View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17511_high_7 (Length: 235)

Name: NF17511_high_7
Description: NF17511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17511_high_7
NF17511_high_7
[»] chr8 (5 HSPs)
chr8 (20-219)||(36378762-36378960)
chr8 (20-219)||(4877813-4878011)
chr8 (40-104)||(7938525-7938589)
chr8 (57-99)||(87725-87767)
chr8 (57-99)||(19803671-19803713)
[»] chr2 (3 HSPs)
chr2 (20-219)||(31487574-31487772)
chr2 (20-155)||(42277055-42277189)
chr2 (20-217)||(39817540-39817737)
[»] chr7 (9 HSPs)
chr7 (20-219)||(19787570-19787768)
chr7 (20-219)||(8732693-8732891)
chr7 (20-209)||(16534335-16534523)
chr7 (20-209)||(16631139-16631327)
chr7 (20-209)||(3933427-3933615)
chr7 (18-219)||(21768386-21768586)
chr7 (20-155)||(42680057-42680191)
chr7 (20-217)||(3052910-3053106)
chr7 (57-99)||(11712579-11712621)
[»] chr4 (3 HSPs)
chr4 (20-219)||(13774970-13775168)
chr4 (20-219)||(42469933-42470131)
chr4 (20-209)||(45162897-45163085)
[»] chr3 (4 HSPs)
chr3 (20-219)||(4531654-4531852)
chr3 (20-209)||(18965418-18965606)
chr3 (57-99)||(5382140-5382182)
chr3 (57-99)||(13721907-13721949)
[»] scaffold0050 (1 HSPs)
scaffold0050 (20-219)||(30049-30247)
[»] chr5 (3 HSPs)
chr5 (20-217)||(37208606-37208802)
chr5 (20-100)||(11851486-11851566)
chr5 (20-217)||(15469719-15469911)
[»] chr1 (8 HSPs)
chr1 (20-217)||(2409186-2409382)
chr1 (20-173)||(10909866-10910018)
chr1 (113-219)||(47398186-47398292)
chr1 (59-202)||(4819593-4819735)
chr1 (59-202)||(4831393-4831535)
chr1 (57-100)||(23202416-23202459)
chr1 (57-99)||(42376597-42376639)
chr1 (58-99)||(2795921-2795962)
[»] scaffold0008 (1 HSPs)
scaffold0008 (20-208)||(89065-89252)
[»] scaffold1361 (1 HSPs)
scaffold1361 (20-155)||(712-846)
[»] scaffold0045 (2 HSPs)
scaffold0045 (20-217)||(64627-64824)
scaffold0045 (20-217)||(71959-72156)
[»] scaffold0015 (1 HSPs)
scaffold0015 (57-99)||(28322-28364)
[»] chr6 (1 HSPs)
chr6 (57-99)||(16776568-16776610)


Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 36378762 - 36378960
Alignment:
20 ataataatgaggaggtaaatacttacgggttagtttccgacgcatttggtcccacgtcttgatcttgctttttccttcacacttacgtctcctttttaag 119  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||    
36378762 ataataatgaggaggtgaatacttacgggttagtttccgacacattttgtcccacgtcttgatcttgctttttccttcacacttacgtctcctttt-aag 36378860  T
120 attttcccaccaaattaaagcatgtttctttagctttactgcaacaacctttactttgtgatcctctggtatctccttgtactcaaatacatgttcaata 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||||||||||||||| ||||||||    
36378861 attttcccaccaaattaaagcatgtttctttagctttactgcaacaatctttaccttgtgctcctctggtatttccttgtactcaaatacacgttcaata 36378960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 4878011 - 4877813
Alignment:
20 ataataatgaggaggtaaatacttacgggttagtttccgacgcatttggtcccacgtcttgatcttgctttttccttcacacttacgtctcctttttaag 119  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||    
4878011 ataataatgaggaggtaaatacttacgggttagtttctgacgcattttgtcccacgtcttgatcttgctttttccttcacgcttacgtctcc-ttttaag 4877913  T
120 attttcccaccaaattaaagcatgtttctttagctttactgcaacaacctttactttgtgatcctctggtatctccttgtactcaaatacatgttcaata 219  Q
    |||||||||||||||||||||||||||||| | |||  | ||||||| ||||||||| || |||||||| | |||||| |||||||||||| ||||||||    
4877912 attttcccaccaaattaaagcatgtttcttcaacttggcagcaacaatctttactttttgctcctctggaacctccttatactcaaatacacgttcaata 4877813  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 7938525 - 7938589
