View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17512_high_7 (Length: 379)

Name: NF17512_high_7
Description: NF17512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17512_high_7
NF17512_high_7
[»] chr4 (20 HSPs)
chr4 (202-371)||(16582555-16582724)
chr4 (5-200)||(16582335-16582531)
chr4 (1-178)||(16431348-16431526)
chr4 (1-200)||(30859310-30859510)
chr4 (1-200)||(30190940-30191140)
chr4 (1-200)||(55227559-55227759)
chr4 (1-200)||(4235260-4235460)
chr4 (7-201)||(54823615-54823810)
chr4 (1-205)||(13685950-13686155)
chr4 (2-189)||(18878132-18878320)
chr4 (4-192)||(20527775-20527964)
chr4 (1-198)||(14263988-14264186)
chr4 (1-206)||(37061042-37061248)
chr4 (2-149)||(27087441-27087589)
chr4 (2-73)||(27066340-27066411)
chr4 (2-147)||(28860789-28860935)
chr4 (5-42)||(33480498-33480535)
chr4 (5-41)||(4227904-4227940)
chr4 (2-58)||(12355314-12355370)
chr4 (1-41)||(54886603-54886643)
[»] chr1 (21 HSPs)
chr1 (1-200)||(41117136-41117336)
chr1 (1-200)||(30033529-30033729)
chr1 (2-200)||(21701467-21701666)
chr1 (2-200)||(52147703-52147902)
chr1 (4-290)||(24427492-24427784)
chr1 (1-205)||(24065155-24065360)
chr1 (15-200)||(40490021-40490207)
chr1 (202-362)||(41116952-41117112)
chr1 (45-200)||(9361714-9361870)
chr1 (2-173)||(49372292-49372464)
chr1 (1-200)||(24083322-24083524)
chr1 (1-149)||(5185265-5185414)
chr1 (1-189)||(29115369-29115558)
chr1 (1-92)||(38488864-38488955)
chr1 (2-59)||(30981315-30981372)
chr1 (2-75)||(34696097-34696170)
chr1 (5-49)||(2002534-2002578)
chr1 (1-61)||(6507904-6507964)
chr1 (5-41)||(28385218-28385254)
chr1 (5-73)||(47726338-47726406)
chr1 (5-73)||(47747644-47747712)
[»] chr7 (23 HSPs)
chr7 (1-200)||(15633176-15633376)
chr7 (1-199)||(13014956-13015155)
chr7 (1-201)||(32480161-32480362)
chr7 (4-191)||(24226203-24226391)
chr7 (2-200)||(41601380-41601579)
chr7 (1-157)||(3896455-3896612)
chr7 (1-200)||(8118792-8118992)
chr7 (202-362)||(13015180-13015340)
chr7 (202-362)||(15632993-15633152)
chr7 (1-157)||(47081645-47081802)
chr7 (15-200)||(4645959-4646145)
chr7 (1-201)||(17238666-17238867)
chr7 (1-201)||(26016474-26016675)
chr7 (1-153)||(30502500-30502653)
chr7 (35-192)||(3205158-3205316)
chr7 (1-200)||(27458085-27458285)
chr7 (1-158)||(33611026-33611184)
chr7 (1-73)||(27810611-27810683)
chr7 (1-158)||(48770101-48770259)
chr7 (2-140)||(44675351-44675490)
chr7 (5-184)||(11343055-11343235)
chr7 (1-40)||(29961968-29962007)
chr7 (233-311)||(3205379-3205457)
[»] chr5 (18 HSPs)
chr5 (1-200)||(2157770-2157970)
chr5 (2-200)||(19741524-19741723)
chr5 (1-200)||(22292326-22292526)
chr5 (202-362)||(2157994-2158154)
chr5 (4-200)||(28246204-28246405)
chr5 (22-200)||(21092154-21092333)
chr5 (1-158)||(18759705-18759862)
chr5 (111-205)||(34920033-34920127)
chr5 (1-149)||(36044915-36045064)
chr5 (2-149)||(29754948-29755095)
chr5 (4-154)||(27493246-27493397)
chr5 (1-90)||(23622561-23622650)
chr5 (2-75)||(13948783-13948856)
chr5 (2-61)||(16088638-16088697)
chr5 (2-49)||(23976628-23976675)
chr5 (116-149)||(5335318-5335351)
chr5 (163-200)||(16085018-16085055)
chr5 (116-157)||(16088559-16088600)
[»] chr3 (25 HSPs)
chr3 (1-200)||(16739423-16739623)
chr3 (1-189)||(6006028-6006217)
chr3 (5-200)||(31809109-31809305)
chr3 (1-200)||(17790099-17790299)
chr3 (1-200)||(19098541-19098741)
chr3 (2-200)||(31935187-31935386)
chr3 (2-200)||(31973445-31973644)
chr3 (1-200)||(8565961-8566161)
chr3 (202-362)||(16739647-16739807)
chr3 (2-200)||(31660967-31661166)
chr3 (1-200)||(31228185-31228385)
chr3 (1-200)||(19602912-19603112)
chr3 (1-92)||(35906925-35907016)
chr3 (5-189)||(49499368-49499553)
chr3 (5-200)||(38015060-38015255)
chr3 (1-200)||(53394782-53394981)
chr3 (2-153)||(29372946-29373098)
chr3 (1-200)||(53437483-53437682)
chr3 (1-192)||(18357062-18357255)
chr3 (1-147)||(16877963-16878110)
chr3 (5-41)||(12526585-12526621)
chr3 (1-41)||(42626152-42626192)
chr3 (2-46)||(54561498-54561542)
chr3 (1-40)||(14485652-14485691)
chr3 (128-200)||(49643843-49643915)
[»] chr6 (10 HSPs)
chr6 (1-200)||(34355737-34355937)
chr6 (2-200)||(9959174-9959373)
chr6 (1-157)||(1493235-1493392)
chr6 (1-206)||(31029069-31029275)
chr6 (1-158)||(16890199-16890357)
chr6 (2-149)||(30140932-30141080)
chr6 (1-158)||(23508843-23509001)
chr6 (68-200)||(30588922-30589055)
chr6 (2-43)||(6695684-6695725)
chr6 (1-61)||(13768240-13768300)
[»] chr2 (18 HSPs)
chr2 (1-200)||(36641306-36641506)
chr2 (1-186)||(23379830-23380015)
chr2 (1-200)||(16206486-16206686)
chr2 (27-189)||(27267907-27268070)
chr2 (202-363)||(23379635-23379796)
chr2 (1-200)||(11818436-11818636)
chr2 (202-362)||(36641122-36641282)
chr2 (2-189)||(20661151-20661339)
chr2 (2-158)||(2058697-2058854)
chr2 (5-200)||(44886242-44886438)
chr2 (1-200)||(23761368-23761567)
chr2 (5-200)||(23762505-23762700)
chr2 (1-200)||(23789512-23789711)
chr2 (1-205)||(11553268-11553474)
chr2 (83-206)||(11502263-11502387)
chr2 (222-322)||(2058511-2058611)
chr2 (9-149)||(33650875-33651016)
chr2 (1-40)||(30848313-30848352)
[»] chr8 (18 HSPs)
chr8 (1-200)||(14505668-14505868)
chr8 (1-200)||(15990403-15990603)
chr8 (1-200)||(34723846-34724046)
chr8 (1-201)||(37590030-37590231)
chr8 (1-200)||(14657699-14657899)
chr8 (1-200)||(17837147-17837347)
chr8 (5-200)||(27978692-27978888)
chr8 (5-200)||(28035961-28036157)
chr8 (7-201)||(19299020-19299215)
chr8 (1-206)||(35284975-35285181)
chr8 (1-205)||(2246714-2246919)
chr8 (1-200)||(26931852-26932054)
chr8 (93-200)||(1186492-1186599)
chr8 (34-200)||(4518301-4518468)
chr8 (1-41)||(13700129-13700169)
chr8 (1-41)||(22897968-22898008)
chr8 (1-142)||(953675-953817)
chr8 (202-321)||(14657923-14658042)
[»] scaffold0789 (1 HSPs)
scaffold0789 (2-157)||(4210-4366)
[»] scaffold0040 (1 HSPs)
scaffold0040 (1-153)||(62481-62634)
[»] scaffold0011 (1 HSPs)
scaffold0011 (45-201)||(191041-191198)
[»] scaffold0252 (1 HSPs)
scaffold0252 (141-200)||(7866-7925)
[»] scaffold0019 (1 HSPs)
scaffold0019 (5-75)||(73335-73405)
[»] scaffold0643 (1 HSPs)
scaffold0643 (2-73)||(1123-1194)
[»] scaffold0341 (2 HSPs)
scaffold0341 (1-61)||(1929-1989)
