View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17512_high_10 (Length: 328)
Name: NF17512_high_10
Description: NF17512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17512_high_10 |
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| [»] scaffold0631 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 5932982 - 5932740
Alignment:
| Q |
18 |
taaggaaggtgcgcgtgtggtggttggtgctccaggagtgggaatgaatctgactctcttcttttgcatgattcgtcgttgatatgatggtgtttgcagc |
117 |
Q |
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| T |
5932982 |
taaggaaggtgcgtgtgtggtggttggtgctccaggagtgggaatgaatctgactctcttcttttgtgtgattcgtcgttgatatgatggtgtttgcagt |
5932883 |
T |
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| Q |
118 |
tgttcaaggaattagacatgtttatgggattcttcatgattttgtgtcctgttttaatattttgttatttttcaataatgtgtcagtttgtatttggaaa |
217 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5932882 |
tgtttgaggaattagacatgtttatgagattcttcatgattttgtgtcctgttttaatattttgttattttccaataatgtgtcagtttgtatttggaaa |
5932783 |
T |
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| Q |
218 |
agttgttggcttttaattttgttttagtaagctaagtctaatg |
260 |
Q |
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| T |
5932782 |
agttgctggcttttaattttgttttagtaagctaagtctaatg |
5932740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 5931607 - 5931539
Alignment:
| Q |
258 |
atgataatgtatatgcaacatttaaatctaatctctttccatcttcatgtatacttctgtgctccttct |
326 |
Q |
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| T |
5931607 |
atgataatgtatatgcaacatttaaatctaatctctttccatcttcatgtatacttctgggctacttct |
5931539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 19253596 - 19253518
Alignment:
| Q |
22 |
gaaggtgcgcgtgtggtggttggtgctccaggagtgggaatgaatctgactctcttcttttgcatgattcgtcgttgat |
100 |
Q |
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| T |
19253596 |
gaaggtgcacgtgttgtggttggtgctcctagagtgggactgaatttgactctattcttttgcataattcgtcgatgat |
19253518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 18197020 - 18197262
Alignment:
| Q |
18 |
taaggaaggtgcgcgtgtggtggttggtgctccaggagtgggaatgaatctgactctcttcttttgcatgattcgtcgttgatatgatggtgtttgcagc |
117 |
Q |
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| T |
18197020 |
taaggaatgtgcatgtgtggtggttggtgctccagaagtgggaatgaatctgactctcttcttttgcgtgattcctcgttgatatgatggtgtttgcaac |
18197119 |
T |
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| Q |
118 |
tgttcaaggaattagacatgtttatgggattcttcatgattttgtgtcctgttttaatattttgttatttttcaataatgtgtcagtttgtatttggaaa |
217 |
Q |
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| T |
18197120 |
tgttcgaggaattagacatgtttatgggattcttcatgattttgtgtcctgttttaatattttgttatttttcaataatttgtcagtttgtatttggaaa |
18197219 |
T |
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| Q |
218 |
agttgttggcttttaattttgttttagtaagctaagtctaatg |
260 |
Q |
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| T |
18197220 |
agttgttggcttttaattttgttttagtaagttaagtctaatg |
18197262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0631 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0631
Description:
Target: scaffold0631; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 6919 - 6859
Alignment:
| Q |
18 |
taaggaaggtgcgcgtgtggtggttggtgctccaggagtgggaatgaatctgactctcttc |
78 |
Q |
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| T |
6919 |
taaggaaggtgctcgtgtggtggtaggggctccagctgtggggatgaatttgactctcttc |
6859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 15385943 - 15385883
Alignment:
| Q |
18 |
taaggaaggtgcgcgtgtggtggttggtgctccaggagtgggaatgaatctgactctcttc |
78 |
Q |
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| T |
15385943 |
taaggaaggtgctcgtgtggtggtaggggctccagctgtggggatgaatttgactctcttc |
15385883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 24325161 - 24325221
Alignment:
| Q |
18 |
taaggaaggtgcgcgtgtggtggttggtgctccaggagtgggaatgaatctgactctcttc |
78 |
Q |
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| T |
24325161 |
taaggaaggtgctcgtgtggtggtaggggttccagctgtggggatgaatttgactctcttc |
24325221 |
T |
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