Alignment:
40 acttacgggttagtttccgacgcatttggtcccacgtcttgatcttgctttttccttcacactta 104  Q
    |||||||||||||||||  |||||| | ||||||| ||||||||||  ||||||||||| |||||    
7938525 acttacgggttagtttctaacgcatcttgtcccacatcttgatctttatttttccttcaaactta 7938589  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 87767 - 87725
Alignment:
57 cgacgcatttggtcccacgtcttgatcttgctttttccttcac 99  Q
    ||||||||||  ||||| |||||||||||||||||||||||||    
87767 cgacgcattttctcccaagtcttgatcttgctttttccttcac 87725  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 19803713 - 19803671
Alignment:
57 cgacgcatttggtcccacgtcttgatcttgctttttccttcac 99  Q
    ||||||||||  ||||| |||||||||||||||||||||||||    
19803713 cgacgcattttctcccaagtcttgatcttgctttttccttcac 19803671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 31487772 - 31487574
Alignment:
20 ataataatgaggaggtaaatacttacgggttagtttccgacgcatttggtcccacgtcttgatcttgctttttccttcacacttacgtctcctttttaag 119  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||    
31487772 ataataatgaggaggtgaatacttacgggttagtttccgacacattttgtcccacgtcttgatcttgctttttccttcacacttacgtctcctttt-aag 31487674  T
120 attttcccaccaaattaaagcatgtttctttagctttactgcaacaacctttactttgtgatcctctggtatctccttgtactcaaatacatgttcaata 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||||||||||||||| ||||||||    
31487673 attttcccaccaaattaaagcatgtttctttagctttactgcaacaatctttaccttgtgctcctctggtatttccttgtactcaaatacacgttcaata 31487574  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 42277055 - 42277189
Alignment:
20 ataataatgaggaggtaaatacttacgggttagtttccgacgcatttggtcccacgtcttgatcttgctttttccttcacacttacgtctcctttttaag 119  Q
    ||||||||| ||||||||||||||||||||||||||  |||||||||  ||||||||||||||||||||||||||||||| ||| ||||||| ||||||     
42277055 ataataatggggaggtaaatacttacgggttagtttttgacgcattttctcccacgtcttgatcttgctttttccttcacgcttgcgtctcc-ttttaac 42277153  T
120 attttcccaccaaattaaagcatgtttctttagctt 155  Q
    ||||| |||||||||| ||||  ||||||| |||||    
42277154 atttttccaccaaattgaagcgagtttcttcagctt 42277189  T

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Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 39817540 - 39817737
Alignment:
20 ataataatgaggaggtaaatacttacgggttagtttccgacgcatttggtcccacgtcttgatcttgctttttccttcacacttacgtctcctttttaag 119  Q
    |||||||||||||||||||||||||| |||||||||| ||| |||||  ||||| ||||||||||||||||| ||||||  ||   || ||| ||||||     
39817540 ataataatgaggaggtaaatacttacaggttagtttctgacacattttctcccatgtcttgatcttgcttttaccttcaagctcttgtttcc-ttttaac 39817638  T
120 attttcccaccaaattaaagcatgtttctttagctttactgcaacaacctttactttgtgatcct-ctggtatctccttgtactcaaatacatgttcaa 217  Q
    |||||||||||||||| |||| |||||||| ||||| ||  |||| | ||||||||| || |||| || | | ||||||||||| ||||||| ||||||    
39817639 attttcccaccaaattgaagcgtgtttcttcagcttaacaacaacgatctttactttttgctcctcctagaacctccttgtacttaaatacacgttcaa 39817737  T

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Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 19787768 - 19787570
Alignment:
20 ataataatgaggaggtaaatacttacgggttagtttccgacgcatttggtcccacgtcttgatcttgctttttccttcacacttacgtctcctttttaag 119  Q
    |||||||||||||||||||||||||||| |||||||  |||||||||  |||||||| |||||||||||||||||||||| ||||||||||||||| |||    
19787768 ataataatgaggaggtaaatacttacggcttagtttttgacgcattttctcccacgttttgatcttgctttttccttcacgcttacgtctcctttt-aag 19787670  T