scaffold0341 (1-61)||(9585-9645)


Alignment Details
Target: chr4 (Bit Score: 150; Significance: 3e-79; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 202 - 371
Target Start/End: Original strand, 16582555 - 16582724
Alignment:
Q  202 agaaaagcatcaaaagacaatttagaatccatttcgaaatccacgctatcaaactgcacatcgctcaaccattgtaaagctgaatgcaaaccaaacgctt 301  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  16582555 agaaaagcatcagaagacaatttagaatccatttcaaaatccacgctatcaaactgcatatcgctcaaccattgtaaagctgaatgcaaaccaaacgctt 16582654  T
Q  302 cacctacatcagctgaaacaacacacggtagtgacacatctttggccaaaacaaaagtaccagtataatc 371  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  16582655 cacctacatcagctgaaacaacacatggtagtgacacatctttggccaaaacaaaagtaccagtagaatc 16582724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 16582335 - 16582531
Alignment:
Q  5 ttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagcatga 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| | |||||||| |||||||||||    
T  16582335 ttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggtgggactagctagtaacgtgacttctcttgcaagagcatga 16582434  T
Q  104 tcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaatt 200  Q
     ||||||||||||||||| ||| |||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  16582435 gcagcctcgttggcttgtcgcccgacaaactccaccctaaagttggaaaataaaacagtaaacaaataacgacaagaagaaataatacagccaaatt 16582531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 16431348 - 16431526
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||| ||| ||||||||||||| | |||||||||||||| |||||||||||||||| |||||| || ||| ||||| |||||||||| |||||||    
T  16431348 atgcttataacatttcattaataataagaatttcaatacaactgagtatttcaaaataaacagcgggagtaactagtaacgtggcttctcttgcaagagc 16431447  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaa 178  Q
    |||| || ||||||||| |||| |||| |||||||||||||||||||| |||||||||  |||||||||||||||||||    
T  16431448 atgaacaacctcgttggtttgtcgcctaacaaactccaccctagagttagaaaataaaaaagtaaacaaagaacgacaa 16431526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 30859510 - 30859310
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||| ||||||| ||||||||||||| ||||||| | |||||||||||||||||||| |||  ||| ||| || ||| |||||||    
T  30859510 atgcttatagcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagttaaagacgtggcctcccttgcaagagc 30859411  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| || || ||||||||||| |||| |||||||||||||||||||| ||||| |||| | | |||||||||||||| || |||||||| || ||||||    
T  30859410 atgagcaaccacgttggcttgtcgcctaacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacatgaggaaataatgcatccaaat 30859311  T
Q  200 t 200  Q
    |    
T  30859310 t 30859310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 30190940 - 30191140
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||| ||| ||||||||||||| ||||||||||||| ||| ||| ||||||||||||||||||||||||||  ||| ||  ||||||  ||||||    
T  30190940 atgcttataacatttcattaataataagagtttcaatacaattggatatatcaaaataaacggcgggactagctaaagacgtggtctctcttgtaagagc 30191039  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| || || |||||||||||||||| ||||||||||||||| |||| |||||  ||| | | |||||||||||||| ||  ||||||| |||||||||    
T  30191040 atgagcaaccacgttggcttgttgcctaacaaactccaccctaaagttagaaaaggaagtactgaacaaagaacgacaggagaaaataatgcagccaaat 30191139  T
Q  200 t 200  Q
    |    
T  30191140 t 30191140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 55227759 - 55227559
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||| ||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||  | | ||| || ||| |||||||    
T  55227759 atgcttatagcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagctaaagatgtggcctcccttgcaagagc 55227660  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| || || |||||| |||| |||| |||||||||||||||||||| ||||| |||| | | |||||||||||||| || |||||||| || ||||||    
T  55227659 atgagcaaccacgttggtttgtcgcctaacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaat 55227560  T
Q  200 t 200  Q
    |    
T  55227559 t 55227559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 4235460 - 4235260
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctc-ttcaagagc 99  Q
    ||||||||||||| |||||||| |||||||| ||||||||| ||| ||| ||| |||||||||| | |||||||||  ||| ||| |||| | |||||||    
T  4235460 atgcttatagcatttcattaatcataatagtctcaatacaattggatatatcataataaacggcagaactagctaaagacgtggcctctcgtgcaagagc 4235361  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| |   | ||||||||||| |||| |||||||||||||||||||| |||||||||  |   ||||||||||||||| ||||||||||| | ||||||    
T  4235360 atgagccatcgcgttggcttgtggcctaacaaactccaccctagagttagaaaataaattatggaacaaagaacgacaaaaagaaataatagaaccaaat 4235261  T
Q  200 t 200  Q
    |    
T  4235260 t 4235260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 54823810 - 54823615
Alignment:
Q  7 atagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagcatgatc 105  Q
    ||||||| ||||||||||||| | ||||||||||| ||||||| ||||||||||||||||||||||||||  ||| | | ||||||  |||||||||| |    
T  54823810 atagcatttcattaataataaaaatttcaatacaattgggtatatcaaaataaacggcgggactagctaaagacgtgacctctcttgtaagagcatgaac 54823711  T
Q  106 agcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaattt 201  Q
    | |  ||||||||| | || | ||||||| |||||||||||| ||||| ||||   | |||||||||||||| || ||||||||||||| ||||||    
T  54823710 aactacgttggcttatcgcttaacaaacttcaccctagagttagaaaagaaagtgctgaacaaagaacgacaggaggaaataatacagctaaattt 54823615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 13686155 - 13685950
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||||||||||| || ||||||||||  |||||| | |||||||||   ||||||||||| ||||| | |||||||| ||||| |    
T  13686155 atgcttatagcatttcattaataataagagattcaatacaatcgggtatatgaaaataaacaatgggactagctagtaacgtgacttctcttgcaagaac 13686056  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| || || |||| |||||| |||| |||||||||||||||||||||| ||| |||| | | |||||||| ||||| || || ||||| || ||||||    
T  13686055 atgagcaaccccgtttgcttgtcgcctaacaaactccaccctagagttggtaaacaaagaactgaacaaagaccgacatgatgagataatgcacccaaat 13685956  T
