View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17512_high_13 (Length: 291)
Name: NF17512_high_13
Description: NF17512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17512_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 280
Target Start/End: Complemental strand, 10113939 - 10113675
Alignment:
| Q |
16 |
caatcatctgttttaatgatctaacataaaatgaagctttcttaaaaatgttacatgacaacaattaaccctgaagatttcttaaacaaatttagatgaa |
115 |
Q |
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| T |
10113939 |
caatcatctgttttaatgatctaacataaaatgaagctttcttaaaaatgttacatgacaacaattaaccctgaagatttcttaaacaaatttagatgaa |
10113840 |
T |
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| Q |
116 |
tatttgtcaaaaaggttatatgacctgtctttttggatgaaacaaaataatattctaacaaccagtggcggatcttgctcatgagcagcgaaaatttaaa |
215 |
Q |
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| T |
10113839 |
tatttgtcaaaaaggttatatgacctgtctttttggatgaaacagaataatattctaacaaccagtggcggatcttgctcatgagcagcgaaaatttaaa |
10113740 |
T |
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| Q |
216 |
aatggattaaccaaatctcagtattatacatacataaaatatttaaatatttatatagtgttcat |
280 |
Q |
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| T |
10113739 |
aatggattaaccaaatctcagtattatacatacataaaatatttaaatatttatatagtgttcat |
10113675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 280
Target Start/End: Complemental strand, 10251042 - 10250778
Alignment:
| Q |
16 |
caatcatctgttttaatgatctaacataaaatgaagctttcttaaaaatgttacatgacaacaattaaccctgaagatttcttaaacaaatttagatgaa |
115 |
Q |
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| T |
10251042 |
caatcatctgttttaatgatctaacataaaatgaagctttcttaaaaatgttacatgacaacaattaaccctgaagatttcttaaacaaatttagatgaa |
10250943 |
T |
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| Q |
116 |
tatttgtcaaaaaggttatatgacctgtctttttggatgaaacaaaataatattctaacaaccagtggcggatcttgctcatgagcagcgaaaatttaaa |
215 |
Q |
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| T |
10250942 |
tatttgtcaaaaaggttatatgacctgtctttttggatgaaacagaataatattctaacaaccagtggcggatcttgctcatgagcagcgaaaatttaaa |
10250843 |
T |
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| Q |
216 |
aatggattaaccaaatctcagtattatacatacataaaatatttaaatatttatatagtgttcat |
280 |
Q |
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| T |
10250842 |
aatggattaaccaaatctcagtattatacatacataaaatatttaaatatttatatagtgttcat |
10250778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 143 - 280
Target Start/End: Complemental strand, 10014217 - 10014080
Alignment:
| Q |
143 |
tctttttggatgaaacaaaataatattctaacaaccagtggcggatcttgctcatgagcagcgaaaatttaaaaatggattaaccaaatctcagtattat |
242 |
Q |
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| T |
10014217 |
tctttttggatgaaacagaataatattctaacaaccagtggcggatcttgctcatgagcagcgaaaatttaaaaatggattaaccaaatctcagtattat |
10014118 |
T |
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| Q |
243 |
acatacataaaatatttaaatatttatatagtgttcat |
280 |
Q |
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| T |
10014117 |
acatacataaaatatttaaatatttatatagtgttcat |
10014080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 16014520 - 16014794
Alignment:
| Q |
16 |
caatcatctgttttaatgatctaacataaaatgaagctttcttaaaaatgttacatgacaacaattaaccctgaagatttcttaaacaaatttagatgaa |
115 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16014520 |
caatcatctgttttaatgatctaacataaaaggaagctttcttaaaaatgttatatgacaacaattaaccctgaagatttcttaaacaaatttagatgaa |
16014619 |
T |
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| Q |
116 |
tatttgtcaaaaaggttatatgacctgtctttttggatgaaacaaaataatattctaacaaccagtggcggatcttgctca----------tgagcagcg |
205 |
Q |
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| T |
16014620 |
tttttgtcaaaaaggttatatgacctgtctttttcgatcaaacagaataatattctaacaaccagtggcggatcttgctcaaatattagggtgagcagcg |
16014719 |
T |
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| Q |
206 |
aaaatttaaaaatggattaaccaaatctcagtattatacatacataaaatatttaaatatttatatagtgttcat |
280 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
16014720 |
aaaacttaaaaatggattaaccaaatctctgtattatacatacataaaatatttaaatatttatgtagtgttcat |
16014794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 97 - 280
Target Start/End: Complemental strand, 21403149 - 21402954
Alignment:
| Q |
97 |
ttaaacaaatttagatgaatatttgtcaaaaaggttatatgacctgtctttttggatgaaac-aaaataatattctaacaaccagtggcggatcttgctc |
195 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||| |||||||||||||||| |
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| T |
21403149 |
ttaaacaagtttagatgaatatttgtcaaaaaggttatatgacctgtctttttggatcaaacggaattaatattctaacaaccggtggcggatcttgctc |
21403050 |
T |
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| Q |
196 |
a-----------tgagcagcgaaaatttaaaaatggattaaccaaatctcagtattatacatacataaaatatttaaatatttatatagtgttcat |
280 |
Q |
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| |||| || ||||| ||||||||||||||||||||| || ||||||||||||||||| |||||||||| ||| ||| | |||||| |
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| T |
21403049 |
aaaatattaggttgaggagggaaaacttaaaaatggattaaccaaatatctgtattatacatacataacatatttaaatttttttatggagttcat |
21402954 |
T |
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