120 attttcccaccaaattaaagcatgtttctttagctttactgcaacaacctttactttgtgatcctctggtatctccttgtactcaaatacatgttcaata 219  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||| || ||||||||||||||||||||||||||  ||||||||    
19787669 attttcccaccaaattaaagcatgtttctttagctttaatgcaacaatctttaccttgtgctcttctggtatctccttgtactcaaatacgcgttcaata 19787570  T

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Target: chr7; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 8732693 - 8732891
Alignment:
20 ataataatgaggaggtaaatacttacgggttagtttccgacgcatttggtcccacgtcttgatcttgctttttccttcacacttacgtctcctttttaag 119  Q
    ||||||| |||||||||||||||||| |||||||||  | | |||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||     
8732693 ataataacgaggaggtaaatacttacaggttagtttgtggcacattttctcccacgtcttgatcttgctttttccttcacacttacgtctcctttt-aac 8732791  T
120 attttcccaccaaattaaagcatgtttctttagctttactgcaacaacctttactttgtgatcctctggtatctccttgtactcaaatacatgttcaata 219  Q
    ||||| ||||||||||||||||||||||||||||||||||  ||||| |||||| ||||| |||||||||||||||||||||||||||||  ||||||||    
8732792 atttttccaccaaattaaagcatgtttctttagctttactataacaatctttaccttgtgctcctctggtatctccttgtactcaaatacgcgttcaata 8732891  T

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Target: chr7; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 16534335 - 16534523
Alignment:
20 ataataatgaggaggtaaatacttacgggttagtttccgacgcatttggtcccacgtcttgatcttgctttttccttcacacttacgtctcctttttaag 119  Q
    |||||||  ||||||||||||||||||| ||| |||  | | |||||  ||||||||||||||||||||||||||||||||||||||||| ||||| |||    
16534335 ataataacaaggaggtaaatacttacggattattttgtggcacattttctcccacgtcttgatcttgctttttccttcacacttacgtcttctttt-aag 16534433  T
120 attttcccaccaaattaaagcatgtttctttagctttactgcaacaacctttactttgtgatcctctggtatctccttgtactcaaatac 209  Q
    |||||||||||||||||||||||||||||||| ||||||| || ||| |||||| ||||| ||||||| |||||||||||||||||||||    
16534434 attttcccaccaaattaaagcatgtttctttatctttactacaccaatctttaccttgtgctcctctgatatctccttgtactcaaatac 16534523  T

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Target: chr7; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 16631327 - 16631139
Alignment:
20 ataataatgaggaggtaaatacttacgggttagtttccgacgcatttggtcccacgtcttgatcttgctttttccttcacacttacgtctcctttttaag 119  Q
    |||||||  ||||||||||||||||||| ||| |||  | | |||||  ||||||||||||||||||||||||||||||||||||||||| ||||| |||    
16631327 ataataacaaggaggtaaatacttacggattattttgtggcacattttctcccacgtcttgatcttgctttttccttcacacttacgtcttctttt-aag 16631229  T
120 attttcccaccaaattaaagcatgtttctttagctttactgcaacaacctttactttgtgatcctctggtatctccttgtactcaaatac 209  Q
    |||||||||||||||||||||||||||||||| ||||||| || ||| |||||| ||||| ||||||| |||||||||||||||||||||    
16631228 attttcccaccaaattaaagcatgtttctttatctttactacaccaatctttaccttgtgctcctctgatatctccttgtactcaaatac 16631139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 3933615 - 3933427
Alignment:
20 ataataatgaggaggtaaatacttacgggttagtttccgacgcatttggtcccacgtcttgatcttgctttttccttcacacttacgtctcctttttaag 119  Q
    ||||||||| ||||||||||||||| ||||||||||  |||||||||  ||||||||||||||||||||||||||||||| ||| ||||||| ||||||     
3933615 ataataatggggaggtaaatacttatgggttagtttttgacgcattttctcccacgtcttgatcttgctttttccttcacgcttgcgtctcc-ttttaac 3933517  T
120 attttcccaccaaattaaagcatgtttctttagctttactgcaacaacctttactttgtgatcctctggtatctccttgtactcaaatac 209  Q
    |||||||||||||||| ||||||||||||| ||||| || ||||| | |||||| || || || ||||| ||||||||||||||||||||    