Q  200 ttagaa 205  Q
    | ||||    
T  13685955 tcagaa 13685950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 2 - 189
Target Start/End: Complemental strand, 18878320 - 18878132
Alignment:
Q  2 tgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctc-ttcaagagca 100  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||| ||| |||||||| || || ||||||| |||| ||| |||| | ||| ||||    
T  18878320 tgcttatagcatttcattaataataatagtttcaatacaagtgggtatatcataataaacgacgagattagctaaaaacgtggcctctcgtgcaaaagca 18878221  T
Q  101 tgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataat 189  Q
    ||| || |  | ||| ||||| |||| |||||||||||||||||||| |||||||||     ||||||||||||||| || ||||||||    
T  18878220 tgagcaactgcattgacttgtcgcctaacaaactccaccctagagttagaaaataaattgcaaaacaaagaacgacatgaggaaataat 18878132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 192
Target Start/End: Original strand, 20527775 - 20527964
Alignment:
Q  4 cttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagcatg 102  Q
    |||||||||| ||||| ||||||| |||||||||||||  |||||| ||| |||||| |||||||||||| | ||||  ||| |||||| ||||||||||    
T  20527775 cttatagcatttcattgataataagagtttcaatacaatcgggtatatcataataaatggcgggactagcgagtaacaaggcctctcttgcaagagcatg 20527874  T
Q  103 atcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataataca 192  Q
    | || || |||| |||||  |||| ||||||||||||||||||||   |||   || | |||| |||||||||||||| |||||||||||    
T  20527875 agcaaccccgttagcttgccgcctaacaaactccaccctagagttaacaaaagtagaactaaataaagaacgacaagaggaaataataca 20527964  T

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Target: chr4; HSP #12
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 14264186 - 14263988
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||||||||||| ||||| ||||||||||||||  ||| |||||| ||| | ||||||  |  ||| ||| |||||| | | |||    
T  14264186 atgcttatagcatttcattaataataagagttttaatacaactgggtacatcataataaatggcagaactagcataagacgtggcctctcttgctaaagc 14264087  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaa 198  Q
    |||| || || ||||||||||| |||| |||||||| ||||| ||||||||||| ||   |  ||||||||||||||| ||||||||||| || |||||    
T  14264086 atgagcaaccgcgttggcttgtcgcctaacaaactctaccctggagttggaaaaaaagttacgaaacaaagaacgacatgaagaaataatgcacccaaa 14263988  T

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Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 37061042 - 37061248
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||| ||| || |||||||||| || ||||||||||  |||||| | |||||||||  ||||||||||||  |||  |||||||||| ||||  |    
T  37061042 atgcttataacatttcgttaataataagagattcaatacaatcgggtatgttaaaataaacaacgggactagctagaaacatggcttctcttgcaagcac 37061141  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| || || | || | ||||  |||  ||||||||||||||||||||| |||  |||   | || | |||  |||||||||||||||| || ||||||    
T  37061142 atgagcaaccacatttgtttgtcacctagcaaactccaccctagagttggtaaaagaagagctgaaaagagattgacaagaagaaataatgcacccaaat 37061241  T
Q  200 ttagaaa 206  Q
    | |||||    
T  37061242 tcagaaa 37061248  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 149
Target Start/End: Original strand, 27087441 - 27087589
Alignment:
Q  2 tgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggctt-ctcttcaagagca 100  Q
    |||||||||||| ||||||||||| | ||||||||||||| || |||| | |||||| |  ||||||||||| |  || | ||||| || | ||||||      
T  27087441 tgcttatagcatttcattaataatcaaagtttcaatacaattgagtatatgaaaatagatagcgggactagcgagaaatgtggcttcctttgcaagagtg 27087540  T
Q  101 tgatcagcctcgttggcttgttgcctgacaaactccaccctagagttgg 149  Q
    ||| |  || | || |||||| |||| ||||||||||||||||||||||    
T  27087541 tgacccaccacattagcttgtcgcctaacaaactccaccctagagttgg 27087589  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 27066340 - 27066411
Alignment:
Q  2 tgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagc 73  Q
    |||||||||||| ||||||||||| | ||||||||||||| || |||| | |||||| |  |||||||||||    
T  27066340 tgcttatagcatttcattaataatcaaagtttcaatacaattgagtatatgaaaatagatagcgggactagc 27066411  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 147
Target Start/End: Complemental strand, 28860935 - 28860789
Alignment:
Q  2 tgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctct-tcaagagca 100  Q
    |||||||||||||||||| ||||| | || |||||||||| || ||||  || |||||||  ||| |||||||||||| | ||| |||||  | ||||      
T  28860935 tgcttatagcatatcatttataatcaaagattcaatacaattgagtatagcataataaactacggcactagctaataatgtggcctctctagcgagagtg 28860836  T
Q  101 tgatcagcctcgttggcttgttgcctgacaaactccaccctagagtt 147  Q
    ||| |  || | ||||||||| |||| ||||||||||||| ||||||    
T  28860835 tgagctaccacattggcttgtcgcctaacaaactccacccgagagtt 28860789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 33480535 - 33480498
Alignment:
Q  5 ttatagcatatcattaataataatagtttcaatacaac 42  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  33480535 ttatagcatttcattaataataatagattcaatacaac 33480498  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 4227904 - 4227940
Alignment:
Q  5 ttatagcatatcattaataataatagtttcaatacaa 41  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  4227904 ttatagcatttcattaatcataatagtttcaatacaa 4227940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 12355370 - 12355314
Alignment:
Q  2 tgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaata 58  Q
    |||||| ||||| ||||||||||| | ||||||||||||| ||||||| | ||||||    
T  12355370 tgcttaaagcatttcattaataatcaaagtttcaatacaattgggtatatgaaaata 12355314  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 54886643 - 54886603
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaa 41  Q
    ||||||||||||| |||||||| ||||||| ||||||||||    
T  54886643 atgcttatagcatttcattaatgataatagattcaatacaa 54886603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 41117336 - 41117136
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||| ||||||||||||| ||||||| ||||||| ||||||||||||| ||||||||||| ||||| |||||||||| |||||||    
