View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17512_high_16 (Length: 275)
Name: NF17512_high_16
Description: NF17512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17512_high_16 |
 | |
|
| [»] scaffold0405 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 19964011 - 19963778
Alignment:
| Q |
19 |
atgaaaaatttataaacttacccggctagtccacaaataaaaggacaaaagaaaacctttaaataaggcctttattttgccaaggaaccctgcaatggta |
118 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19964011 |
atgaaaaatttataaacttacccggcgagtccacaaataaaaggacaaaagaaaatcttcaaataaggcctttattttgccaaggaactctgcaatggta |
19963912 |
T |
|
| Q |
119 |
catcgtcattgttaaattcaaaaattgatggagnnnnnnnnntaagttttaaatttcaggcataatgattaatgagagctattatctattccatatcttg |
218 |
Q |
| |
|
|| |||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19963911 |
caccgtcattgttaaattcaaaaattggaggagaaaaaacaataagttttaaatttcaggca-------taatgagagctattatctattccatatcttg |
19963819 |
T |
|
| Q |
219 |
aattaagaaatgcaaagagaagacctcaactaagttctaat |
259 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
19963818 |
atttaagaaatgcaaagagaagacctcgactaagttctaat |
19963778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 23 - 256
Target Start/End: Original strand, 19910065 - 19910290
Alignment:
| Q |
23 |
aaaatttataaacttacccggctagtccacaaataaaaggacaaaagaaaacctttaaataaggcctttattttgccaaggaaccctgcaatggtacatc |
122 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||| ||||||| |||| |
|
|
| T |
19910065 |
aaaatttataaacttacccggccagtccacaaataaaaggacaaaa-aaaacctttaaataaggcctttattttgccaagaaatccttcaatggttcatc |
19910163 |
T |
|
| Q |
123 |
gtcattgttaaattcaaaaattgatggagnnnnnnnnntaagttttaaatttcaggcataatgattaatgagagctattatctattccatatcttgaatt |
222 |
Q |
| |
|
||||| | |||||||||||||| | || |||||||||||| ||||| | |||||||| |||||||||||||||| |||||| || |
|
|
| T |
19910164 |
ttcattctcaaattcaaaaattggagaagaaaaaacaataagttttaaatctcaggta-------taatgagacctattatctattccatgtcttgattt |
19910256 |
T |
|
| Q |
223 |
aagaaatgcaaagagaagacctcaactaagttct |
256 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
19910257 |
aagaaatgcatagagaagacctcaactaagttct |
19910290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 23 - 259
Target Start/End: Original strand, 1661275 - 1661504
Alignment:
| Q |
23 |
aaaatttataaacttacccggctagtccacaaataaaaggacaaaagaaaacctttaaataaggcctttattttgccaaggaaccctgcaatggtacatc |
122 |
Q |
| |
|
|||||||| |||||||| || | |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||| | |
|
|
| T |
1661275 |
aaaatttaaaaacttactcgaccagtccacaaataaaagcacaaaagaaaaccttcaaataaggcctttattttgccaaggaagcctgtaatggtacacc |
1661374 |
T |
|
| Q |
123 |
gtcattgttaaattcaaaaattgatggagnnnnnnnnntaagttttaaatttcaggcataatgattaatgagagctattatctattccatatcttgaatt |
222 |
Q |
| |
|
| |||||||||||||||||| | |||| ||||||||||||| |||||| ||||| ||||||||||||||||||| |||||| || |
|
|
| T |
1661375 |
ataattgttaaattcaaaaatgggaggagaaaaaacaataagttttaaattacaggca-------taatgggagctattatctattccatgtcttgattt |
1661467 |
T |
|
| Q |
223 |
aagaaatgcaaagagaagacctcaactaagttctaat |
259 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||| |
|
|
| T |
1661468 |
aagaaatgcactgagaagacctcaactaagttttaat |
1661504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 7881453 - 7881563
Alignment:
| Q |
19 |
atgaaaaatttataaacttacccggctagtccacaaataaaaggacaaaagaaaacctttaaataaggcctttattttgccaaggaaccctgcaatggta |
118 |
Q |
| |
|
|||||||||||||||| |||| ||| | ||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7881453 |
atgaaaaatttataaatgtacctggccaatccacgaataagaggacaaaagaaaaccttcaaataaggcctttattttgccaaggaaccctgcaatggta |
7881552 |
T |
|
| Q |
119 |
catcgtcattg |
129 |
Q |
| |
|
||||||||||| |
|
|
| T |
7881553 |
catcgtcattg |
7881563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 144
Target Start/End: Complemental strand, 25490385 - 25490311
Alignment:
| Q |
70 |
aaaacctttaaataaggcctttattttgccaaggaaccctgcaatggtacatcgtcattgttaaattcaaaaatt |
144 |
Q |
| |
|
|||| ||| ||||||| |||||||||| ||||||||||| ||||||||||| ||||||| ||||| ||||||| |
|
|
| T |
25490385 |
aaaaacttcaaataagacctttatttttccaaggaacccgctaatggtacatcctcattgtcaaatttaaaaatt |
25490311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 257
Target Start/End: Complemental strand, 25490274 - 25490206
Alignment:
| Q |
188 |
taatgagagctattatctattccatatcttgaattaagaaatgcaaagagaagacctcaactaagttcta |
257 |
Q |
| |
|
|||||||||| |||| ||||| ||| |||||| |||| || |||| |||||||||||||||| ||||||| |
|
|
| T |
25490274 |
taatgagagccattacctatttcatgtcttgatttaa-aattgcatagagaagacctcaacttagttcta |
25490206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0405 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0405
Description:
Target: scaffold0405; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 145
Target Start/End: Original strand, 13182 - 13246
Alignment:
| Q |
81 |
ataaggcctttattttgccaaggaaccctgcaatggtacatcgtcattgttaaattcaaaaattg |
145 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| || || || ||||||| | ||||| |||||| |
|
|
| T |
13182 |
ataaggccttagttttgccaaggaaccctgcaaaggaacttcctcattgtcagattcagaaattg |
13246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University