View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17512_high_18 (Length: 271)
Name: NF17512_high_18
Description: NF17512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17512_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 54607694 - 54607804
Alignment:
| Q |
19 |
atataactaatattggacccacattccttattttgataacttgggttacgattaatcacacgtccctcttccatgtaataataattaatatttgtgtaaa |
118 |
Q |
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| T |
54607694 |
atataactaatattgggcccacattccttattttgataacttgggttacgattaatcacacgtccctcttccatgtaataataattaatatttgtgtaaa |
54607793 |
T |
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| Q |
119 |
attaagaggaa |
129 |
Q |
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| T |
54607794 |
attaagaggaa |
54607804 |
T |
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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 218
Target Start/End: Original strand, 54607821 - 54607859
Alignment:
| Q |
180 |
atttgattatatattttgtataatgcatattatgatatc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
54607821 |
atttgattatatattttgtataatgcatattatgatatc |
54607859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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