View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17511_low_5 (Length: 255)

Name: NF17511_low_5
Description: NF17511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17511_low_5
NF17511_low_5
[»] chr5 (1 HSPs)
chr5 (21-238)||(11851231-11851448)
[»] chr8 (2 HSPs)
chr8 (31-238)||(36378507-36378714)
chr8 (21-238)||(4878049-4878266)
[»] chr2 (3 HSPs)
chr2 (31-238)||(31487820-31488027)
chr2 (130-238)||(39817292-39817400)
chr2 (36-238)||(42276800-42277002)
[»] chr7 (8 HSPs)
chr7 (21-238)||(16534080-16534297)
chr7 (21-238)||(16631365-16631582)
chr7 (20-238)||(8732438-8732656)
chr7 (21-186)||(3053144-3053309)
chr7 (21-183)||(19787806-19787968)
chr7 (49-186)||(21768185-21768322)
chr7 (84-246)||(42679809-42679971)
chr7 (124-238)||(3933756-3933870)
[»] chr4 (2 HSPs)
chr4 (21-238)||(13775206-13775423)
chr4 (21-238)||(42469678-42469895)
[»] chr3 (1 HSPs)
chr3 (21-238)||(4531890-4532107)
[»] scaffold0050 (1 HSPs)
scaffold0050 (22-238)||(30287-30503)
[»] chr1 (3 HSPs)
chr1 (36-238)||(10910071-10910273)
chr1 (21-238)||(4819799-4820015)
chr1 (21-238)||(4831599-4831815)
[»] scaffold1361 (1 HSPs)
scaffold1361 (21-238)||(884-1101)
[»] scaffold0045 (2 HSPs)
scaffold0045 (21-60)||(64862-64901)
scaffold0045 (21-60)||(72194-72233)
[»] chr6 (1 HSPs)
chr6 (174-214)||(20642835-20642875)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 11851448 - 11851231
Alignment:
Q  21 cttcataccaacctctttcccccaccaaaaatcgtatcgattctcaaaatccacatacccaccaacctatttccttattcaaaccccaacataatacatt 120  Q
    |||||||||||||||||| |||||||||||||| |||| |||||||||| ||||  ||||||||||||||||||| ||||||||||||| ||||||||||    
T  11851448 cttcataccaacctcttttccccaccaaaaatcatatcaattctcaaaacccactaacccaccaacctatttcctcattcaaaccccaatataatacatt 11851349  T
Q  121 catagagagaaatacaaagatacctaaatgtttcaagtgtcaagggtatggacacatagccttagactgtgtgaatcgtaaagtattcaccatcgtcaat 220  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  11851348 catagagagaaataccaagacacctaaatgtttcaagtgtcaagggtatgggcacatagccttagattgtgtgaatcgtaaagtattcaccatcgtcaat 11851249  T
Q  221 gaggaaataaacaatatt 238  Q
    ||||| ||||||||||||    
T  11851248 gaggagataaacaatatt 11851231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 31 - 238
Target Start/End: Complemental strand, 36378714 - 36378507
Alignment:
Q  31 acctctttcccccaccaaaaatcgtatcgattctcaaaatccacatacccaccaacctatttccttattcaaaccccaacataatacattcatagagaga 130  Q
    |||| ||||||||||| |||||| ||||||||||||||| ||||  |||||||| | |||||||| ||||||||||||||||||||||||||||||||||    
T  36378714 acctatttcccccaccgaaaatcatatcgattctcaaaaaccactaacccaccagcatatttcctcattcaaaccccaacataatacattcatagagaga 36378615  T
Q  131 aatacaaagatacctaaatgtttcaagtgtcaagggtatggacacatagccttagactgtgtgaatcgtaaagtattcaccatcgtcaatgaggaaataa 230  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  36378614 aataccaagatacctaaatgtttcaagtgtcaagggtatggacacataaccttagattgtgtgaatcgtaaagtattcaccatcgtcaatgaggagataa 36378515  T
Q  231 acaatatt 238  Q
    ||||||||    
T  36378514 acaatatt 36378507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 4878049 - 4878266
Alignment:
Q  21 cttcataccaacctctttcccccaccaaaaatcgtatcgattctcaaaatccacatacccaccaacctatttccttattcaaaccccaacataatacatt 120  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||| || || |  | ||| ||||||||||||| ||| | |||||||| ||| ||| |    