T  41117336 atgcttatagcatttcattgataataatagtttgaatacaattgggtatctcaaaataaacggtgggactagctagtaacgtggcttctcttgcaagagc 41117237  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| || |||| ||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  41117236 atgagcaacctcattggcttgtcgcctaacaaactccacccgagagttggaaaataaagcagtaaacaacgaacgacaagaagaaataatgcagccaaat 41117137  T
Q  200 t 200  Q
    |    
T  41117136 t 41117136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 30033729 - 30033529
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||| ||||||| |||||||||| || ||||||| | ||||||||||||||||||||||||  ||| ||| || ||| |||||||    
T  30033729 atgcttatagcatttcatttataataagagtttcaatataattgggtatattaaaataaacggcgggactagctaaagacgtggcctcccttgcaagagc 30033630  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| || || || |||||||| |||| |||||||||||||||||||| ||||| |||| | | |||||||||||||| || |||||||| || ||||||    
T  30033629 atgagcaaccacgctggcttgtcgcctaacaaactccaccctagagttagaaaagaaagtattgaacaaagaacgacatgaggaaataatgcatccaaat 30033530  T
Q  200 t 200  Q
    |    
T  30033529 t 30033529  T

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Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 2 - 200
Target Start/End: Original strand, 21701467 - 21701666
Alignment:
Q  2 tgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctc-ttcaagagca 100  Q
    |||||||||||| |||||||| |||| ||||||||||||| || |||| ||| ||||||||||||||||||||||  ||| ||| |||| |  |||||||    
T  21701467 tgcttatagcatttcattaatcataagagtttcaatacaattgagtatatcataataaacggcgggactagctaaagacgtggcctctcgtgaaagagca 21701566  T
Q  101 tgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaatt 200  Q
    ||| || || ||||||||| | |||| |||||||||||||||||||| |||||||||  |  |||||| |||||||| |||||||||||| | |||||||    
T  21701567 tgagcaaccacgttggcttatcgcctaacaaactccaccctagagttagaaaataaattacgaaacaacgaacgacaggaagaaataatagaaccaaatt 21701666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 2 - 200
Target Start/End: Original strand, 52147703 - 52147902
Alignment:
Q  2 tgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagca 100  Q
    ||||||||| || | ||| ||||||| ||||||||||||| || |||||||| ||||||| ||| ||||||||| ||||  |||||||||| |||||| |    
T  52147703 tgcttatagtattttattgataataagagtttcaatacaaatgagtatttcataataaaccgcgcgactagctagtaacatggcttctcttgcaagagaa 52147802  T
Q  101 tgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaatt 200  Q
    ||  || ||  ||| |||||| || | ||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||    
T  52147803 tgggcaaccctgttagcttgtcgcataacaaacttcaccttagagttggaaaataaagcagtaaacaaagaacaacaagaagaaataatgcagccgaatt 52147902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 4 - 290
Target Start/End: Original strand, 24427492 - 24427784
Alignment:
Q  4 cttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagcatg 102  Q
    |||||||||| |  || ||||||| ||||||||||||| || |||||||||||||||| || |||  |||||  || | || ||||||| |||||| |||    
T  24427492 cttatagcatttacttgataataagagtttcaatacaa-tgagtatttcaaaataaacagcaggatcagctaggaatgtggtttctcttgcaagagtatg 24427590  T
Q  103 atcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaatt-- 200  Q
    | |  |||| ||||||||| |||| | |||||| ||||||||||| |||||||||| |||||||||||||| |||||||||||||||  | |||||||      
T  24427591 agcgacctcattggcttgtcgcctaataaactcgaccctagagttagaaaataaagaagtaaacaaagaacaacaagaagaaataatgaaaccaaattca 24427690  T
Q  201 ----tagaaaagcatcaaaagacaatttagaatccatttcgaaatccacgctatcaaactgcacatcgctcaaccattgtaaagctgaatgcaa 290  Q
        ||||||||||||| ||| ||  |||| | || |||| ||||||||||||||||| ||||  || |||||||||| ||||||  |||||||    
T  24427691 gacatagaaaagcatcagaagtcagcttaggacccgtttcaaaatccacgctatcaaattgcatgtcactcaaccattataaagccaaatgcaa 24427784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 24065360 - 24065155
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttct-cttcaagagc 99  Q
    ||||||||||||| ||||||||||||| |  ||||||||||  |||||| | |||||||||  |||||||||||| ||||| ||||||| || ||||| |    
T  24065360 atgcttatagcatttcattaataataagaagttcaatacaatcgggtatgtgaaaataaacaacgggactagctagtaacgtggcttctcctgcaagaac 24065261  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| || ||||||| |||||| |||| ||||||||||||||| |||||| ||| |||| | |||||| ||| || || || || ||||| || ||||||    
T  24065260 atgagcaacctcgtttgcttgtcgcctaacaaactccaccctaaagttggtaaagaaagaactaaacagagaccggcatgatgagataatgcacccaaat 24065161  T
Q  200 ttagaa 205  Q
    | ||||    
T  24065160 tcagaa 24065155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 40490021 - 40490207
Alignment:
Q  15 tcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagcatgatcagcctcgt 113  Q
    ||||| ||||||| |||||||||| |    ||||| ||||||||||| ||||||||| ||| ||||||| |||||||| ||||||||||| |  |||| |    
T  40490021 tcattgataataagagtttcaatatattccggtatatcaaaataaacagcgggactaactagtaacgcgacttctcttgcaagagcatgagcgacctcat 40490120  T
Q  114 tggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaatt 200  Q
    ||| |||| |||| |||||||||||||||||||| ||||| || |   |||| ||||||||||| || ||||| |||||||||||||    
T  40490121 tggtttgtcgcctaacaaactccaccctagagttagaaaagaatgagctaaataaagaacgacatgaggaaatgatacagccaaatt 40490207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 202 - 362
Target Start/End: Complemental strand, 41117112 - 41116952
Alignment:
Q  202 agaaaagcatcaaaagacaatttagaatccatttcgaaatccacgctatcaaactgcacatcgctcaaccattgtaaagctgaatgcaaaccaaacgctt 301  Q
    ||||||||||||  | |||| ||||||||  |||||||||| ||||||||||||||||  |||||||||||||| | ||| |  ||||| ||||||||||    
T  41117112 agaaaagcatcagcaaacaacttagaatctgtttcgaaatcgacgctatcaaactgcatgtcgctcaaccattggagagcagcgtgcaacccaaacgctt 41117013  T
Q  302 cacctacatcagctgaaacaacacacggtagtgacacatctttggccaaaacaaaagtacc 362  Q
    | ||||||||||  ||||||  || ||||||||||||| |||| || |||||||| |||||    
T  41117012 cgcctacatcagtcgaaacagtacgcggtagtgacacaactttagctaaaacaaaggtacc 41116952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 200
Target Start/End: Complemental strand, 9361870 - 9361714
Alignment:
Q  45 ggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagcatgatcagcctcgttggcttgttgcctgacaaactccaccctag 143  Q