3933516 attttcccaccaaattgaagcatgtttcttaagcttgacagcaacgatctttaccttttgctcatctggaatctccttgtactcaaatac 3933427  T

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Target: chr7; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 21768386 - 21768586
Alignment:
18 tcataataatgaggaggtaaatacttacgggttagtttccgacgcatttggtcccacgtcttgatcttgctttttccttcacacttacgtctccttttta 117  Q
    |||||||||||||||||| ||||||||||| ||||||||  ||||||||  || ||| |||||||||| ||||| || ||||||||| |  |||||||      
21768386 tcataataatgaggaggtgaatacttacggattagtttctcacgcattttatctcacatcttgatcttacttttcccatcacacttaaggttccttttcc 21768485  T
118 agattttcccaccaaattaaagcatgtttctttagctttactgcaacaacctttactttgtgatcctctggtatctccttgtactcaaatacatgttcaa 217  Q
     ||||||||||||||||||||||||||||||||||||| | | |||||| |||||| ||||| |||| |||||||||||||||||||||||||  |||||    
21768486 -gattttcccaccaaattaaagcatgtttctttagcttaaatacaacaatctttaccttgtgttcctatggtatctccttgtactcaaatacactttcaa 21768584  T
218 ta 219  Q
    ||    
21768585 ta 21768586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 42680057 - 42680191
Alignment:
20 ataataatgaggaggtaaatacttacgggttagtttccgacgcatttggtcccacgtcttgatcttgctttttccttcacacttacgtctcctttttaag 119  Q
    ||||||||| ||||||||||| |||||| |||||||  |||||||||  ||||||||||||||||||||||||||||||| ||| ||| ||| |||||||    
42680057 ataataatggggaggtaaatatttacggattagtttttgacgcattttctcccacgtcttgatcttgctttttccttcacgcttgcgtttcc-ttttaag 42680155  T
120 attttcccaccaaattaaagcatgtttctttagctt 155  Q
    |||||||||||||||| ||||  ||||||| |||||    
42680156 attttcccaccaaattgaagcgagtttcttcagctt 42680191  T

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Target: chr7; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 3053106 - 3052910
Alignment:
20 ataataatgaggaggtaaatacttacgggttagtttccgacgcatttggtcccacgtcttgatcttgctttttccttcacacttacgtctcctttttaag 119  Q
    |||||||| | ||| |||||||||||   |||||||| ||||||||| ||| |||  ||||||||||||||| |||||||||||  || ||||||| |||    
3053106 ataataataacgagataaatacttacatattagtttctgacgcattttgtctcacaacttgatcttgcttttcccttcacacttgtgtttcctttt-aag 3053008  T
120 attttcccaccaaattaaagcatgtttctttagctttactgcaacaacctttactttgtgatcctctggtatctccttgtactcaaatacatgttcaa 217  Q
    |||||||||||||||||||||||||||||| |||||  | ||||| | ||| ||||| || || ||| | | |||||| |||||||| ||| ||||||    
3053007 attttcccaccaaattaaagcatgtttcttcagcttggcagcaacgatcttcactttttgctcttctagaacctccttatactcaaacacacgttcaa 3052910  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 11712621 - 11712579
Alignment:
57 cgacgcatttggtcccacgtcttgatcttgctttttccttcac 99  Q
    ||||||||||  ||||| |||||||||||||||||||||||||    
11712621 cgacgcattttctcccaagtcttgatcttgctttttccttcac 11712579  T

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Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 13775168 - 13774970
Alignment:
20 ataataatgaggaggtaaatacttacgggttagtttccgacgcatttggtcccacgtcttgatcttgctttttccttcacacttacgtctcctttttaag 119  Q
    ||||||| ||||||||||||||||||||||||||||  |  ||||||  ||||||||||||||||||||||||||||||||||||||||| ||||| |||    
13775168 ataataacgaggaggtaaatacttacgggttagtttgtggtgcattttctcccacgtcttgatcttgctttttccttcacacttacgtcttctttt-aag 13775070  T
120 attttcccaccaaattaaagcatgtttctttagctttactgcaacaacctttactttgtgatcctctggtatctccttgtactcaaatacatgttcaata 219  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||  ||||||||    
