View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17511_low_1 (Length: 516)

Name: NF17511_low_1
Description: NF17511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17511_low_1
NF17511_low_1
[»] chr1 (14 HSPs)
chr1 (130-507)||(14924984-14925366)
chr1 (124-275)||(11469099-11469252)
chr1 (124-214)||(11469705-11469795)
chr1 (129-214)||(31787501-31787586)
chr1 (129-214)||(31788216-31788301)
chr1 (124-214)||(14924692-14924782)
chr1 (135-201)||(7464023-7464089)
chr1 (135-201)||(11426882-11426948)
chr1 (135-201)||(11427460-11427526)
chr1 (135-201)||(7463444-7463510)
chr1 (135-201)||(37889908-37889974)
chr1 (135-201)||(37890486-37890552)
chr1 (133-201)||(2687680-2687748)
chr1 (65-113)||(43275804-43275852)
[»] scaffold0189 (2 HSPs)
scaffold0189 (125-507)||(12501-12888)
scaffold0189 (124-214)||(12202-12292)
[»] chr4 (13 HSPs)
chr4 (152-500)||(10420963-10421315)
chr4 (124-275)||(6246802-6246955)
chr4 (124-214)||(6247410-6247501)
chr4 (124-214)||(10421521-10421611)
chr4 (124-214)||(15481510-15481600)
chr4 (129-212)||(15481058-15481141)
chr4 (166-212)||(50709719-50709765)
chr4 (140-209)||(53664246-53664315)
chr4 (140-212)||(50710359-50710431)
chr4 (142-201)||(2093865-2093924)
chr4 (160-202)||(13856645-13856687)
chr4 (59-113)||(37306433-37306487)
chr4 (160-212)||(53665028-53665080)
[»] chr3 (6 HSPs)
chr3 (323-507)||(45500838-45501022)
chr3 (1-124)||(52366554-52366677)
chr3 (124-214)||(38337417-38337507)
chr3 (129-212)||(38336967-38337048)
chr3 (131-210)||(44022031-44022110)
chr3 (137-199)||(15450256-15450318)
[»] chr8 (12 HSPs)
chr8 (124-275)||(12350528-12350684)
chr8 (124-214)||(12349985-12350075)
chr8 (129-214)||(43971301-43971386)
chr8 (129-209)||(39257657-39257737)
chr8 (129-214)||(43972026-43972111)
chr8 (124-212)||(43924508-43924596)
chr8 (124-214)||(43924958-43925048)
chr8 (136-212)||(38686333-38686409)
chr8 (160-209)||(38687000-38687049)
chr8 (155-212)||(39258391-39258448)
chr8 (140-209)||(33802318-33802387)
chr8 (160-212)||(33801553-33801605)
[»] chr5 (3 HSPs)
chr5 (133-213)||(4554684-4554764)
chr5 (124-275)||(4555269-4555419)
chr5 (135-201)||(6805910-6805976)
[»] chr2 (14 HSPs)
chr2 (129-214)||(4993627-4993712)
chr2 (129-214)||(4975719-4975804)
chr2 (129-212)||(4976447-4976530)
chr2 (129-212)||(4994354-4994437)
chr2 (165-212)||(42369702-42369749)
chr2 (136-209)||(8536167-8536240)
chr2 (160-212)||(8536828-8536880)
chr2 (124-212)||(37545694-37545782)
chr2 (124-212)||(41519867-41519955)
chr2 (59-118)||(34142236-34142295)
chr2 (130-204)||(42370900-42370974)
chr2 (130-174)||(1271255-1271299)
chr2 (59-111)||(27183781-27183833)
chr2 (59-111)||(27833323-27833375)
[»] chr6 (3 HSPs)
chr6 (129-214)||(27763436-27763521)
chr6 (75-113)||(10067283-10067321)
chr6 (54-118)||(4595766-4595830)
[»] chr7 (6 HSPs)
chr7 (131-212)||(46757449-46757530)
chr7 (59-119)||(29310443-29310503)
chr7 (131-214)||(46759202-46759285)
chr7 (59-113)||(41873463-41873517)
chr7 (131-212)||(27599236-27599317)
chr7 (59-107)||(32377291-32377339)
[»] scaffold0071 (1 HSPs)
scaffold0071 (137-199)||(11873-11935)
[»] scaffold0119 (1 HSPs)
scaffold0119 (130-174)||(29938-29982)


Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 130 - 507
Target Start/End: Complemental strand, 14925366 - 14924984
Alignment:
Q  130 aagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccagannnnnnnnccatatt 229  Q
    ||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||        |||||||    
T  14925366 aagttgtttcccaccatgggaaagctaattttgaccattagataaactagagaacatacttttatcatagacactcaacaccagattttttt-ccatatt 14925268  T
Q  230 ggcccaccacttgcagctgccccaactctctttcctttctctcctttc------tggcgacgcttgcatgcttcaacaattccaggatgaatataagagg 323  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |      ||||||||||||||||||||||||||||||||||||||||||||||    
T  14925267 ggcccaccacttgcagctgccccaactctcttttctttctctccttcccgaatttggcgacgcttgcatgcttcaacaattccaggatgaatataagagg 14925168  T
Q  324 aacagagtgatggcacatgctggaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacaccatcacctgattcacctc 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14925167 aacagagtgatggcacatgctggaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacaccatcacctgattcacctc 14925068  T
Q  424 tattgtctcgtttgcagtattataaagtgactaccaagaatggtgaagatccatggcagattgagtggtgaatctgtgctcctc 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14925067 tattgtctcgtttgcagtattataaagtgactaccaagaatggtgaagatccatggcagattgagtggtgaatctgtgttcctc 14924984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 124 - 275
Target Start/End: Original strand, 11469099 - 11469252
Alignment:
Q  124 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga--nnnnnnn 221  Q
    |||| |||||||||| ||||||||||||| |||||||||| ||||||||||  |||||||||||||||||||||||||||| |||||||||             
T  11469099 aaagggaagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaacatacttttatcatagacactcaacaccagattttttttt 11469198  T
Q  222 nccatattggcccaccacttgcagctgccccaactctctttcctttctctcctt 275  Q
      ||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  11469199 ttcatattggcccaccacttgcagctgtcccaactctcttttctttctctcctt 11469252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 11469795 - 11469705
Alignment:
Q  124 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 214  Q
    |||| ||||||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| | |||||||||    
T  11469795 aaagggaagttgtttttcaccatggaaaaactaattttgaccattagataaagtagagaacatacttttatcatagacattcaacaccaga 11469705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 31787501 - 31787586
Alignment:
Q  129 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 214  Q
    |||||||||| ||||||||| ||| |||||||||| ||||||||||| |||||||||||||||||||||||| ||| |||| ||||    
T  31787501 gaagttgtttcccaccatggaaaagctaattttgaccattagataaagtagagaacatacttttatcatagagactcaacatcaga 31787586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 129 - 214
Target Start/End: Complemental strand, 31788301 - 31788216
Alignment:
Q  129 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 214  Q
    |||||||||| |||||||||||||  ||||||| | ||||||||||| ||||||||||||||||| |||||||||| |||||||||    
T  31788301 gaagttgtttcccaccatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacaccaga 31788216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 14924692 - 14924782
Alignment:
Q  124 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 214  Q
    |||| |||||||||| ||||||||||||| |||||||||| | ||| || || ||||||||||| |||||||||||||||| |||||||||    
T  14924692 aaagggaagttgtttcccaccatgggaaagctaattttgaccgttaaattaaatagagaacatatttttatcatagacactcaacaccaga 14924782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 7464089 - 7464023
Alignment:
Q  135 gttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 201  Q
    |||| |||||||||||||||||||||||| ||| |||| |||||||||||| |  ||||||||||||    
T  7464089 gtttcccaccatgggaaaactaattttgaccatcagattaactagagaacacaactttatcatagac 7464023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 11426882 - 11426948
Alignment:
Q  135 gttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 201  Q
    |||| ||||||||||||| |||||||||| |||||||| ||||| |||||| | |||||||||||||    
T  11426882 gtttcccaccatgggaaagctaattttgaccattagattaactaaagaacacagttttatcatagac 11426948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 11427526 - 11427460
Alignment:
Q  135 gttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 201  Q
    |||||| |||||||||||||||||||||| ||| |||| |||||||||||| |  ||||||||||||    
T  11427526 gttttctaccatgggaaaactaattttgaccatcagattaactagagaacacaactttatcatagac 11427460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 7463444 - 7463510
Alignment:
Q  135 gttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 201  Q
    |||| ||||||||||||| |||||||||| |||||||| || || |||||| | |||||||||||||    
T  7463444 gtttcccaccatgggaaagctaattttgaccattagattaaataaagaacacagttttatcatagac 7463510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 37889908 - 37889974
Alignment:
Q  135 gttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 201  Q
    |||| ||||||||||||| | |||||||| |||||||| ||||| |||||| | |||||||||||||    
T  37889908 gtttcccaccatgggaaagcgaattttgaccattagattaactaaagaacacagttttatcatagac 37889974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 37890552 - 37890486