    ||||| ||| ||||||  ||| |||||| ||| |||| |||||||||| |||| |||||| || || ||||||||||| |||| ||||||||||||||||    
T  9361870 ggtatatcataataaatagcgagactagttaagaacgtggcttctcttgcaagtgcatgagcaaccgcgttggcttgtcgcctaacaaactccaccctag 9361771  T
Q  144 agttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaatt 200  Q
    |||| ||||| |||| | |||| |   |||||||||| ||||||||| |||||||||    
T  9361770 agttagaaaagaaagaactaaaaagcaaacgacaagatgaaataatagagccaaatt 9361714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 2 - 173
Target Start/End: Complemental strand, 49372464 - 49372292
Alignment:
Q  2 tgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagca 100  Q
    |||||||||||| ||||| ||||||| ||||||||||||| ||||||||| | ||||||| | |||||||| || ||||| ||||| |||| |||| |||    
T  49372464 tgcttatagcatttcattgataataagagtttcaatacaattgggtattttataataaacagtgggactagatattaacgtggcttttcttgcaagtgca 49372365  T
Q  101 tgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaac 173  Q
    ||| || ||  ||| | |||| | || ||||||| || |||| || | |||||||||| | ||||||||||||    
T  49372364 tgagcaaccatgttagtttgtcgtctaacaaacttcatcctatagctagaaaataaagaaataaacaaagaac 49372292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 24083524 - 24083322
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaa--ataaacggcgggactagctaataacgcggcttctctt-caaga 97  Q
    ||||||||||||| ||||||||||| |  | |||||||||    ||||| ||| |  |||||  |||||||||||||| |||| |||||||||| ||||     
T  24083524 atgcttatagcatttcattaataattaaggattcaatacattctggtatatcatataataaatagcgggactagctaagaacgtggcttctcttgcaagt 24083425  T
Q  98 gcatgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaa 197  Q
    |||||| || || ||||||||||| |||| |||||||||||| ||||||| ||||| |||| | |||| |   |||||||||| |||||| || | ||||    
T  24083424 gcatgagcaaccgcgttggcttgtcgcctaacaaactccaccgtagagttagaaaagaaagaactaaaaagcaaacgacaagatgaaatagtagaaccaa 24083325  T
Q  198 att 200  Q
    |||    
T  24083324 att 24083322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 5185265 - 5185414
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||| ||| ||||||||||||| |  ||||||| |   |||||| | |||||||| |||||||||||||  ||| | | |||||||| ||||| |    
T  5185265 atgcttataacatttcattaataataagatattcaatatattcgggtatataaaaataaatggcgggactagctggtaatgtgacttctcttgcaagaac 5185364  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttgg 149  Q
    |||| || |||| |||| |||| || | ||||||||||||||||||||||    
T  5185365 atgaacaacctcattggtttgtcgcttaacaaactccaccctagagttgg 5185414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 29115558 - 29115369
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||| |||  |||||||||||| || ||| ||||||  |||||| | |||||||||  |  ||||||||| ||||| | | |||||| || || |    
T  29115558 atgcttatatcattgcattaataataagaggttccatacaatcgggtatatgaaaataaacaacatgactagctagtaacgtgacctctcttacaggaac 29115459  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataat 189  Q
    |||| || ||||||| |||||| | || ||||||| |||||||||||||| ||| |||| | | |||||||| |||||||| || |||||    
T  29115458 atgagcaacctcgtttgcttgtcgtctaacaaactacaccctagagttggtaaagaaagaactgaacaaagaccgacaagatgagataat 29115369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 38488864 - 38488955
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt 92  Q
    ||||||||||||| ||||||||||||||| |||||||||||   || |||||| ||||||    |||||||||||| || | ||||||||||    
T  38488864 atgcttatagcatttcattaataataataatttcaatacaaagagggatttcataataaatatggggactagctaagaaagtggcttctctt 38488955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 30981372 - 30981315
Alignment:
Q  2 tgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataa 59  Q
    |||||||| ||| ||||||||||| | |||||||||||||||||||||  ||||||||    
T  30981372 tgcttataacatgtcattaataattaaagtttcaatacaactgggtataacaaaataa 30981315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 34696097 - 34696170
Alignment:
Q  2 tgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagcta 75  Q
    |||||||| ||||||||||||||| | |||||||||||||  |||||| | |||||||||  || |||||||||    
T  34696097 tgcttatatcatatcattaataatcaaagtttcaatacaatggggtatatgaaaataaacaacgagactagcta 34696170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 2002534 - 2002578
Alignment:
Q  5 ttatagcatatcattaataataatagtttcaatacaactgggtat 49  Q
    ||||||||| ||||||||||| | ||||||||||||||| |||||    
T  2002534 ttatagcatctcattaataatcaaagtttcaatacaactaggtat 2002578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 6507904 - 6507964
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaac 61  Q
    ||||||||| ||| ||||||||||||| || |||||||||  ||||||| | |||||||||    
T  6507904 atgcttataacatttcattaataataacaggttcaatacatttgggtatattaaaataaac 6507964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 28385254 - 28385218
Alignment:
Q  5 ttatagcatatcattaataataatagtttcaatacaa 41  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  28385254 ttataacatttcattaataataatagtttcaatacaa 28385218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 47726406 - 47726338
Alignment:
Q  5 ttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagc 73  Q
    ||||||||| |||||| |||| | ||||||||||||| ||||||| | ||||||||  | |||||||||    
T  47726406 ttatagcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaatagtgggactagc 47726338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 47747712 - 47747644
Alignment:
Q  5 ttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagc 73  Q
    ||||||||| |||||| |||| | ||||||||||||| ||||||| | ||||||||  | |||||||||    
T  47747712 ttatagcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaatagtgggactagc 47747644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 7e-62; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 15633376 - 15633176
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||| |||||  |||||||||||| ||||| |||||||||| ||||||     
T  15633376 atgcttatagcatttcattgataataatagtttcaatacaattgggtatttcaaagtaaacaacgggactagctagtaacgtggcttctcttgcaagagt 15633277  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| || |||| ||||||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||    