13775069 attttcccaccaaattaaagcatgtttctttaactttactgcaacaatctttaccttgtgctcctctggtatctccttgtactcaaatacgcgttcaata 13774970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 42469933 - 42470131
Alignment:
20 ataataatgaggaggtaaatacttacgggttagtttccgacgcatttggtcccacgtcttgatcttgctttttccttcacacttacgtctcctttttaag 119  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||    
42469933 ataataatgaggaggtaaatacttacgggttagtttcagacgcattttgtcccacgtcttgatcttgcttttcccttcacacttacgtctcc-ttttaag 42470031  T
120 attttcccaccaaattaaagcatgtttctttagctttactgcaacaacctttactttgtgatcctctggtatctccttgtactcaaatacatgttcaata 219  Q
    |||||||||||||||||||||||||||||| | |||  | ||||||| ||||||||| || |||||||| | |||||| |||||||||||| ||||||||    
42470032 attttcccaccaaattaaagcatgtttcttcaacttggcagcaacaatctttactttttgctcctctggaacctccttatactcaaatacacgttcaata 42470131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 45163085 - 45162897
Alignment:
20 ataataatgaggaggtaaatacttacgggttagtttccgacgcatttggtcccacgtcttgatcttgctttttccttcacacttacgtctcctttttaag 119  Q
    ||||||||||||||||||| |||||||||||||||  |||||||| |  ||||| ||||||||||||||||| ||||||| ||  ||||||| ||||||     
45163085 ataataatgaggaggtaaaaacttacgggttagttctcgacgcatcttctcccatgtcttgatcttgcttttcccttcacgctctcgtctcc-ttttaac 45162987  T
120 attttcccaccaaattaaagcatgtttctttagctttactgcaacaacctttactttgtgatcctctggtatctccttgtactcaaatac 209  Q
    |||||||||||||||| ||||||||||||| ||||| || ||||| | |||||  || || || ||||| ||||||||||||||||||||    
45162986 attttcccaccaaattgaagcatgtttcttcagcttgacagcaacgatctttaacttttgctcttctggaatctccttgtactcaaatac 45162897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 4531852 - 4531654
Alignment:
20 ataataatgaggaggtaaatacttacgggttagtttccgacgcatttggtcccacgtcttgatcttgctttttccttcacacttacgtctcctttttaag 119  Q
    ||||||| ||||||||||||||||||||||||||||  |  ||||||  ||||||||||||||||||||||||||||||||||||||||| ||||| |||    
4531852 ataataacgaggaggtaaatacttacgggttagtttgtggtgcattttctcccacgtcttgatcttgctttttccttcacacttacgtcttctttt-aag 4531754  T
120 attttcccaccaaattaaagcatgtttctttagctttactgcaacaacctttactttgtgatcctctggtatctccttgtactcaaatacatgttcaata 219  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||  ||||||||    
4531753 attttcccaccaaattaaagcatgtttctttaactttactgcaacaatctttaccttgtgctcctctggtatctccttgtactcaaatacgcgttcaata 4531654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 18965418 - 18965606
Alignment:
20 ataataatgaggaggtaaatacttacgggttagtttccgacgcatttggtcccacgtcttgatcttgctttttccttcacacttacgtctcctttttaag 119  Q
    |||||||||||||||||||  ||||||||||||||  |||||||| |  ||||| ||||||||||||||||| ||||||| ||   || ||| ||||| |    
18965418 ataataatgaggaggtaaaatcttacgggttagttctcgacgcatcttttcccatgtcttgatcttgcttttcccttcacgctctagtttcc-ttttatg 18965516  T
120 attttcccaccaaattaaagcatgtttctttagctttactgcaacaacctttactttgtgatcctctggtatctccttgtactcaaatac 209  Q
    |||||||||||||||| |||| ||||| || ||||| || ||||| | ||||||||| || |||||||| | |||||| |||||||||||    
18965517 attttcccaccaaattgaagcgtgtttattcagcttgacagcaacgatctttactttttgctcctctggaacctccttatactcaaatac 18965606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 5382140 - 5382182
Alignment:
57 cgacgcatttggtcccacgtcttgatcttgctttttccttcac 99  Q
    ||||||||||  ||||| |||||||||||||||||||||||||    
5382140 cgacgcattttctcccaagtcttgatcttgctttttccttcac 5382182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 13721907 - 13721949
Alignment:
57 cgacgcatttggtcccacgtcttgatcttgctttttccttcac 99  Q