Alignment:
Q  135 gttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 201  Q
    |||||| |||||||||||||||||||||| ||| |||| ||| |||||||| |  ||||||||||||    
T  37890552 gttttctaccatgggaaaactaattttgaccatcagattaacaagagaacacaactttatcatagac 37890486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 2687748 - 2687680
Alignment:
Q  133 ttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 201  Q
    |||||| |||||||||||||| || ||||||   |||||| |||||  ||||||| |||||||||||||    
T  2687748 ttgtttcccaccatgggaaaattatttttgacagttagattaactaaggaacatagttttatcatagac 2687680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 43275852 - 43275804
Alignment:
Q  65 gtgagacctacatgagttttactcaataaaaaagtgaatgttagagaga 113  Q
    |||||||| |||||| ||| ||||||||||||||||| |||| ||||||    
T  43275852 gtgagacccacatgaatttcactcaataaaaaagtgagtgttggagaga 43275804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 125 - 507
Target Start/End: Complemental strand, 12888 - 12501
Alignment:
Q  125 aagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccagannnnnnnncc 224  Q
    |||||||||||||| |||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||          ||    
T  12888 aagtgaagttgtttcccaccatgggaaagttaattttgaccattagataaactagagaacatacttttatcatagacactcaacaccat-ttttttttcc 12790  T
Q  225 atattggcccaccacttgcagctgccccaactctctttcctttctctcctt------tctggcgacgcttgcatgcttcaacaattccaggatgaatata 318  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||      ||||| |||||||||||||||||||||||||||||||||||||    
T  12789 atattggcccaccacttgcagctgccccaactctcttttctttctctccttcccgaatctggtgacgcttgcatgcttcaacaattccaggatgaatata 12690  T
Q  319 agaggaacagagtgatggcacatgctggaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacaccatcacctgattc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12689 agaggaacagagtgatggcacatgctggaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacaccatcacctgattc 12590  T
Q  419 acctctattgtctcgtttgcagtattataaagtgactaccaagaatggtgaagatccatggcagattgagtggtgaatctgtgctcctc 507  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||    
T  12589 acctctattgtctcgcttgcagtattataaagtgactaccaagaatggtgaagatccatggtagattgagtggtgaatctttgttcctc 12501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 12202 - 12292
Alignment:
Q  124 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 214  Q
    |||| |||||||||| |||||||| ||||| ||||||||| | |||||| || ||||||||||| |||||||||||||||| |||| ||||    
T  12202 aaagagaagttgtttcccaccatgagaaaattaattttgaccgttagattaaatagagaacatatttttatcatagacactcaacatcaga 12292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 152 - 500
Target Start/End: Original strand, 10420963 - 10421315
Alignment:
Q  152 aactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccagannnnnnnnccatattggcccaccacttgcagctgccc 251  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||        |||||||| ||||||||||||||||||||    
T  10420963 aactaattttgaccattagataaactagataacatacttttatcatagacactcaacaccagattttttt-ccatattgacccaccacttgcagctgccc 10421061  T
Q  252 caactctctttcctttctctcctttc------tggcgacgcttgcatgcttcaacaattccaggatgaatataagaggaacagagtgatggcacatgctg 345  Q
    ||||||||||| |||||||||||| |      ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10421062 caactctcttttctttctctccttcccgaatttggtgacgcttgcatgcttcaacaattccaggatgaatataagaggaacagagtgatggcacatgctg 10421161  T
Q  346 gaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacaccatcacctgattcacctctattgtctcgtttgcagtatta 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  10421162 gaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacatcatca-ctgattcacctctattgtctcgtttgcagtatta 10421260  T
Q  446 taaagtgactaccaagaatggtgaagatccatggcagattgagtggtgaatctgt 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10421261 taaagtgactaccaagaatggtgaagatccatggcagattgagtggtgaatctgt 10421315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 124 - 275
Target Start/End: Original strand, 6246802 - 6246955
Alignment:
Q  124 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca--gannnnnnn 221  Q
    |||| ||| |||||| |||||||||||||  ||||||||| ||||||||||  |||||||||||||||||||||||||||| |||| ||               
