 |
Q |
| |
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|||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||| | ||||||||| || | |||||||||||||||| |
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| T |
52412246 |
agtttgaatgttctcattgtaattttcagttagagttagttttgtattagcatcaaatcaattgtattgtccaatattatatgaaatgagaataaaaaag |
52412147 |
T |
|
| Q |
495 |
ttcttctgctatacaattcactcttattcttgactgcaaatttttctgctattcttgaatcactgcataaaacttaactgcaacagaaaaacattgtaaa |
594 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| |||||| ||||||| ||| || |
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| T |
52412146 |
ttattctgctatacaattcattcttattcttgactgcaaatttttctgctgttcttcaatcacttcataaaacttaacagcaacaaaaaaacactgtgaa |
52412047 |
T |
|
| Q |
595 |
gagaaattggtgtgcttttcttcaggttttggt |
627 |
Q |
| |
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|||||||||||||| |||||||||||||||||| |
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| T |
52412046 |
gagaaattggtgtgattttcttcaggttttggt |
52412014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 311 - 538
Target Start/End: Original strand, 40393180 - 40393408
Alignment:
| Q |
311 |
ggaagaggaagtaatttatgccaagaagaa----tgagatgcttagcaactacagggattactcattgttgttatttctaaatggcgtagtttgaatgtt |
406 |
Q |
| |
|
||||||||||| ||||| || ||||||||| |||||||||||||| ||| |||| || |||||||| ||||||||||| | |||||||||||| | |
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| T |
40393180 |
ggaagaggaagaaatttctggcaagaagaacatatgagatgcttagcagctataggggttgctcattgt---tatttctaaattgtgtagtttgaatggt |
40393276 |
T |
|
| Q |
407 |
cttattgtaattttcagttagagctagttttgtattatcatcaaatcaattgtactatccaatattgtacgcaatgagaataaaaaagttcttctgctat |
506 |
Q |
| |
|
|| |||||||||||| |||| | ||||||||||||||||||||||||||||| ||||||||| || || |||||| |||||| ||||||||| || ||| |
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| T |
40393277 |
ctcattgtaattttctgttaaggttagttttgtattatcatcaaatcaattgtcctatccaatgttatatgcaatgggaataacaaagttcttttgatat |
40393376 |
T |
|
| Q |
507 |
acaattcactcttattcttgactgcaaatttt |
538 |
Q |
| |
|
||||| || |||||| |||||||||||||||| |
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|
| T |
40393377 |
acaatccattcttatccttgactgcaaatttt |
40393408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 340 - 444
Target Start/End: Original strand, 40380980 - 40381084
Alignment:
| Q |
340 |
atgagatgcttagcaactacagggattactcattgttgttatttctaaatggcgtagtttgaatgttcttattgtaattttcagttagagctagttttgt |
439 |
Q |
| |
|
||||||||||||||| || |||| || |||||||||||||||| |||||| || ||||||| | ||| ||||||||||||||||| | || |||||| |
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|
| T |
40380980 |
atgagatgcttagcagctgtaggggttgctcattgttgttatttttaaatgaggtggtttgaacgatctcattgtaattttcagttaaggttacttttgt |
40381079 |
T |
|
| Q |
440 |
attat |
444 |
Q |
| |
|
||||| |
|
|
| T |
40381080 |
attat |
40381084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 300 - 619
Target Start/End: Original strand, 7773485 - 7773808
Alignment:
| Q |
300 |
gatgtgatagcggaagaggaagtaatttatgccaagaagaatgagatgcttagcaactacagggattactcattgttgttatttctaaatggcgtagttt |
399 |
Q |
| |
|
|||||||||||||||||||||| |||||| || || |||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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|
| T |
7773485 |
gatgtgatagcggaagaggaagaaatttacgcgaaaaagaattagatgcttagcaactacaatgatcactcattgttgttatttctaaatggcgtagttt |
7773584 |
T |
|
| Q |
400 |
gaatgttcttattgtaattttcagttagagctagttttgtattatcatcaaatcaattgtactatccaatattgtacgcaatgagaataaaaaa----gt |
495 |
Q |
| |
|
||||||||| ||||||||||||| |||||| |||||||||| ||||||||||| || |||||||| ||||||| || | |||| |||||||||| | |
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|
| T |
7773585 |
gaatgttctcattgtaattttcaattagagttagttttgtagtatcatcaaattaaatgtactatgcaatattatatgaaatgggaataaaaaaatttct |
7773684 |
T |
|
| Q |
496 |
tcttctgctatacaattcactcttattcttgactgcaaatttttctgctattcttgaatcactgcataaaacttaactgcaacagaaaaacattgtaaag |
595 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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|
| T |
7773685 |
tcttctactatacaattcattcttattcttgactgcaaatttttctgctattcttgaatcactgcataaaacttaacagcaactaaaaaacattgtaaag |
7773784 |
T |
|
| Q |
596 |
agaaattggtgtgcttttcttcag |
619 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
7773785 |
agaaattggtgtgcttttcttcag |