T  15633276 atgagcaacctcattggcttgtcgcctaacaaactccacccgagagttggaaaataaagcagtgaacaacgaacgacaagaagaaataatgcagccaaat 15633177  T
Q  200 t 200  Q
    |    
T  15633176 t 15633176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 13014956 - 13015155
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||| ||||||||||||||||||||| ||||||| |||||||||||  | |||||||||| ||||| || ||||||| |||||||    
T  13014956 atgcttatagcatttcattgataataatagtttcaatacaattgggtatctcaaaataaacaacaggactagctagtaacgtggattctcttgcaagagc 13015055  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| || |||||||||||||| |||| ||||||| ||||| ||||||||||||||||||||| ||||| ||| |||||||||||||||| |||||||||    
T  13015056 atgagcaacctcgttggcttgtcgcctaacaaactacacccgagagttggaaaataaagcagtgaacaatgaaagacaagaagaaataatgcagccaaat 13015155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 32480362 - 32480161
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||||||||||| ||||||||||||| || |||| | ||||||||| ||||||||||||||  ||| ||| || ||| ||||||     
T  32480362 atgcttatagcatttcattaataataagagtttcaatacaattgagtatattaaaataaactgcgggactagctaaagacgtggcctcccttgcaagagt 32480263  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| || || ||||||||||| |||| |||||||||||||||||||| ||||| |||| | | |||||||||||||| || |||||||| || ||||||    
T  32480262 atgagcaaccacgttggcttgtcgcctaacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaat 32480163  T
Q  200 tt 201  Q
    ||    
T  32480162 tt 32480161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 24226203 - 24226391
Alignment:
Q  4 cttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctc-ttcaagagcatg 102  Q
    |||||||||| ||||||||||||| ||||| ||||||| ||||||| ||| |||||||| |||||||||||||  ||| ||| |||| | ||||||||||    
T  24226203 cttatagcatttcattaataataagagtttaaatacaagtgggtatatcataataaacgtcgggactagctaaagacgtggcctctcgtgcaagagcatg 24226302  T
Q  103 atcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatac 191  Q
    | || || ||||||||||| |||| |||||||||||||||||| | |||||||||     ||||||||||||||| ||||| |||||||    
T  24226303 agcaaccgcgttggcttgtcgcctaacaaactccaccctagagctagaaaataaattctgaaacaaagaacgacaggaagagataatac 24226391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 2 - 200
Target Start/End: Complemental strand, 41601579 - 41601380
Alignment:
Q  2 tgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagca 100  Q
    |||||||||||| ||| | || |||||||||||||||||| ||||||| ||| ||||||| ||||||||||||||  | | ||| |||| | ||||||||    
T  41601579 tgcttatagcatttcactcatcataatagtttcaatacaattgggtatatcataataaacagcgggactagctaaagatgtggcctctcgtgcaagagca 41601480  T
Q  101 tgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaatt 200  Q
    ||| || || | ||||||||  |||| |||||||||||||||||||| |||||||||  |  ||||||||||||||| |||||||||||| | |||||||    
T  41601479 tgaacaaccgctttggcttgccgcctaacaaactccaccctagagttagaaaataaattacgaaacaaagaacgacaggaagaaataatagaaccaaatt 41601380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 3896612 - 3896455
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||||||||||| |||||||||||||  |||||| ||||||||||||||||||||||||||  ||| ||| |||||| |||| ||    
T  3896612 atgcttatagcatttcattaataataagagtttcaatacaatcgggtatatcaaaataaacggcgggactagctaaagacgtggcctctcttgcaagtgc 3896513  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaa 157  Q
    |||| || || ||||||||||| |||| |||||||||| | ||||||  |||||||||    
T  3896512 atgagcaaccacgttggcttgtcgcctaacaaactccagcatagagtaagaaaataaa 3896455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 8118792 - 8118992
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctc-ttcaagagc 99  Q
    ||||||||||||| ||||| || |||||||| ||||||||| ||||||| ||| |||| || ||||||||||||||  ||| ||| |||| | |||||||    
T  8118792 atgcttatagcatttcattgatcataatagtctcaatacaattgggtatatcataatagacagcgggactagctaaagacgtggcctctcgtgcaagagc 8118891  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| |  || |||| |||||| |||| ||||||||||||||||||||| ||||||||  |    |||||||||||||||||||||||||| | ||||||    
T  8118892 atgagccaccgcgttagcttgtcgcctaacaaactccaccctagagttgaaaaataaattacggtacaaagaacgacaagaagaaataatagaaccaaat 8118991  T
Q  200 t 200  Q
    |    
T  8118992 t 8118992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 202 - 362
Target Start/End: Original strand, 13015180 - 13015340
Alignment:
Q  202 agaaaagcatcaaaagacaatttagaatccatttcgaaatccacgctatcaaactgcacatcgctcaaccattgtaaagctgaatgcaaaccaaacgctt 301  Q
    ||||||||||||  |||||||||||||||  ||||||||||||| |||||||||||||  ||||||||| |||| | ||| |  ||||| ||||||||||    
T  13015180 agaaaagcatcagcagacaatttagaatctgtttcgaaatccacactatcaaactgcatgtcgctcaactattggagagcagcgtgcaacccaaacgctt 13015279  T
Q  302 cacctacatcagctgaaacaacacacggtagtgacacatctttggccaaaacaaaagtacc 362  Q
    ||||||||||||  ||||||  |||||||| ||||||| |||| ||||||| ||| |||||    
T  13015280 cacctacatcagtcgaaacagtacacggtaatgacacagctttagccaaaataaaggtacc 13015340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 202 - 362
Target Start/End: Complemental strand, 15633152 - 15632993
Alignment:
Q  202 agaaaagcatcaaaagacaatttagaatccatttcgaaatccacgctatcaaactgcacatcgctcaaccattgtaaagctgaatgcaaaccaaacgctt 301  Q
    ||||||| ||||  |||||||||||||||  ||||||||||||| |||||||||||||  |||||||||||||| | ||| |  ||||| ||||||||||    
T  15633152 agaaaagaatcagcagacaatttagaatctgtttcgaaatccacactatcaaactgcatgtcgctcaaccattggagagcagcgtgcaacccaaacgctt 15633053  T
Q  302 cacctacatcagctgaaacaacacacggtagtgacacatctttggccaaaacaaaagtacc 362  Q
    ||||||||||||  ||||||  |||||||| |||||||| ||| ||||||||||| |||||    
T  15633052 cacctacatcagtcgaaacagtacacggtaatgacacat-tttagccaaaacaaaggtacc 15632993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 47081645 - 47081802
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctc-ttcaagagc 99  Q
    ||||||||||||| ||||| || |||||||| ||||||||| ||||||| ||| |||| || ||||||||||||||  ||| ||| |||| | |||||||    
T  47081645 atgcttatagcatttcattgatcataatagtctcaatacaattgggtatatcataatagacagcgggactagctaaagacgtggcctctcgtgcaagagc 47081744  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaa 157  Q