T  4878049 cttcataccaacctctttcccccaccaaaaatcatatcgattatcacaaacccctaatccatcaacctatttcctcatttagaccccaacgtaacacaat 4878148  T
Q  121 catagagagaaatacaaagatacctaaatgtttcaagtgtcaagggtatggacacatagccttagactgtgtgaatcgtaaagtattcaccatcgtcaat 220  Q
    || |||||| |||||||| ||||||||||||||||  |||||||| |||||||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  4878149 caaagagaggaatacaaatatacctaaatgtttcatttgtcaaggttatggacacatagccttagattgtgtgaatcaaaaagtattcaccatcgtcaat 4878248  T
Q  221 gaggaaataaacaatatt 238  Q
    ||||| ||||||||||||    
T  4878249 gaggagataaacaatatt 4878266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 156; Significance: 6e-83; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 31 - 238
Target Start/End: Original strand, 31487820 - 31488027
Alignment:
Q  31 acctctttcccccaccaaaaatcgtatcgattctcaaaatccacatacccaccaacctatttccttattcaaaccccaacataatacattcatagagaga 130  Q
    |||| ||||||||||| |||||| ||||||||||||||| ||||  |||||||| | |||||||| ||||||||||||||||||||||||||||||||||    
T  31487820 acctatttcccccaccgaaaatcatatcgattctcaaaaaccactaacccaccagcatatttcctcattcaaaccccaacataatacattcatagagaga 31487919  T
Q  131 aatacaaagatacctaaatgtttcaagtgtcaagggtatggacacatagccttagactgtgtgaatcgtaaagtattcaccatcgtcaatgaggaaataa 230  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  31487920 aataccaagatacctaaatgtttcaagtgtcaagggtatggacacataaccttagattgtgtgaatcgtaaagtattcaccatcgtcaatgaggagataa 31488019  T
Q  231 acaatatt 238  Q
    ||||||||    
T  31488020 acaatatt 31488027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 39817400 - 39817292
Alignment:
Q  130 aaatacaaagatacctaaatgtttcaagtgtcaagggtatggacacatagccttagactgtgtgaatcgtaaagtattcaccatcgtcaatgaggaaata 229  Q
    |||||| ||||||||||||||||||  |||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||| |||| ||| |||    
T  39817400 aaataccaagatacctaaatgtttcgtgtgtcaagggtatggatacatagccttagattgtgtgaatcgtaaagtagtcaccatcgttaatggggagata 39817301  T
Q  230 aacaatatt 238  Q
    |||||||||    
T  39817300 aacaatatt 39817292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 238
Target Start/End: Complemental strand, 42277002 - 42276800
Alignment:
Q  36 tttcccccaccaaaaatcgtatcgattctcaaaatccacatacccaccaacctatttccttattcaaaccccaacataatacattcatagagagaaatac 135  Q
    |||||||||| |||||||  || || ||||| || ||||  ||||| |||||||||| |  ||| |||||||  ||||| ||| ||| ||||| ||||||    
T  42277002 tttcccccacaaaaaatcaaattgactctcacaaaccactaacccatcaacctattttcacatttaaaccccgtcataaaacagtcacagagataaatac 42276903  T
Q  136 aaagatacctaaatgtttcaagtgtcaagggtatggacacatagccttagactgtgtgaatcgtaaagtattcaccatcgtcaatgaggaaataaacaat 235  Q
     || |||||||||||| ||| |||||||||||| |||||||||||| |||| |||||||||  ||||| | |||||||||| |||   || |||||||||    
T  42276902 caatatacctaaatgtgtcatgtgtcaagggtacggacacatagccatagattgtgtgaattataaagcagtcaccatcgttaatagagagataaacaat 42276803  T
Q  236 att 238  Q
    |||    
T  42276802 att 42276800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 154; Significance: 9e-82; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 16534297 - 16534080
Alignment:
Q  21 cttcataccaacctctttcccccaccaaaaatcgtatcgattctcaaaatccacatacccaccaacctatttccttattcaaaccccaacataatacatt 120  Q
    |||||||||||||| || |   ||||||||||| ||||||||||||||| ||||  ||||||||||||||||||| ||||||||||||| ||||||||||    