    ||||||||||  ||||| |||||||||||||||||||||||||    
13721907 cgacgcattttctcccaagtcttgatcttgctttttccttcac 13721949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 30247 - 30049
Alignment:
20 ataataatgaggaggtaaatacttacgggttagtttccgacgcatttggtcccacgtcttgatcttgctttttccttcacacttacgtctcctttttaag 119  Q
    ||||||||||||| | ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||| |||||| ||| |||||||    
30247 ataataatgaggatgcaaatacttacgggttagtttctgacgcattttgtcccacgtcttgatcttgcttttcccttcacagttacgtttcc-ttttaag 30149  T
120 attttcccaccaaattaaagcatgtttctttagctttactgcaacaacctttactttgtgatcctctggtatctccttgtactcaaatacatgttcaata 219  Q
    ||||| |||||||||| |||| |||||||| |||||  | ||||| | ||||||||| || ||||||| || |||||| |||| ||||||| ||||||||    
30148 atttttccaccaaattgaagcgtgtttcttcagcttggcagcaacgatctttactttttgctcctctgctacctccttatacttaaatacacgttcaata 30049  T

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Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 37208802 - 37208606
Alignment:
20 ataataatgaggaggtaaatacttacgggttagtttccgacgcatttggtcccacgtcttgatcttgctttttccttcacacttacgtctcctttttaag 119  Q
    ||||||||||||||||||| |||||||||||| ||  |||||||| |  ||||| ||||||||||||||||| ||||||| ||  ||||||||||| ||     
37208802 ataataatgaggaggtaaaaacttacgggttaattctcgacgcatcttctcccatgtcttgatcttgcttttcccttcacgctctcgtctcctttt-aac 37208704  T
120 attttcccaccaaattaaagcatgtttctttagctttactgcaacaacctttactttgtgatcctctggtatctccttgtactcaaatacatgttcaa 217  Q
    |||||||||||||||| |||| ||||| || ||||| || ||||| | |||||| || || |||||||| ||||||||||||||||||||| ||||||    
37208703 attttcccaccaaattgaagcgtgttttttcagcttgacagcaacgatctttaccttttgctcctctggaatctccttgtactcaaatacacgttcaa 37208606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 11851486 - 11851566
Alignment:
20 ataataatgaggaggtaaatacttacgggttagtttccgacgcatttggtcccacgtcttgatcttgctttttccttcaca 100  Q
    |||||||||||||||||||||||||| |||||||||  |||||||||  ||||||||||||||||||||||||||||||||    
11851486 ataataatgaggaggtaaatacttacaggttagtttttgacgcattttttcccacgtcttgatcttgctttttccttcaca 11851566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 15469911 - 15469719
Alignment:
20 ataataatgaggaggtaaatacttacgggttagtttccgacgcatttggtcccacgtcttgatcttgctttttccttcacacttacgtctcctttttaag 119  Q
    |||||||||||||| |||||| ||| |  ||||||||| || ||| | ||||||||||||||||||    || |||| | |||||||| | ||||| ||     
15469911 ataataatgaggagataaatatttatgtattagtttccaacccatcttgtcccacgtcttgatctt----ttcccttaaaacttacgttttctttt-aat 15469817  T
120 attttcccaccaaattaaagcatgtttctttagctttactgcaacaacctttactttgtgatcctctggtatctccttgtactcaaatacatgttcaa 217  Q
    |||||||||||||| |||||||||||| |||||||| ||  |||||| | |||| || || |||||||| | ||| || |||||||||| ||| ||||    
15469816 attttcccaccaaaataaagcatgtttatttagcttaacatcaacaatcattacattttgctcctctggaacctcattatactcaaatagatggtcaa 15469719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 2409186 - 2409382
Alignment:
20 ataataatgaggaggtaaatacttacgggttagtttccgacgcatttggtcccacgtcttgatcttgctttttccttcacacttacgtctcctttttaag 119  Q
    ||||||||||||||||||| |||||||||||||||  |||||||| |  ||||| ||||||||||||||||| ||||||  ||  ||||||||||| ||     
2409186 ataataatgaggaggtaaaaacttacgggttagttctcgacgcatcttctcccatgtcttgatcttgcttttcccttcatgctctcgtctcctttt-aac 2409284  T
120 attttcccaccaaattaaagcatgtttctttagctttactgcaacaacctttactttgtgatcctctggtatctccttgtactcaaatacatgttcaa 217  Q