    |||| |  || |||| |||||| |||| ||||||||||||||||||||||||||||||    
T  47081745 atgagccaccgcgttagcttgtcgcctaacaaactccaccctagagttggaaaataaa 47081802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 4645959 - 4646145
Alignment:
Q  15 tcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctc-ttcaagagcatgatcagcctcgt 113  Q
    ||||||||||||||||||||||||||| | ||||| ||| |||||||||||||| || ||||  ||| | | |||| | |||||||||||  | || |||    
T  4645959 tcattaataataatagtttcaatacaagttggtatatcataataaacggcgggattaactaaagacgtgacctctcgtgcaagagcatgaataaccgcgt 4646058  T
Q  114 tggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaatt 200  Q
    |||||||| || | |||||||||| ||||||||| |||||||||     ||||||||||||||| ||| ||||||| || |||||||    
T  4646059 tggcttgtcgcttaacaaactccatcctagagttagaaaataaattgcgaaacaaagaacgacaggaaaaaataatgcaaccaaatt 4646145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 17238666 - 17238867
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||| ||||| |  | |||||||||   |||||| ||| ||||||  | |||||||| ||| || | |||||||||| |||| ||    
T  17238666 atgcttatagcatttcattgataattaaggattcaatacattcgggtatatcataataaatagtgggactagttaagaatgtggcttctcttgcaagtgc 17238765  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| || || ||||||||||| |||| |||||||||||||||||||| ||||| |||| | |||| |   |||||||||| ||||||||| ||||||||    
T  17238766 atgagcaaccgcgttggcttgtcgcctaacaaactccaccctagagttagaaaagaaagaactaaaaagcaaacgacaagatgaaataatagagccaaat 17238865  T
Q  200 tt 201  Q
    ||    
T  17238866 tt 17238867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 26016675 - 26016474
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctcttc-aagagc 99  Q
    ||||||||||||| ||||||||||||| |  |||||||||| ||||||| ||||||||  |||| ||||||| |||  ||| ||  ||||||  ||| ||    
T  26016675 atgcttatagcatttcattaataataagatattcaatacaattgggtatatcaaaatagccggcaggactagttaaagacgtggtctctcttgtaagtgc 26016576  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    ||||  | || | ||| |||||  ||| |||||||||||||||||||| |||||||||  | | ||||| |||||||| || ||||||||||||||||||    
T  26016575 atgagtaaccgcattgacttgtctcctaacaaactccaccctagagttagaaaataaattactgaacaatgaacgacaggatgaaataatacagccaaat 26016476  T
Q  200 tt 201  Q
    ||    
T  26016475 tt 26016474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 30502653 - 30502500
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||| ||| ||||||||||||| |||||||||||||  |||||| ||||||||||| ||||||||||||||  ||| ||| |||||| ||||||     
T  30502653 atgcttataacatttcattaataataagagtttcaatacaatcgggtatatcaaaataaactgcgggactagctaaggacgtggcctctcttgcaagagt 30502554  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaa 153  Q
    |||| || || ||||| ||||| |  | |||||||||||| ||||||| |||||    
T  30502553 atgagcaaccgcgttgacttgtcgagtaacaaactccaccttagagttagaaaa 30502500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 35 - 192
Target Start/End: Original strand, 3205158 - 3205316
Alignment:
Q  35 aatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagcatgatcagcctcgttggcttgttgcctgacaaac 133  Q
    |||||||  |||||| || |||||||||||||||||||||||  ||| |||||||||| ||||||||||| || || |||||| |||| |||| ||||||    
T  3205158 aatacaatcgggtatatcgaaataaacggcgggactagctaaagacgtggcttctcttgcaagagcatgagcaaccacgttgggttgtcgcctaacaaac 3205257  T
Q  134 tccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataataca 192  Q
    |||||| || |||| ||||| |||  | | |||||  |||||||||||||||| |||||    
T  3205258 tccaccataaagttagaaaagaaattactgaacaacaaacgacaagaagaaatgataca 3205316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 27458285 - 27458085
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctct-tcaagagc 99  Q
    ||||||| ||||  |||||||||||||| | |||||||||| ||||||| ||| |||||||  |||  ||||||||  ||| ||| |||||  |||||||    
T  27458285 atgcttaaagcaattcattaataataatggattcaatacaattgggtatgtcataataaactacggagctagctaaggacgtggcatctctagcaagagc 27458186  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
     | | || ||||||||||||||  ||| | |||||||||||||||||| ||||| | || | |||| |  ||||||||||| ||||||||| | ||||||    
T  27458185 gttagcaacctcgttggcttgtctcctaataaactccaccctagagttagaaaaaacagaattaaatagcgaacgacaagatgaaataatagaaccaaat 27458086  T
Q  200 t 200  Q
    |    
T  27458085 t 27458085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 33611026 - 33611184
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttct-cttcaagagc 99  Q
    ||||||||||||| | ||||||||||| || ||||||||||  |||||| | |||||||||  |||||| ||||| ||||  ||| ||| || ||||| |    
T  33611026 atgcttatagcattttattaataataagaggttcaatacaatcgggtatatgaaaataaacaacgggaccagctagtaacatggcatctcctgcaagaac 33611125  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaag 158  Q
    |||| || ||  ||| |||||| |||| |||||||||||||||||||||| ||| ||||    
T  33611126 atgaacaaccctgtttgcttgtcgcctaacaaactccaccctagagttggtaaagaaag 33611184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 27810683 - 27810611
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagc 73  Q
    |||||||||| || ||||| ||||||||||||||||||||||||||||| | ||||||||| ||| |||||||    
T  27810683 atgcttatagaatttcatttataataatagtttcaatacaactgggtatattaaaataaacagcgagactagc 27810611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 48770259 - 48770101
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttct-cttcaagagc 99  Q
    ||||||||||||| ||||||||||||| ||||||||||||   |||||| | |||||||| || ||||||||||  ||| | ||||||| || | ||| |    
T  48770259 atgcttatagcatttcattaataataagagtttcaatacattcgggtatatgaaaataaatggtgggactagcttgtaatgtggcttctcctgcgagaac 48770160  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaag 158  Q
    |||| || |||| || |||| | |||  | |||||||||||||||||||| ||| ||||    
T  48770159 atgagcaacctcattagcttctcgccgaataaactccaccctagagttggtaaaaaaag 48770101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 44675490 - 44675351
Alignment:
Q  2 tgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagca 100  Q
    |||||||||||| |||||||||||||| |||||||||||| | || ||| || |||||  |  ||||||||||||  |  ||||||||||| | ||||||    