T  16534297 cttcataccaacctattccttacaccaaaaatcatatcgattctcaaaaaccactaacccaccaacctatttcctcattcaaaccccaatataatacatt 16534198  T
Q  121 catagagagaaatacaaagatacctaaatgtttcaagtgtcaagggtatggacacatagccttagactgtgtgaatcgtaaagtattcaccatcgtcaat 220  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  16534197 catagagagaaataccaagatacctaaatgtttcaagtgtcaagggtatggacacatagccttagattgtgtgaatcgtaaagtattcaccatcgtcaat 16534098  T
Q  221 gaggaaataaacaatatt 238  Q
    ||||  ||||||| ||||    
T  16534097 gaggggataaacactatt 16534080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 16631365 - 16631582
Alignment:
Q  21 cttcataccaacctctttcccccaccaaaaatcgtatcgattctcaaaatccacatacccaccaacctatttccttattcaaaccccaacataatacatt 120  Q
    |||||||||||||| || |   ||||||||||| ||||||||||||||| ||||  ||||||||||||||||||| ||||||||||||| ||||||||||    
T  16631365 cttcataccaacctattccttacaccaaaaatcatatcgattctcaaaaaccactaacccaccaacctatttcctcattcaaaccccaatataatacatt 16631464  T
Q  121 catagagagaaatacaaagatacctaaatgtttcaagtgtcaagggtatggacacatagccttagactgtgtgaatcgtaaagtattcaccatcgtcaat 220  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  16631465 catagagagaaataccaagatacctaaatgtttcaagtgtcaagggtatggacacatagccttagattgtgtgaatcgtaaagtattcaccatcgtcaat 16631564  T
Q  221 gaggaaataaacaatatt 238  Q
    ||||  ||||||| ||||    
T  16631565 gaggggataaacactatt 16631582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 8732656 - 8732438
Alignment:
Q  20 ccttcataccaacctctttcccccaccaaaaatcgtatcgattctcaaaatccacatacccaccaacctatttccttattcaaaccccaacataatacat 119  Q
    ||||||||||||||| || ||  ||| |||||||  || || ||||| || ||||  | ||| |||||||||| |  ||| |||||||  ||||| |||     
T  8732656 ccttcataccaacctattccctacacaaaaaatcaaattgactctcataaaccactaatccatcaacctattttcacatttaaaccccgtcataaaacaa 8732557  T
Q  120 tcatagagagaaatacaaagatacctaaatgtttcaagtgtcaagggtatggacacatagccttagactgtgtgaatcgtaaagtattcaccatcgtcaa 219  Q
    ||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8732556 tcacagagataaataccaagatacctaaatgtttcaagtgtcaagggtatggacacatagccttagattgtgtgaatcgtaaagtattcaccatcgtcaa 8732457  T
Q  220 tgaggaaataaacaatatt 238  Q
    |||||  ||||||| ||||    
T  8732456 tgaggggataaacactatt 8732438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 3053144 - 3053309
Alignment:
Q  21 cttcataccaacctctttcccccaccaaaaatcgtatcgattctcaaaatccacatacccaccaacctatttccttattcaaaccccaacataatacatt 120  Q
    ||||||||||| || ||||| |||||||||||| ||| |||||||| ||||||| ||||||||||||||||| || |||||| ||||||||||||||| |    
T  3053144 cttcataccaaactttttcctccaccaaaaatcatatagattctcacaatccacctacccaccaacctattttctcattcaacccccaacataatacaat 3053243  T
Q  121 catagagagaaatacaaagatacctaaatgtttcaagtgtcaagggtatggacacatagccttaga 186  Q
    ||||||||||||||| |||| ||| |||||||||  ||||||||||||||| ||||||||||||||    
T  3053244 catagagagaaataccaagacacccaaatgtttcttgtgtcaagggtatggtcacatagccttaga 3053309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 183
Target Start/End: Original strand, 19787806 - 19787968
Alignment:
Q  21 cttcataccaacctctttcccccaccaaaaatcgtatcgattctcaaaatccacatacccaccaacctatttccttattcaaaccccaacataatacatt 120  Q
    ||||||||||||||||||||  |||||||||||  || |||||||| || ||||  | ||| |||||||||| || ||| |||||||||||||| ||| |    
T  19787806 cttcataccaacctctttcctgcaccaaaaatcacattgattctcataaaccactaagccatcaacctattttctcatttaaaccccaacataacacaat 19787905  T
Q  121 catagagagaaatacaaagatacctaaatgtttcaagtgtcaagggtatggacacatagcctt 183  Q
