View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17512_high_1 (Length: 782)
Name: NF17512_high_1
Description: NF17512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17512_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 657; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 10 - 769
Target Start/End: Original strand, 16988707 - 16989466
Alignment:
| Q |
10 |
gtccaagaatatccagatgtaagcagggtatcaagcaacggtgtttggactaatttatcgaccgagcctgaacaagtcagaaatgatgttcagaagacaa |
109 |
Q |
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| T |
16988707 |
gtccaacaagatccagatgtaagcagagtttcaagcaatggtgtttggactaatttatcgaccgagcctgaacaagtcagaaatgatgttcagaagacaa |
16988806 |
T |
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| Q |
110 |
ttcctcggcatgagaatgggaaatcggagaagttggaacctgcttttacttcatcttctggtggttcaggaagtagtcttggaaaaacttgttctttatc |
209 |
Q |
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| T |
16988807 |
ttcctcggcatgagaatgggaaatcggagaagttggaacctgcttttacttcatcttctggtggttcgggaagtagtcttggaaaaacttgttctttatc |
16988906 |
T |
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| Q |
210 |
gacaagaagtcatgacaaaaagaggaaagtgatggatgttgaagattcagtcgaacaaagcgaggtaaaactgcgccctctatctttttaccttcataat |
309 |
Q |
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| T |
16988907 |
tacaagaagtcatgacaaaaagaggaaagtgatggatgttgaagattcagtcgaacaaagcgaggtaaaactgcgccctctatctttttaccttcataat |
16989006 |
T |
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| Q |
310 |
tagatgtttttcattaattgatacactgagttatgattttattgtttgtattaataggatacagaacttaaatcttccgtgaggaaaaaggcatctcagc |
409 |
Q |
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| T |
16989007 |
tagatgtttttcattaattgatacactgagttatgattttatggtttgtgttaataggatacagaacttaaatcaggcgtgaggaaaaagacgtctcagc |
16989106 |
T |
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| Q |
410 |
ggtcagggtcggctcgtaggaaccgcgctgctgaagtgcataatctttcagaaagggtaagggtttgacactactctagatagactaaagttttctaaaa |
509 |
Q |
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| T |
16989107 |
gatcagggtcggctcgtaggaaccgcgctgctgaagtgcataatctttcagaaagggtaagggtttgacacttctctagatagactgaagttttctaaaa |
16989206 |
T |
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| Q |
510 |
ttttgcgcttacaagaagtgttattggtttattgatgcagaggcgaagagataggattaatgagaagatgaaagcattgcaacaactcatacctcacagt |
609 |
Q |
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| T |
16989207 |
ttttgcgcttacaagaagtgttattgatttattgatgcagaggcgaagagataggattaatgagaagatgaaagcattgcaacaactcatacctcacagt |
16989306 |
T |
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| Q |
610 |
agtaaggtttgtcatcaaaccatgnnnnnnnnnataggaaattgctagtggttaattttttaaggcaacaaataatttgttagtatcaggtattgaaccc |
709 |
Q |
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| T |
16989307 |
agtaaggtttgtcatcaaaccatgtttttttttataggaaattgctagtggttaattttttaaggcaacaaagaatttgttagtatcaggtattgaaccc |
16989406 |
T |
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| Q |
710 |
tgaatacgcgtcaatataatcttgtatagaaaacgatcgattttccattctgtatactga |
769 |
Q |
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| T |
16989407 |
tgaatacgcgtcaatataatcttgtatagaaaacgatcgattttccattctgtatactga |
16989466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 547 - 603
Target Start/End: Original strand, 31295595 - 31295651
Alignment:
| Q |
547 |
cagaggcgaagagataggattaatgagaagatgaaagcattgcaacaactcatacct |
603 |
Q |
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| T |
31295595 |
cagaggcgaagagacaggataaatgagaagatgtgtgcattgcaagaactcatacct |
31295651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 547 - 603
Target Start/End: Original strand, 37935221 - 37935277
Alignment:
| Q |
547 |
cagaggcgaagagataggattaatgagaagatgaaagcattgcaacaactcatacct |
603 |
Q |
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| T |
37935221 |
cagaggcgaagagacaggataaatgagaagatgcgtgcattgcaagaactcatacct |
37935277 |
T |
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