T  6246802 aaagggaaattgtttcccaccatgggaaagttaattttgaccattagataaggtagagaacatacttttatcatagacactcaacatcattttttttttt 6246901  T
Q  222 nccatattggcccaccacttgcagctgccccaactctctttcctttctctcctt 275  Q
     |||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  6246902 tccatattggcccaccacttgcagctgtcccaactctcttttctttctctcctt 6246955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 6247501 - 6247410
Alignment:
Q  124 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatac-ttttatcatagacacttaacaccaga 214  Q
    |||| ||||||||||  || |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||    
T  6247501 aaagggaagttgtttctcatcatgggaaaactaattttgatcattagataaagtagagaacatactttttatcatagacactcaacaccaga 6247410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 10421611 - 10421521
Alignment:
Q  124 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 214  Q
    |||| |||||||||||||||||||||||| |||||||||| | |||||| || ||||||||||| |||||||||||||||| |||||||||    
T  10421611 aaagggaagttgttttccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagacactcaacaccaga 10421521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 15481600 - 15481510
Alignment:
Q  124 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 214  Q
    |||| |||||||||| |||| ||||||||||||||||||| |  ||||| || ||||||||||| |||||||||||| ||| |||||||||    
T  15481600 aaagggaagttgtttcccacaatgggaaaactaattttgaccggtagattaaatagagaacatatttttatcatagaaactcaacaccaga 15481510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 212
Target Start/End: Original strand, 15481058 - 15481141
Alignment:
Q  129 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 212  Q
    |||||||||| ||  ||||||||| |||||||||| | |||||| || ||||||||||| ||||||||||||| || |||||||    
T  15481058 gaagttgtttcccgtcatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagactctcaacacca 15481141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 50709719 - 50709765
Alignment:
Q  166 attagataaactagagaacatacttttatcatagacacttaacacca 212  Q
    |||||||||| ||||||||||| |||||||||||||||| |||||||    
T  50709719 attagataaagtagagaacatagttttatcatagacactcaacacca 50709765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 53664246 - 53664315
Alignment:
Q  140 ccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaaca 209  Q
    |||||||||||||   ||| |||| ||||||||||| ||||||||||  |||||||||||||||| ||||    
T  53664246 ccaccatgggaaagtaaatattgaccattagataaaatagagaacatggttttatcatagacactcaaca 53664315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 50710431 - 50710359
Alignment:
Q  140 ccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 212  Q
    |||||||||||||   ||| |||| ||||||||||| ||||||||||   ||||||||||||||| |||||||    
T  50710431 ccaccatgggaaagtaaatattgaccattagataaagtagagaacatgaatttatcatagacactcaacacca 50710359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 2093924 - 2093865
Alignment:
Q  142 accatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 201  Q
    |||||||||||  || | ||||||||||||| || || ||||||||||||||||||||||    
T  2093924 accatgggaaagttattattgatcattagatcaaatatagaacatacttttatcatagac 2093865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 13856645 - 13856687
Alignment:
Q  160 ttgatcattagataaactagagaacatacttttatcatagaca 202  Q
    |||| ||||||||||| |||||||||||| |||||||||||||    
T  13856645 ttgaccattagataaagtagagaacatacctttatcatagaca 13856687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 37306487 - 37306433
Alignment:
Q  59 aaagtggtgagacctacatgagttttactcaataaaaaagtgaatgttagagaga 113  Q
    |||||||||||||| |||||||||| || ||||| || ||||| |||||||||||    
T  37306487 aaagtggtgagacccacatgagtttcacccaatataagagtgagtgttagagaga 37306433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 53665080 - 53665028
Alignment:
Q  160 ttgatcattagataaactagagaacatacttttatcatagacacttaacacca 212  Q
    |||| ||||| ||||| ||||||||||  |||||||||||||||| |||||||    
T  53665080 ttgaccattaaataaagtagagaacatggttttatcatagacactcaacacca 53665028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 323 - 507
Target Start/End: Complemental strand, 45501022 - 45500838
Alignment:
Q  323 gaacagagtgatggcacatgctggaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacaccatcacctgattcacct 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45501022 gaacagagtgatggcacatgctggaacttgatttttgagaatttgatcccacatctatgtctccacaacaaacacaaaaacaccatcacctgattcacct 45500923  T
Q  423 ctattgtctcgtttgcagtattataaagtgactaccaagaatggtgaagatccatggcagattgagtggtgaatctgtgctcctc 507  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45500922 ctattatctcgtttgcagtattataaagtggctaccaagaatggtgaagatccatggcagattgagtggtgaatctgtgttcctc 45500838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 52366554 - 52366677
Alignment:
Q  1 gacttctaaattgttaagttgtcattactttctcacacattaagaatgaatttcataaaaagtggtgagacctacatgagttttactcaataaaaaagtg 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  52366554 gacttctaaattgttaagttttcattactttctcacacattaagaatgaatttcatataaagtggtgagacctacatgagttttactcaataaaaaagtg 52366653  T
Q  101 aatgttagagagattgttcataaa 124  Q
    ||||||||||||||||||||||||    
T  52366654 aatgttagagagattgttcataaa 52366677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 38337507 - 38337417
Alignment:
Q  124 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 214  Q
    |||| |||||||||| ||||||||||||| |||||||||| | |||||| || ||||||||||| |||||||||||||||| |||||||||    
T  38337507 aaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagacactcaacaccaga 38337417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 129 - 212
Target Start/End: Original strand, 38336967 - 38337048
Alignment:
Q  129 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 212  Q
    |||||||||| ||||||||||||| |||||||||| | |||||| || ||||||||||| |||||||  ||||||| |||||||    
T  38336967 gaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatc--agacactcaacacca 38337048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 44022110 - 44022031
Alignment:
Q  131 agttgttttccaccatgggaaaactaattttgatcattaga-taaactagagaacatacttttatcatagacacttaacac 210  Q
    |||||||||||||||||||||||  || ||||| ||||||| |||||||| |||||||||||||||||| ||||| |||||    
T  44022110 agttgttttccaccatgggaaaaaaaaatttgaccattagattaaactag-gaacatacttttatcatacacactcaacac 44022031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 15450256 - 15450318
Alignment:
Q  137 tttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatag 199  Q
    ||||||||||||||||  |||| |||| |||||||| || ||||||||||| |||||||||||    
T  15450256 tttccaccatgggaaagttaatcttgaccattagattaagtagagaacatatttttatcatag 15450318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 124 - 275
Target Start/End: Complemental strand, 12350684 - 12350528
Alignment:
Q  124 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga-----nnnn 218  Q
    |||| ||| |||||| ||||||||||||| |||||||||| ||||||||||  |||||||||||||||||||||||||||| |||||||||             
T  12350684 aaagggaaattgtttcccaccatgggaaacctaattttgaccattagataaggtagagaacatacttttatcatagacactcaacaccagattttttttt 12350585  T
Q  219 nnnnccatattggcccaccacttgcagctgccccaactctctttcctttctctcctt 275  Q
        |||||||||||||||||||| ||||| ||||||||||||| ||||||||||||    
T  12350584 ttatccatattggcccaccacttgtagctgtcccaactctcttttctttctctcctt 12350528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 12349985 - 12350075
Alignment:
Q  124 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 214  Q
    |||| |||||||||| ||||||||| |||||||||||| | ||||||||||| || ||||||| ||||||||||||||||| |||||||||    
T  12349985 aaagggaagttgtttcccaccatggaaaaactaattttaaccattagataaagtaaagaacatgcttttatcatagacactcaacaccaga 12350075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 43971301 - 43971386
Alignment:
Q  129 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 214  Q
    |||||||||| ||||||||||||| |||||||||| ||||| ||||| |||||||||||||||||||||||| ||| |||| ||||    
T  43971301 gaagttgtttcccaccatgggaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaacatcaga 43971386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 39257657 - 39257737
Alignment:
Q  129 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaaca 209  Q
    |||||||||| ||||||||||||| |||||||||| ||||| ||||| |||||||||||||||||||||||| ||| ||||    
T  39257657 gaagttgtttcccaccatgggaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaaca 39257737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 129 - 214