     | |||||||||| ||| ||||||||||||||||| |||| ||||||||||||||||||||||    
T  19787906 aaaagagagaaatgcaaggatacctaaatgtttcatgtgttaagggtatggacacatagcctt 19787968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 49 - 186
Target Start/End: Complemental strand, 21768322 - 21768185
Alignment:
Q  49 aaatcgtatcgattctcaaaatccacatacccaccaacctatttccttattcaaaccccaacataatacattcatagagagaaatacaaagatacctaaa 148  Q
    ||||| ||| |||||||| |||||||  |||||||||||||||| || |||||||||||||||||||||| |||||||||||||||  |||| ||| |||    
T  21768322 aaatcatatagattctcacaatccaccaacccaccaacctattttctcattcaaaccccaacataatacaatcatagagagaaatatcaagacacccaaa 21768223  T
Q  149 tgtttcaagtgtcaagggtatggacacatagccttaga 186  Q
    ||||||  ||||||||||||||| | ||||||||||||    
T  21768222 tgtttctggtgtcaagggtatggccgcatagccttaga 21768185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 84 - 246
Target Start/End: Complemental strand, 42679971 - 42679809
Alignment:
Q  84 aacctatttccttattcaaaccccaacataatacattcatagagagaaatacaaagatacctaaatgtttcaagtgtcaagggtatggacacatagcctt 183  Q
    ||||||||| |  ||| |||||||  ||||| ||| ||| ||||| |||||| || |||||||||||||||| |||||||||||| |||||||||||| |    
T  42679971 aacctattttcacatttaaaccccgtcataaaacaatcacagagataaataccaatatacctaaatgtttcatgtgtcaagggtacggacacatagccat 42679872  T
Q  184 agactgtgtgaatcgtaaagtattcaccatcgtcaatgaggaaataaacaatattcttggaga 246  Q
    ||| |||||||||  ||||| | ||||||| || |||  ||| |||||||||||| |||||||    
T  42679871 agattgtgtgaattataaagcagtcaccattgttaatagggagataaacaatatttttggaga 42679809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 124 - 238
Target Start/End: Original strand, 3933756 - 3933870
Alignment:
Q  124 agagagaaatacaaagatacctaaatgtttcaagtgtcaagggtatggacacatagccttagactgtgtgaatcgtaaagtattcaccatcgtcaatgag 223  Q
    ||||| |||||| || |||||||||||| ||| |||||||||||| |||||||||||| |||| |||||||||  ||||| | |||||||||| |||  |    
T  3933756 agagataaataccaatatacctaaatgtgtcatgtgtcaagggtacggacacatagccatagattgtgtgaattataaagcagtcaccatcgttaatagg 3933855  T
Q  224 gaaataaacaatatt 238  Q
    || ||||||||||||    
T  3933856 gagataaacaatatt 3933870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 13775206 - 13775423
Alignment:
Q  21 cttcataccaacctctttcccccaccaaaaatcgtatcgattctcaaaatccacatacccaccaacctatttccttattcaaaccccaacataatacatt 120  Q
    |||||||||||||| || ||  ||||||||||| ||||||||||||||| ||||  ||||||||||||||||||| ||||||||||||| ||||||||||    
T  13775206 cttcataccaacctattccctacaccaaaaatcatatcgattctcaaaaaccactaacccaccaacctatttcctcattcaaaccccaatataatacatt 13775305  T
Q  121 catagagagaaatacaaagatacctaaatgtttcaagtgtcaagggtatggacacatagccttagactgtgtgaatcgtaaagtattcaccatcgtcaat 220  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13775306 catagagagaaataccaagatacctaaatgtttcaagtgtcaagagtatggacacatagccttagattgtgtgaatcgtaaagtattcaccatcgtcaat 13775405  T
Q  221 gaggaaataaacaatatt 238  Q
    ||||  ||||||| ||||    
T  13775406 gaggggataaacactatt 13775423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 42469895 - 42469678
Alignment:
Q  21 cttcataccaacctctttcccccaccaaaaatcgtatcgattctcaaaatccacatacccaccaacctatttccttattcaaaccccaacataatacatt 120  Q
    |||||||||||||||||| ||||||||||| || ||| |||||||| || ||||  ||||| |||||||||| || ||| | |||||||| ||| ||| |    
