View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17512_high_24 (Length: 236)
Name: NF17512_high_24
Description: NF17512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17512_high_24 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 48091856 - 48092078
Alignment:
| Q |
1 |
ataccggattccagtttgtaagtgaaattcttatcttagtgtatttttgaattgacattgtgattttgtcaaactcacgcacgggtctaattcaaacata |
100 |
Q |
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| T |
48091856 |
ataccggaatccagtttgtaagtgaaattcttatcttagtgtatttttgaattgacattgtgattttgtcaaactcacgcacgggtctaattcaaacata |
48091955 |
T |
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| Q |
101 |
cattaaatatatacattttaatttgat---catgacatgatctactatgtattacaattaattgcagataaacataattagaatatttaggcaattggag |
197 |
Q |
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| T |
48091956 |
catt-------------ttaatttgatattcatgacatgatcta---tgtattacaattaattgcagataaacataattagaatatttaggcaattggag |
48092039 |
T |
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| Q |
198 |
tattttcaacaataccagcagagagtgagtggtcttatt |
236 |
Q |
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| T |
48092040 |
tattttcaacaataccagcagagagtgagtggtcttatt |
48092078 |
T |
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