View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17512_high_12 (Length: 311)
Name: NF17512_high_12
Description: NF17512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17512_high_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 296
Target Start/End: Original strand, 34016017 - 34016300
Alignment:
| Q |
13 |
aatataaatctaattacaaggtagctgcagattataattcatccatttttaaattaaagaaaatgcagatgtgtgtagtcattgtctgtgtacatgcata |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
34016017 |
aatataaatctaattacaaggtagctgcagattataattcatccatttttaaattaaagaaaatgcagatgtgtgttgtcattgtctgtgtatatgcata |
34016116 |
T |
|
| Q |
113 |
tatgtgagtgtgtattatataatatgccaaattaataattaatggtgaaagaagaatccaagtatgctcatcccaccatctattaaatggcaatttgagt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34016117 |
tatgtgagtgtgtattatataatatgccaaattaataattaatggtgaaagaagaatccaagtatgctcatcccaccatctattaaatggcaatttgagt |
34016216 |
T |
|
| Q |
213 |
gtgttcaaacaataagactatttgaccgtgttgcaaatagttcactctgtgggtacgcttagatgagttactcatatattgaat |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34016217 |
gtgttcaaacaataagactatttgaccgtgttgcaaatagttcactctgtgggtacgcttagatgagttactcatatattgaat |
34016300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 34005878 - 34006123
Alignment:
| Q |
13 |
aatataaatctaattacaaggtagctgcagattataattcatccatttttaaattaaagaaaatgcagatgtgtgtagtcattgtctgtgtacatgcata |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
34005878 |
aatataaatctaattacaaggtagctgcagattataattcatccatttttaaattaaagaaaatgcagatgtgtgttgtcattgtctgtgtaaatgcata |
34005977 |
T |
|
| Q |
113 |
tatgtgagtgtgtattatataatatgccaaattaataattaatggtgaaagaagaatccaagtatgctcatcccaccatctattaaatggcaatttgagt |
212 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34005978 |
tatgtaagtgtgtattatataatatgccaaattaataattaatggtgaaagaagaatccaagtatgctcatcccaccatctattaaatggcaatttgagt |
34006077 |
T |
|
| Q |
213 |
gtgttcaaacaataagactatttgaccgtgttgcaaatagttcact |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34006078 |
gtgttcaaacaataagactatttgaccgtgttgcaaatagttcact |
34006123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 296
Target Start/End: Original strand, 33153374 - 33153657
Alignment:
| Q |
13 |
aatataaatctaattacaaggtagctgcagattataattcatccatttttaaattaaagaaaatgcagatgtgtgtagtcattgtctgtgtacatgcata |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
33153374 |
aatataaatctaattacaaggtagctgcagattataattcatccatttttaaattaaagaaaatgcagatgtgtgttgtcattgtctgtgtatatgcata |
33153473 |
T |
|
| Q |
113 |
tatgtgagtgtgtattatataatatgccaaattaataattaatggtgaaagaagaatccaagtatgctcatcccaccatctattaaatggcaatttgagt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33153474 |
tatgtgagtgtgtattatataatatgccaaattaataattaatggtgaaagaagaatccaagtatgctcatcccaccatctattaaatggcaatttgagt |
33153573 |
T |
|
| Q |
213 |
gtgttcaaacaataagactatttgaccgtgttgcaaatagttcactctgtgggtacgcttagatgagttactcatatattgaat |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33153574 |
gtgttcaaacaataagactatttgaccgtgttgcaaatagttcactctgtgggtacgcttagatgagttactcatatattgaat |
33153657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University