T  42469895 cttcataccaacctcttttccccaccaaaattcatattgattctcataaaccactaacccatcaacctattttctcattaagaccccaacctaacacaat 42469796  T
Q  121 catagagagaaatacaaagatacctaaatgtttcaagtgtcaagggtatggacacatagccttagactgtgtgaatcgtaaagtattcaccatcgtcaat 220  Q
    || ||||| |||  | || |||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||| ||||||| ||||||| || |||    
T  42469795 caaagagaaaaaatccaatatacctaaatgtttcatgtgtcaagggtatggacacatagccttagattgtgtaaatcataaagtagtcaccattgttaat 42469696  T
Q  221 gaggaaataaacaatatt 238  Q
    | ||| | ||||||||||    
T  42469695 ggggagacaaacaatatt 42469678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 4531890 - 4532107
Alignment:
Q  21 cttcataccaacctctttcccccaccaaaaatcgtatcgattctcaaaatccacatacccaccaacctatttccttattcaaaccccaacataatacatt 120  Q
    |||||||||||||| || ||  ||||||||||| ||||||||||||||| ||||  ||||||||||||||||||| ||||||||||||| ||||||||||    
T  4531890 cttcataccaacctattccctacaccaaaaatcatatcgattctcaaaaaccactaacccaccaacctatttcctcattcaaaccccaatataatacatt 4531989  T
Q  121 catagagagaaatacaaagatacctaaatgtttcaagtgtcaagggtatggacacatagccttagactgtgtgaatcgtaaagtattcaccatcgtcaat 220  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4531990 catagagagaaataccaagatacctaaatgtttcaagtgtcaagagtatggacacatagccttagattgtgtgaatcgtaaagtattcaccatcgtcaat 4532089  T
Q  221 gaggaaataaacaatatt 238  Q
    ||||  ||||||| ||||    
T  4532090 gaggggataaacactatt 4532107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 22 - 238
Target Start/End: Original strand, 30287 - 30503
Alignment:
Q  22 ttcataccaacctctttcccccaccaaaaatcgtatcgattctcaaaatccacatacccaccaacctatttccttattcaaaccccaacataatacattc 121  Q
    ||||||||||||||||||| ||||||||||||  || |||||| | || ||||  ||||| |||||||||| || ||| |||||||||||||| ||| ||    
T  30287 ttcataccaacctctttcctccaccaaaaatcaaattgattcttataaaccactaacccatcaacctattttctcatttaaaccccaacataacacactc 30386  T
Q  122 atagagagaaatacaaagatacctaaatgtttcaagtgtcaagggtatggacacatagccttagactgtgtgaatcgtaaagtattcaccatcgtcaatg 221  Q
    | |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||| ||| ||||||  |||||| |||||||||| ||||    
T  30387 aaagagagaaataccaagatacctaaatgtttcatgtgtcaagggtatggacacatagtcttagattgtatgaatcacaaagtagtcaccatcgttaatg 30486  T
Q  222 aggaaataaacaatatt 238  Q
     ||| ||||| ||||||    
T  30487 gggagataaataatatt 30503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 238
Target Start/End: Original strand, 10910071 - 10910273
Alignment:
Q  36 tttcccccaccaaaaatcgtatcgattctcaaaatccacatacccaccaacctatttccttattcaaaccccaacataatacattcatagagagaaatac 135  Q
    |||||||||| |||||||  || || ||||| || ||||  | ||| |||||||||| |  ||| |||||||  ||||| ||| ||| ||||| ||||||    
T  10910071 tttcccccacaaaaaatcaaattgactctcataaaccactaatccatcaacctattttcacatttaaaccccgtcataaaacaatcacagagataaatac 10910170  T
Q  136 aaagatacctaaatgtttcaagtgtcaagggtatggacacatagccttagactgtgtgaatcgtaaagtattcaccatcgtcaatgaggaaataaacaat 235  Q
     || |||||||||||| ||| |||||||||||| |||||||||||| |||| |||||||||  ||||| | |||||||||| |||  ||| |||||||||    
T  10910171 caatatacctaaatgtgtcatgtgtcaagggtacggacacatagccatagattgtgtgaattataaagcagtcaccatcgttaatagggagataaacaat 10910270  T
Q  236 att 238  Q
    |||    
T  10910271 att 10910273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 4819799 - 4820015
Alignment:
Q  21 cttcataccaacctctttcccccaccaaaaatcgtatcgattctcaaaatccacatacccaccaacctatttccttattcaaaccccaacataatacatt 120  Q