7773808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 15 - 299
Target Start/End: Original strand, 7772901 - 7773181
Alignment:
| Q |
15 |
cacagaaaaaagaactgccctggttgctgacatgaagagaaggaaactaggtgaagagtagccaagtgtttcaacaaagctaaaggccaaaaacataaga |
114 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| | | |
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|
| T |
7772901 |
cacagcaaaaagaactgccctggttgctgacatgaagaggaggaacctaggtgaagagtagc-aagtgtttcaacaaagttgaaggccaaaaacaccata |
7772999 |
T |
|
| Q |
115 |
cagaaagaagttgcattcgctgagataatcaagaaacagttgcagatataggtgtgaaagagttgcttgtaaagtgctattatcaaagagaacgaaggtg |
214 |
Q |
| |
|
|| |||||||||| |||||||||||||||| | |||| ||||||||||||| ||||||||| |||||||||||||| ||||||||||||| ||||||| |
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|
| T |
7773000 |
caaaaagaagttgaattcgctgagataatccatttacagatgcagatataggtatgaaagagtggcttgtaaagtgcttttatcaaagagaatgaaggtg |
7773099 |
T |
|
| Q |
215 |
gcaaagatggtttattgtgattgagtttaagagcttgaattatggatgcttttgcaatgagaaggacagtgagtgtgaaaggaag |
299 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| | |||| |||||||||||||||| |
|
|
| T |
7773100 |
acaaagatggtttattgtgatttagtttaaaagcttgaattatggatgcttttgcaatg---aagacattgagtgtgaaaggaag |
7773181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 410 - 526
Target Start/End: Complemental strand, 14677054 - 14676938
Alignment:
| Q |
410 |
attgtaattttcagttagagctagttttgtattatcatcaaatcaattgtactatccaatattgtacgcaatgagaataaaaaagttcttctgctataca |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||| |||||| |||||||| || |||||| |
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|
| T |
14677054 |
attgtaattttcagttagagctagttttgtattatcaacaaatcaattgtactatccaatattatatgcaatgggaataataaagttctcttgatataca |
14676955 |
T |
|
| Q |
510 |
attcactcttattcttg |
526 |
Q |
| |
|
| ||| |||||||||| |
|
|
| T |
14676954 |
gtccacacttattcttg |
14676938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 292 - 418
Target Start/End: Complemental strand, 14684836 - 14684711
Alignment:
| Q |
292 |
aaaggaaggatgtgatagcggaagaggaagtaatttatgccaagaaga-atgagatgcttagcaactacagggattactcattgttgttatttctaaatg |
390 |
Q |
| |
|
|||| ||| ||||||||| |||||| ||| ||||| ||| ||||| | |||||||||||||||| || |||| || |||||| ||||| ||||||||| |
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|
| T |
14684836 |
aaagaaagcatgtgatagttgaagagtaagaaatttctgc-aagaacatatgagatgcttagcaattataggggttgctcatttttgttgtttctaaat- |
14684739 |
T |
|
| Q |
391 |
gcgtagtttgaatgttcttattgtaatt |
418 |
Q |
| |
|
| ||| |||||||||||| ||||||||| |
|
|
| T |
14684738 |
gtgtaatttgaatgttctaattgtaatt |
14684711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 7e-26; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 410 - 498
Target Start/End: Original strand, 17667323 - 17667411
Alignment:
| Q |
410 |
attgtaattttcagttagagctagttttgtattatcatcaaatcaattgtactatccaatattgtacgcaatgagaataaaaaagttct |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||| || |||||| |||||| |||||||| |
|
|
| T |
17667323 |
attgtaattttcagttagagctagttttgtaatatcaacaaatcaattatactatccaatattatatgcaatgggaataataaagttct |
17667411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 292 - 418
Target Start/End: Original strand, 17663285 - 17663410
Alignment:
| Q |
292 |
aaaggaaggatgtgatagcggaagaggaagtaatttatgccaagaaga-atgagatgcttagcaactacagggattactcattgttgttatttctaaatg |
390 |
Q |
| |
|
|||| ||| ||||||||| |||||| ||| ||||| ||| ||||| | |||||||||||||||| || |||| || |||||| ||||| ||||||||| |
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|
| T |
17663285 |
aaagaaagcatgtgatagtagaagagtaagaaatttctgc-aagaacatatgagatgcttagcaattataggggttgctcatttttgttgtttctaaat- |
17663382 |
T |
|
| Q |
391 |
gcgtagtttgaatgttcttattgtaatt |
418 |
Q |
| |
|
| ||| |||||||||||| ||||||||| |
|
|
| T |
17663383 |
gtgtaatttgaatgttctaattgtaatt |
17663410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 418
Target Start/End: Complemental strand, 20229203 - 20229126
Alignment:
| Q |
340 |
atgagatgcttagcaactacagggattactcattgttgttatttctaaatggcgtagtttgaatgttcttattgtaatt |
418 |
Q |
| |
|
||||||||||||||||||| |||| || || | |||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
20229203 |
atgagatgcttagcaactataggggttgcttacaattgttatttctaaatgt-gtagtttgaatgttctaattgtaatt |
20229126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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