View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17512_high_17 (Length: 271)
Name: NF17512_high_17
Description: NF17512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17512_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 47469375 - 47469195
Alignment:
| Q |
1 |
gcttaagaagttggttgaagagggaaagattaagtacataggattatctgaggctagtactgatacaatcagaagggcacatgctgttcatcccattact |
100 |
Q |
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| T |
47469375 |
gcttaagaagttggttgaagagggaaagattaagtacataggattatctgaggctagtactgatacaatcagaagggcacatgctgttcatcccattact |
47469276 |
T |
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| Q |
101 |
gctgttcaaatggaatggtctctttggactcgtgaaattgagccagatatcattcccctttgcaggtacctaactggttga |
181 |
Q |
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| T |
47469275 |
gctgttcaaatggaatggtctctttggactcgtgaaattgagccagatatcattcccctttgcaggtacctaactgattga |
47469195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 47468729 - 47468652
Alignment:
| Q |
175 |
tggttgactttaattaatgatcctcctaactaagctaacaaatcttaactaacttgcaattaatactaaacaacttgt |
252 |
Q |
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| T |
47468729 |
tggttgactttaattaatgatcctcctaactaagctaacaaatcttaactaacttgcaattaatactaaacaacttgt |
47468652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 142
Target Start/End: Complemental strand, 47473706 - 47473566
Alignment:
| Q |
2 |
cttaagaagttggttgaagagggaaagattaagtacataggattatctgaggctagtactgatacaatcagaagggcacatgctgttcatcccattactg |
101 |
Q |
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| T |
47473706 |
cttaagaaactggtggaagagggaaaagttaagtatattggactatctgaagccagccctgatacaataaggagagcgcatgctgttcatcccatcactg |
47473607 |
T |
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| Q |
102 |
ctgttcaaatggaatggtctctttggactcgtgaaattgag |
142 |
Q |
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| T |
47473606 |
ctgtacaaatagagtggtctctttggactcgcgacattgag |
47473566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 142
Target Start/End: Complemental strand, 47486421 - 47486281
Alignment:
| Q |
2 |
cttaagaagttggttgaagagggaaagattaagtacataggattatctgaggctagtactgatacaatcagaagggcacatgctgttcatcccattactg |
101 |
Q |
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|||| ||||||||| ||||| ||||| | ||||| ||||| ||||||| ||||| | |||||||| || || || || | |||||||||| || | |
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| T |
47486421 |
cttatgaagttggtggaagaaggaaaagtgaagtatatagggctatctgaagctagcccagatacaataaggagagcgcacaccattcatcccatcacag |
47486322 |
T |
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| Q |
102 |
ctgttcaaatggaatggtctctttggactcgtgaaattgag |
142 |
Q |
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| T |
47486321 |
ctgtacaaatggagtggtctctttggactcgtgacattgag |
47486281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 142
Target Start/End: Complemental strand, 47477004 - 47476864
Alignment:
| Q |
2 |
cttaagaagttggttgaagagggaaagattaagtacataggattatctgaggctagtactgatacaatcagaagggcacatgctgttcatcccattactg |
101 |
Q |
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|||||||| |||| ||||||||||| |||| || || ||| ||||||| || || | |||||||| || || ||||||||||||||||| || || | |
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| T |
47477004 |
cttaagaaactggtggaagagggaaaagttaaatatattggactatctgaagccagccccgatacaataaggagagcacatgctgttcatcctatcacag |
47476905 |
T |
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| Q |
102 |
ctgttcaaatggaatggtctctttggactcgtgaaattgag |
142 |
Q |
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|| | ||||| || |||||||| |||||||| || |||||| |
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| T |
47476904 |
ctttacaaatagagtggtctctctggactcgcgacattgag |
47476864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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