    |||||||||||||||||||| | |||| | ||| ||| |||||||| || |||| || ||| ||| ||||||||| ||| |||||||||||||| ||| |    
T  4819799 cttcataccaacctctttcctctaccagatatcatattgattctcacaaaccacctagccatcaatctatttcctcatttaaaccccaacataacacaat 4819898  T
Q  121 catagagagaaatacaaagatacctaaatgtttcaagtgtcaagggtatggacacatagccttagactgtgtgaatcgtaaagtattcaccatcgtcaat 220  Q
    || ||||  ||||| ||||| ||  ||||||||| | ||||||||||||||  |||| | |||||| ||| |||||   |||||| |||| ||||| |||    
T  4819899 caaagaggtaaatataaagacactcaaatgtttc-attgtcaagggtatgggtacatcgtcttagattgtctgaataccaaagtaatcactatcgttaat 4819997  T
Q  221 gaggaaataaacaatatt 238  Q
    | ||| ||||||||||||    
T  4819998 ggggagataaacaatatt 4820015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 4831599 - 4831815
Alignment:
Q  21 cttcataccaacctctttcccccaccaaaaatcgtatcgattctcaaaatccacatacccaccaacctatttccttattcaaaccccaacataatacatt 120  Q
    |||||||||||||||||||| | |||| | ||| ||| |||||||| || |||| || ||| ||| ||||||||| ||| |||||||||||||| ||| |    
T  4831599 cttcataccaacctctttcctctaccagatatcatattgattctcacaaaccacctagccatcaatctatttcctcatttaaaccccaacataacacaat 4831698  T
Q  121 catagagagaaatacaaagatacctaaatgtttcaagtgtcaagggtatggacacatagccttagactgtgtgaatcgtaaagtattcaccatcgtcaat 220  Q
    || ||||  ||||| ||||| ||  ||||||||| | ||||||||||||||  |||| | |||||| ||| |||||   |||||| |||| ||||| |||    
T  4831699 caaagaggtaaatataaagacactcaaatgtttc-attgtcaagggtatgggtacatcgtcttagattgtctgaataccaaagtaatcactatcgttaat 4831797  T
Q  221 gaggaaataaacaatatt 238  Q
    | ||| ||||||||||||    
T  4831798 ggggagataaacaatatt 4831815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1361 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 884 - 1101
Alignment:
Q  21 cttcataccaacctctttcccccaccaaaaatcgtatcgattctcaaaatccacatacccaccaacctatttccttattcaaaccccaacataatacatt 120  Q
    ||||||||| || | |||||||||| |||||||  || || ||||| || ||||  | ||| |||||||||| |  ||| |||||||  ||||| ||| |    
T  884 cttcataccgacatttttcccccacaaaaaatcaaattgactctcacaaaccactaatccatcaacctattttcacatttaaaccccgtcataaaacaat 983  T
Q  121 catagagagaaatacaaagatacctaaatgtttcaagtgtcaagggtatggacacatagccttagactgtgtgaatcgtaaagtattcaccatcgtcaat 220  Q
    || ||||| |||||| || |||||||||||| ||| |||||||||||| |||||||||||| |||| |||||||||  ||||| | |||||||||| |||    
T  984 cacagagataaataccaatatacctaaatgtgtcatgtgtcaagggtacggacacatagccatagattgtgtgaattataaagcagtcaccatcgttaat 1083  T
Q  221 gaggaaataaacaatatt 238  Q
       || ||||||||||||    
T  1084 agagagataaacaatatt 1101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 64862 - 64901
Alignment:
Q  21 cttcataccaacctctttcccccaccaaaaatcgtatcga 60  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  64862 cttcataccaacctctttcccccaccaaaaatcatatcga 64901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 72194 - 72233
Alignment:
Q  21 cttcataccaacctctttcccccaccaaaaatcgtatcga 60  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  72194 cttcataccaacctctttcccccaccaaaaatcatatcga 72233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 20642835 - 20642875
Alignment:
Q  174 acatagccttagactgtgtgaatcgtaaagtattcaccatc 214  Q
    ||||||||||||| |||||||||||||||||| ||||||||    
T  20642835 acatagccttagattgtgtgaatcgtaaagtagtcaccatc 20642875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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