Target Start/End: Complemental strand, 43972111 - 43972026
Alignment:
Q  129 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 214  Q
    |||||||||| |||| ||||||||  ||||||| | ||||||||||| ||||||||||||||||| |||||||||| |||||||||    
T  43972111 gaagttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacaccaga 43972026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 124 - 212
Target Start/End: Original strand, 43924508 - 43924596
Alignment:
Q  124 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 212  Q
    |||| |||||||||| ||||||||||||| |||||||||| | |||||| || ||||||||||| |||||||||| ||||| |||||||    
T  43924508 aaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcataaacactcaacacca 43924596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 43925048 - 43924958
Alignment:
Q  124 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 214  Q
    |||| |||||||||| |||||||| ||||  ||||||||| | |||||| || ||||||||||| |||||||||||||||| |||||||||    
T  43925048 aaagggaagttgtttcccaccatgagaaagttaattttgaccgttagattaaatagagaacatatttttatcatagacactcaacaccaga 43924958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 38686333 - 38686409
Alignment:
Q  136 ttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 212  Q
    |||||||||||||||||   ||| |||| ||||||||||| ||||||||||  |||||||||||||||| |||||||    
T  38686333 ttttccaccatgggaaagtaaatattgaccattagataaagtagagaacatggttttatcatagacactcaacacca 38686409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 38687049 - 38687000
Alignment:
Q  160 ttgatcattagataaactagagaacatacttttatcatagacacttaaca 209  Q
    |||||||||||||||| ||||||||||  |||||||||||||||| ||||    
T  38687049 ttgatcattagataaagtagagaacatgattttatcatagacactcaaca 38687000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 39258448 - 39258391
Alignment:
Q  155 taattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 212  Q
    ||||||| | |||||||||||||| |||||||||||||| | |||||||| |||||||    
T  39258448 taattttaaccattagataaactaaagaacatacttttaccgtagacactcaacacca 39258391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 33802387 - 33802318
Alignment:
Q  140 ccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaaca 209  Q
    |||||||||||||   ||| |||| ||||| ||||| ||||||||||  |||||||||||||||| ||||    
T  33802387 ccaccatgggaaagtaaatattgaccattaaataaaatagagaacatggttttatcatagacactcaaca 33802318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 33801553 - 33801605
Alignment:
Q  160 ttgatcattagataaactagagaacatacttttatcatagacacttaacacca 212  Q
    |||| ||||| ||||| ||||||||||  |||||||||||||||| |||||||    
T  33801553 ttgaccattaaataaagtagagaacatggttttatcatagacactcaacacca 33801605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 4554684 - 4554764
Alignment:
Q  133 ttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccag 213  Q
    ||||||||||||||| |||| |||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  4554684 ttgttttccaccatgagaaagctaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccag 4554764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 124 - 275
Target Start/End: Complemental strand, 4555419 - 4555269
Alignment:
Q  124 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccagannnnnnnnc 223  Q
    |||| |||||||||| | ||||||||||| |||||||||| | || |||||| | ||||||||||||||||| |||||||| ||||||| |        |    
T  4555419 aaagggaagttgtttcctaccatgggaaagctaattttgaacgttggataaagtggagaacatacttttatcgtagacactcaacacca-attttttttc 4555321  T
Q  224 catattggcccaccacttgcagctgccccaactctctttcctttctctcctt 275  Q
    |||||||||||||| |||||||||| |||||||||||||  ||||| |||||    
T  4555320 catattggcccaccgcttgcagctgtcccaactctcttttatttctttcctt 4555269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 6805976 - 6805910
Alignment:
Q  135 gttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 201  Q
    |||| |||||||||||||||||||||| | ||| ||||  || | |||||||| |||||||||||||    
T  6805976 gtttcccaccatgggaaaactaattttaaccatcagatttacaaaagaacataattttatcatagac 6805910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 4993627 - 4993712
Alignment:
