View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17511_high_4 (Length: 304)
Name: NF17511_high_4
Description: NF17511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17511_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 10 - 289
Target Start/End: Complemental strand, 21932754 - 21932475
Alignment:
| Q |
10 |
aatattaagcataaacagaagatagacaacatgtgattagaagagtaattaaggataattatctttctggttagcatataataaagaaaatggttagagt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21932754 |
aatattaagcataaacagaagatagacaacatgtgattagaagagtaattaaggattattatctttctggttagcatataataaagaaaatggttagagt |
21932655 |
T |
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| Q |
110 |
tcatcttatgttagtcacacaattttaggaggggtttctgtttctcccactagttgaattcaaaggccaccctaagtaaagtttcttttcacattaatag |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21932654 |
tcatcttatgttagtcacacaattttaggaggggtttctgtttctcccactagttgaattcaaaggccaccctaagtaaagtttcttttcacattaatag |
21932555 |
T |
|
| Q |
210 |
ataaatagtctacttttgttatttattggttgagtaattgacgcatagttaggtacaattaaatataatttattcataat |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21932554 |
ataaatagtctacttttgttatttattggttgagtaattgacgcatagttaggtacaattaaatataatttattcataat |
21932475 |
T |
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