View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17512_high_23 (Length: 238)
Name: NF17512_high_23
Description: NF17512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17512_high_23 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 36949636 - 36949856
Alignment:
| Q |
18 |
gagacagaatcaaagacaactgttttagcaggaacatatggatatctatcacctgaagctgctacaagaggaaaggctagtagagaatctgatgtataca |
117 |
Q |
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| T |
36949636 |
gagacagaatcaaagacaactgttttagcaggaacatatggatatctatcacctgaagctgctacaagaggaaaggctagtagagaatctgatgtataca |
36949735 |
T |
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| Q |
118 |
gttttggagttgttgctttggaaatagcttgtggtagaaaggcaattgaaccaagtcttagtgaagaacatatttacttggtggattgggtttgcgaact |
217 |
Q |
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| T |
36949736 |
gttttggagttgttgctttggaaatagcttgtggtagaaaggcaattgaaccaagtcttagtgaagaacatatttacttggtggattgggtttgcgaact |
36949835 |
T |
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| Q |
218 |
atatggtaatggtgatcttct |
238 |
Q |
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| T |
36949836 |
atatggtaatggtgatcttct |
36949856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 36959770 - 36959990
Alignment:
| Q |
18 |
gagacagaatcaaagacaactgttttagcaggaacatatggatatctatcacctgaagctgctacaagaggaaaggctagtagagaatctgatgtataca |
117 |
Q |
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| T |
36959770 |
gagacagaatcaaagacaactgttttagcaggaacatatggatatctatcacctgaagctgctacaagaggaaaggctagtagagaatctgatgtataca |
36959869 |
T |
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| Q |
118 |
gttttggagttgttgctttggaaatagcttgtggtagaaaggcaattgaaccaagtcttagtgaagaacatatttacttggtggattgggtttgcgaact |
217 |
Q |
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| T |
36959870 |
gttttggagttgttgctttggaaatagcttgtggtagaaaggcaattgaaccaagtcttagtgaagaacatatttacttggtggattgggtttgcgaact |
36959969 |
T |
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| Q |
218 |
atatggtaatggtgatcttct |
238 |
Q |
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| T |
36959970 |
atatggtaatggtgatcttct |
36959990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 36941652 - 36941572
Alignment:
| Q |
77 |
tgctacaagaggaaaggctagtagagaatctgatgtatacagttttggagttgttgctttggaaatagcttgtggtagaaa |
157 |
Q |
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| T |
36941652 |
tgctaccacaggaagggccagtaaagaaaccgatgtgtatagttttggaattgttgctttagagatagcttgtggaagaaa |
36941572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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