Q  129 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 214  Q
    |||||||||||||||||||| ||| |||||||||| ||||| ||||| |||||||||||||||||||||||| ||| |||| ||||    
T  4993627 gaagttgttttccaccatggaaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaacatcaga 4993712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 4975719 - 4975804
Alignment:
Q  129 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 214  Q
    |||||||||| ||||||||| ||| |||||||||| ||||| ||||| |||||||||||||||||||||||| ||| |||| ||||    
T  4975719 gaagttgtttcccaccatggaaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaacatcaga 4975804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 129 - 212
Target Start/End: Complemental strand, 4976530 - 4976447
Alignment:
Q  129 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 212  Q
    |||||||||| |||| ||||||||  ||||||| | ||||||||||| ||||||||||||||||| |||||||||| |||||||    
T  4976530 gaagttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacacca 4976447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 129 - 212
Target Start/End: Complemental strand, 4994437 - 4994354
Alignment:
Q  129 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 212  Q
    |||||||||| |||| ||||||||  ||||||| | ||||||||||| ||||||||||||||||| |||||||||| |||||||    
T  4994437 gaagttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacacca 4994354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 42369702 - 42369749
Alignment:
Q  165 cattagataaactagagaacatacttttatcatagacacttaacacca 212  Q
    ||||||||||| ||||||||||| |||||||||||||||| |||||||    
T  42369702 cattagataaagtagagaacataattttatcatagacactcaacacca 42369749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 8536167 - 8536240
Alignment:
Q  136 ttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaaca 209  Q
    |||||||||||||||||   ||| ||||  |||||||||| ||||||||||  |||||||||||||||| ||||    
T  8536167 ttttccaccatgggaaagtaaatattgacgattagataaagtagagaacatgattttatcatagacactcaaca 8536240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 8536880 - 8536828
Alignment:
Q  160 ttgatcattagataaactagagaacatacttttatcatagacacttaacacca 212  Q
    |||| ||||||||||| ||||||||||  |||||||||||||||| |||||||    
T  8536880 ttgaccattagataaagtagagaacatggttttatcatagacactcaacacca 8536828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 212
Target Start/End: Original strand, 37545694 - 37545782
Alignment:
Q  124 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 212  Q
    |||| |||||||||| |||||||||||||  ||| ||||| |||||||| || ||  ||||| | | |||||||||||||| |||||||    
T  37545694 aaagggaagttgtttcccaccatgggaaagttaaatttgaccattagattaagtaatgaacacattcttatcatagacactcaacacca 37545782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 212
Target Start/End: Complemental strand, 41519955 - 41519867
Alignment:
Q  124 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 212  Q
    |||| |||||| ||| |||||||||||||  |  |||||| | ||| ||||| ||||||||||||||||| |||||||||  |||||||    
T  41519955 aaagggaagttttttcccaccatgggaaagttttttttgaccgttaaataaagtagagaacatacttttaccatagacacccaacacca 41519867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 34142236 - 34142295
Alignment:
Q  59 aaagtggtgagacctacatgagttttactcaataaaaaagtgaatgttagagagattgtt 118  Q
    ||||| ||||||| ||||||| ||| |  ||||||||||||||||||| |||||||||||    
T  34142236 aaagtagtgagacatacatgaatttcatccaataaaaaagtgaatgtttgagagattgtt 34142295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 42370974 - 42370900
Alignment:
Q  130 aagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacact 204  Q
    ||||||||| |||||||||||||   ||| |||  ||||||||||| | ||||| ||| ||||||||||||||||    
T  42370974 aagttgtttcccaccatgggaaagtaaatattggccattagataaagtggagaatatagttttatcatagacact 42370900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 1271255 - 1271299
Alignment:
Q  130 aagttgttttccaccatgggaaaactaattttgatcattagataa 174  Q
    |||||||||||||| ||||||||||||||||| | | ||||||||    
T  1271255 aagttgttttccactatgggaaaactaattttaaccgttagataa 1271299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 27183833 - 27183781
Alignment:
Q  59 aaagtggtgagacctacatgagttttactcaataaaaaagtgaatgttagaga 111  Q