    |||||||||||||||| |||| |||||||| ||||| ||  |||| | |||||| || || |||||||| ||||||||||||||||||||| ||||||    
2409285 attttcccaccaaattgaagcctgtttcttcagcttgacaacaacgatctttaccttttgctcctctggaatctccttgtactcaaatacacgttcaa 2409382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 10910018 - 10909866
Alignment:
20 ataataatgaggaggtaaatacttacgggttagtttccgacgcatttggtcccacgtcttgatcttgctttttccttcacacttacgtctcctttttaag 119  Q
    ||||||||| ||||||||||||||||||||||||||  |||||||||  ||||||||||||||||||||||||||||||| ||| | ||||| ||||||     
10910018 ataataatggggaggtaaatacttacgggttagtttttgacgcattttctcccacgtcttgatcttgctttttccttcacgcttgcctctcc-ttttaac 10909920  T
120 attttcccaccaaattaaagcatgtttctttagctttactgcaacaacctttac 173  Q
    |||||||||||||||| ||||  ||||||| |||||  | ||||||| ||||||    
10909919 attttcccaccaaattgaagcgagtttcttcagcttggcagcaacaatctttac 10909866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 113 - 219
Target Start/End: Complemental strand, 47398292 - 47398186
Alignment:
113 ttttaagattttcccaccaaattaaagcatgtttctttagctttactgcaacaacctttactttgtgatcctctggtatctccttgtactcaaatacatg 212  Q
    |||||| ||||||||||||||||||| |||||||||||||||| |||||||||| |||||| || || ||||| ||||||||||| || |||||||||||    
47398292 ttttaatattttcccaccaaattaaaccatgtttctttagcttgactgcaacaatctttaccttttgttcctcaggtatctccttatagtcaaatacatg 47398193  T
213 ttcaata 219  Q
    |||||||    
47398192 ttcaata 47398186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 59 - 202
Target Start/End: Complemental strand, 4819735 - 4819593
Alignment:
59 acgcatttggtcccacgtcttgatcttgctttttccttcacacttacgtctcctttttaagattttcccaccaaattaaagcatgtttctttagctttac 158  Q
    |||||| ||||| ||||||||||||||| |||| |||||| | ||| || ||||||| ||||||||  || ||||||||||| |||||| | ||||| |     
4819735 acgcatatggtctcacgtcttgatcttgattttcccttcagatttatgtttcctttt-aagattttttcatcaaattaaagcgtgtttcctgagcttgag 4819637  T
159 tgcaacaacctttactttgtgatcctctggtatctccttgtact 202  Q
    ||| || | ||||||||| |||||||| |||||||| |||||||    
4819636 tgcgacgatctttactttatgatcctcaggtatctctttgtact 4819593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 59 - 202
Target Start/End: Complemental strand, 4831535 - 4831393
Alignment:
59 acgcatttggtcccacgtcttgatcttgctttttccttcacacttacgtctcctttttaagattttcccaccaaattaaagcatgtttctttagctttac 158  Q
    |||||| ||||| ||||||||||||||| |||| |||||| | ||| || ||||||| ||||||||  || ||||||||||| |||||| | ||||| |     
4831535 acgcatatggtctcacgtcttgatcttgattttcccttcagatttatgtttcctttt-aagattttttcatcaaattaaagcgtgtttcctgagcttgag 4831437  T
159 tgcaacaacctttactttgtgatcctctggtatctccttgtact 202  Q
    ||| || | ||||||||| |||||||| |||||||| |||||||    
4831436 tgcgacgatctttactttatgatcctcaggtatctctttgtact 4831393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 23202459 - 23202416
Alignment:
57 cgacgcatttggtcccacgtcttgatcttgctttttccttcaca 100  Q
    ||||||||||  ||||| ||||||||||||||||||||||||||    
23202459 cgacgcattttctcccaagtcttgatcttgctttttccttcaca 23202416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 42376639 - 42376597
Alignment:
57 cgacgcatttggtcccacgtcttgatcttgctttttccttcac 99  Q
    ||||||||||  ||||| |||||||||||||||||||||||||    
42376639 cgacgcattttctcccaagtcttgatcttgctttttccttcac 42376597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 2795921 - 2795962
Alignment:
58 gacgcatttggtcccacgtcttgatcttgctttttccttcac 99  Q
    |||||||||  ||||| |||||||||||||||||||||||||    
