View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17512_high_26 (Length: 234)
Name: NF17512_high_26
Description: NF17512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17512_high_26 |
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| [»] scaffold0194 (1 HSPs) |
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Alignment Details
Target: scaffold0194 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: scaffold0194
Description:
Target: scaffold0194; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 88 - 228
Target Start/End: Complemental strand, 29643 - 29503
Alignment:
| Q |
88 |
tgaaagagtgttgacattttaacatttggtgatcgaaaatacgtaactctcaaacctcaatggtcacataaatgcagtgactattcataagccacgaaac |
187 |
Q |
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| T |
29643 |
tgaaagagtgttgacattttaacatttggtgatcgaaaatacgtaactctcaaacctcaatggtcacataaatgcagtgactattcataagccacgaaac |
29544 |
T |
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| Q |
188 |
atcgactcgaatcgaattttcaactataaagagagagacta |
228 |
Q |
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| T |
29543 |
atcgactcgaatcgaattttcaactataaagagagagacta |
29503 |
T |
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