    ||||||||||||||||||||||||| | |||| | || ||||| |||||||||    
T  27183833 aaagtggtgagacctacatgagtttcaatcaaaataagagtgagtgttagaga 27183781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 27833375 - 27833323
Alignment:
Q  59 aaagtggtgagacctacatgagttttactcaataaaaaagtgaatgttagaga 111  Q
    ||||||||||||||||||||||||| | |||| | || ||||| |||||||||    
T  27833375 aaagtggtgagacctacatgagtttcaatcaaaataagagtgagtgttagaga 27833323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 27763436 - 27763521
Alignment:
Q  129 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 214  Q
    |||||||||| |||||| ||||||||||||||||| | |||||| || ||||||||||| |||||||| ||||||| |||||||||    
T  27763436 gaagttgtttcccaccaagggaaaactaattttgaccgttagattaaatagagaacatatttttatcaaagacactcaacaccaga 27763521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 113
Target Start/End: Complemental strand, 10067321 - 10067283
Alignment:
Q  75 catgagttttactcaataaaaaagtgaatgttagagaga 113  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  10067321 catgagttttattcaataaaaaagtgattgttagagaga 10067283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 4595830 - 4595766
Alignment:
Q  54 cataaaaagtggtgagacctacatgagttttactcaataaaaaagtgaatgttagagagattgtt 118  Q
    |||||||||||||||||| |||||   ||| ||||||||||| ||||| || |||||||| ||||    
T  4595830 cataaaaagtggtgagacatacattgatttcactcaataaaagagtgagtgctagagagagtgtt 4595766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 131 - 212
Target Start/End: Original strand, 46757449 - 46757530
Alignment:
Q  131 agttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 212  Q
    ||||||||||||||||| ||||   ||| |||| ||||||||||| ||||||||||| |||||||||||||||| |||||||    
T  46757449 agttgttttccaccatgagaaagtaaatattgaccattagataaagtagagaacataattttatcatagacactcaacacca 46757530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 29310503 - 29310443
Alignment:
Q  59 aaagtggtgagacctacatgagttttactcaataaaaaagtgaatgttagagagattgttc 119  Q
    |||||||||||||| |||||||||| || |||||||||||||| ||||||| ||| |||||    
T  29310503 aaagtggtgagacccacatgagtttcacccaataaaaaagtgagtgttagaaagagtgttc 29310443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 131 - 214
Target Start/End: Complemental strand, 46759285 - 46759202
Alignment:
Q  131 agttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 214  Q
    |||||||| ||| ||| | ||| ||||| |||| ||||||||||| |||||||||||||| ||| ||| | |||||||||||||    
T  46759285 agttgtttcccatcatagcaaagctaatcttgaccattagataaagtagagaacatacttctattatacatacttaacaccaga 46759202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 41873517 - 41873463
Alignment:
Q  59 aaagtggtgagacctacatgagttttactcaataaaaaagtgaatgttagagaga 113  Q
    |||||| ||||||  |||||||||| || |||||||||||||| |||||||||||    
T  41873517 aaagtgatgagactcacatgagtttcacccaataaaaaagtgagtgttagagaga 41873463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 212
Target Start/End: Original strand, 27599236 - 27599317
Alignment:
Q  131 agttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 212  Q
    |||||||| |||||||||||||  ||| ||||| |||||||| || ||  ||||| | | |||||||||||||| |||||||    
T  27599236 agttgtttcccaccatgggaaagttaaatttgaccattagattaagtaatgaacacattcttatcatagacactcaacacca 27599317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 32377339 - 32377291
Alignment:
Q  59 aaagtggtgagacctacatgagttttactcaataaaaaagtgaatgtta 107  Q
    |||||||| |||||||||| | |||||  ||||||||||||||||||||    
T  32377339 aaagtggtaagacctacataaattttatccaataaaaaagtgaatgtta 32377291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 11935 - 11873
Alignment:
Q  137 tttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatag 199  Q
    ||||||||||||||||  |||| |||| |||||||| || ||||||||||| |||||||||||    
T  11935 tttccaccatgggaaagttaatcttgaccattagattaagtagagaacatatttttatcatag 11873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 29982 - 29938
Alignment:
Q  130 aagttgttttccaccatgggaaaactaattttgatcattagataa 174  Q
    |||||||||||||| ||||||||||||||||| | | ||||||||    
T  29982 aagttgttttccactatgggaaaactaattttaaccgttagataa 29938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University