2795921 gacgcattttctcccaagtcttgatcttgctttttccttcac 2795962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 89252 - 89065
Alignment:
20 ataataatgaggaggtaaatacttacgggttagtttccgacgcatttggtcccacgtcttgatcttgctttttccttcacacttacgtctcctttttaag 119  Q
    ||||||||||||||||||| ||||||||| |||||  |||||||| |  ||||| ||||||||||||||||| ||||||| ||  ||||||| ||||||     
89252 ataataatgaggaggtaaaaacttacgggatagttctcgacgcatcttctcccatgtcttgatcttgcttttcccttcacgctctcgtctcc-ttttaac 89154  T
120 attttcccaccaaattaaagcatgtttctttagctttactgcaacaacctttactttgtgatcctctggtatctccttgtactcaaata 208  Q
    |||||||||||||||| |||| |||||||| ||||| || ||||| | |||||| || || |||||||| ||||||||||||| |||||    
89153 attttcccaccaaattgaagcgtgtttcttcagcttgacagcaacgatctttaccttttgctcctctggaatctccttgtactaaaata 89065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1361 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 846 - 712
Alignment:
20 ataataatgaggaggtaaatacttacgggttagtttccgacgcatttggtcccacgtcttgatcttgctttttccttcacacttacgtctcctttttaag 119  Q
    ||||||||| ||||||||||||||||||||||||||  |||||||||  ||||||||||||||||||||||||||||||| ||| ||||||| ||||||     
846 ataataatggggaggtaaatacttacgggttagtttttgacgcattttctcccacgtcttgatcttgctttttccttcacgcttgcgtctcc-ttttaac 748  T
120 attttcccaccaaattaaagcatgtttctttagctt 155  Q
    |||||||||||||||| ||||  ||||||| |||||    
747 attttcccaccaaattgaagcgagtttcttcagctt 712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 64824 - 64627
Alignment:
20 ataataatgaggaggtaaatacttacgggttagtttccgacgcatttggtcccacgtcttgatcttgctttttccttcacacttacgtctcctttt-taa 118  Q
    ||||||||||||||||||||||||||| ||||||||   | ||||||  |||||||||||||||||| |||||||||| |||||  || ||||||| |||    
64824 ataataatgaggaggtaaatacttacgagttagttttttatgcattttctcccacgtcttgatcttgttttttccttctcacttgtgtttccttttataa 64725  T
119 ga-ttttcccaccaaattaaagcatgtttctttagctttactgcaacaacctttactttgtgatcctctggtatctccttgtactcaaatacatgttcaa 217  Q
    || |||| ||||||||||||||| |||||||||| ||| ||  ||||||  |||||||  |  ||||| || |||||||| ||||||||| || ||||||    
64724 gattttttccaccaaattaaagcgtgtttctttaacttgacaacaacaatttttactt--ttctcctccggaatctccttatactcaaatgcacgttcaa 64627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 72156 - 71959
Alignment:
20 ataataatgaggaggtaaatacttacgggttagtttccgacgcatttggtcccacgtcttgatcttgctttttccttcacacttacgtctcctttt-taa 118  Q
    ||||||||||||||||||||||||||| ||||||||   | ||||||  |||||||||||||||||| |||||||||| |||||  || ||||||| |||    
72156 ataataatgaggaggtaaatacttacgagttagttttttatgcattttctcccacgtcttgatcttgttttttccttctcacttgtgtttccttttataa 72057  T
119 ga-ttttcccaccaaattaaagcatgtttctttagctttactgcaacaacctttactttgtgatcctctggtatctccttgtactcaaatacatgttcaa 217  Q
    || |||| ||||||||||||||| |||||||||| ||| ||  ||||||  |||||||  |  ||||| || |||||||| ||||||||| || ||||||    
72056 gattttttccaccaaattaaagcgtgtttctttaacttgacaacaacaatttttactt--ttctcctccggaatctccttatactcaaatgcacgttcaa 71959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 28322 - 28364
Alignment:
57 cgacgcatttggtcccacgtcttgatcttgctttttccttcac 99  Q
    ||||||||||  ||||| |||||||||||||||||||||||||    
28322 cgacgcattttctcccaagtcttgatcttgctttttccttcac 28364  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 16776568 - 16776610
Alignment:
57 cgacgcatttggtcccacgtcttgatcttgctttttccttcac 99  Q
    ||||||||||  ||||| |||||||||||||||||||||||||    
16776568 cgacgcattttctcccaagtcttgatcttgctttttccttcac 16776610  T

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