T  44675490 tgcttatagcatttcattaataataatcgtttcaatacaatttgggattacataataagtgatgggactagctaaggaaacggcttctcttgcgagagca 44675391  T
Q  101 tgatcagcctcgttggcttgttgcctgacaaactccaccc 140  Q
    ||| |||||   || |||||| |||| |||||||| ||||    
T  44675390 tgagcagccgaattcgcttgtcgcctaacaaactctaccc 44675351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 184
Target Start/End: Complemental strand, 11343235 - 11343055
Alignment:
Q  5 ttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagcatga 103  Q
    ||||||||| ||||| |||||||  ||||||||| |   |||||| | ||||||||| ||||||||||| |  |||| |||| ||||| |||| ||||||    
T  11343235 ttatagcatttcattgataataagtgtttcaatatattagggtatatgaaaataaacagcgggactagcgagcaacgtggctactcttgcaagggcatga 11343136  T
Q  104 tcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaa 184  Q
     || |  ||||   |||| |||| |||||||||| | |||||||||||||   || | |||| ||||||| ||||||||||    
T  11343135 gcaactccgtttatttgtcgcctaacaaactccatcatagagttggaaaaagtagaactaaataaagaacaacaagaagaa 11343055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 29962007 - 29961968
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaataca 40  Q
    ||||||||||||| |||||||||||||||| |||||||||    
T  29962007 atgcttatagcatttcattaataataatagattcaataca 29961968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 311
Target Start/End: Original strand, 3205379 - 3205457
Alignment:
Q  233 tttcgaaatccacgctatcaaactgcacatcgctcaaccattgtaaagctgaatgcaaaccaaacgcttcacctacatc 311  Q
    |||| ||||||||  ||||||||||||  || ||||||||||||| | | |||||||| || || ||||||||||||||    
T  3205379 tttcaaaatccacattatcaaactgcatgtcactcaaccattgtacaacagaatgcaaccctaaggcttcacctacatc 3205457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 4e-57; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 2157770 - 2157970
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||| ||||||||||||||||||||| ||||||| |||||||||||  |||||||||||| ||||| |||||||||| |||||||    
T  2157770 atgcttatagcatttcattgataataatagtttcaatacaattgggtatctcaaaataaacaacgggactagctagtaacgtggcttctcttgcaagagc 2157869  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    || | ||  ||||||||||||| |||| ||||||||||||| ||||||||||||||||| ||  ||||| |||||||||||||||||||| |||||||||    
T  2157870 ataagcaatctcgttggcttgtcgcctaacaaactccacccgagagttggaaaataaaggagggaacaacgaacgacaagaagaaataatgcagccaaat 2157969  T
Q  200 t 200  Q
    |    
T  2157970 t 2157970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 2 - 200
Target Start/End: Original strand, 19741524 - 19741723
Alignment:
Q  2 tgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagca 100  Q
    |||||||| ||| ||||| ||||||| ||||||||||||| |  ||||||||  |||||| ||||||||||||| ||| | |||||||||| ||||||||    
T  19741524 tgcttataacatttcattgataataagagtttcaatacaaatatgtatttcatgataaacagcgggactagctagtaatgtggcttctcttgcaagagca 19741623  T
Q  101 tgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaatt 200  Q
    ||| || || |||| |||||| |||| ||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  19741624 tgagcaaccccgttagcttgtcgcctaacaaatttcaccctagagttggaaaataaagaagtaaacaaagaacgacaagaagaaataatgcagccaaatt 19741723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 22292526 - 22292326
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||| ||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||  ||| ||| || ||| |||||||    
T  22292526 atgcttatagcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagctaaagacgtggcctcccttgcaagagc 22292427  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| || || ||||||||||| |||| |||||||||||||||||||| ||||| |||| | | |||||||||||||| || |||||||| || ||||||    
T  22292426 atgagcaaccacgttggcttgtcgcctaacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaat 22292327  T
Q  200 t 200  Q
    |    
T  22292326 t 22292326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 202 - 362
Target Start/End: Original strand, 2157994 - 2158154
Alignment:
Q  202 agaaaagcatcaaaagacaatttagaatccatttcgaaatccacgctatcaaactgcacatcgctcaaccattgtaaagctgaatgcaaaccaaacgctt 301  Q
    ||||||||||||  |||||||||||||||  ||||||||||||| |||||||||||||  |||||||||||||| | ||| |  ||||| ||||||||||    
T  2157994 agaaaagcatcagcagacaatttagaatctgtttcgaaatccacactatcaaactgcatgtcgctcaaccattggagagcagcgtgcaacccaaacgctt 2158093  T
Q  302 cacctacatcagctgaaacaacacacggtagtgacacatctttggccaaaacaaaagtacc 362  Q
    ||||||||||||  ||||||  |||||||| ||||||| |||| ||||||||||| |||||    
T  2158094 cacctacatcagtcgaaacagtacacggtaatgacacagctttagccaaaacaaaggtacc 2158154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 4 - 200
Target Start/End: Complemental strand, 28246405 - 28246204
Alignment:
Q  4 cttatagcatatcattaataataatagtttca----atacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagag 98  Q
    |||||| ||| ||||||||||||| |||||||    |||||| ||||||| | |||||||||||||||||||| |||  ||| | | |||||| ||||||    
T  28246405 cttataacatttcattaataataagagtttcattcaatacaattgggtatataaaaataaacggcgggactagttaaagacgtgacctctcttgcaagag 28246306  T
Q  99 catgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaa 198  Q
    ||||| || || ||||| ||||| | || |||||||||| ||||||||| ||||| |||| | | |||||||||| ||| || |||||||| ||||||||    
T  28246305 catgaacaaccacgttgacttgtcgtctaacaaactccatcctagagttagaaaagaaagtattgaacaaagaacaacaggaggaaataatgcagccaaa 28246206  T
Q  199 tt 200  Q
    ||    
T  28246205 tt 28246204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 200
Target Start/End: Complemental strand, 21092333 - 21092154
Alignment:
Q  22 taataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagcatgatcagcctcgttggcttg 120  Q
    |||||| ||||||||||||| ||||||||||||||||||||||  ||||||||||  | | | | ||| || |||||||||||    || | ||||||||    
T  21092333 taataagagtttcaatacaattgggtatttcaaaataaacggcatgactagctaaagatgtgacctctattacaagagcatgagggaccccattggcttg 21092234  T
Q  121 ttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaatt 200  Q
    | |||| | |||||||||||||||||| || || || | | ||||||||||||||||||| |||||||| ||||||||||    
T  21092233 tcgcctaataaactccaccctagagttagagaaaaaggtactaaacaaagaacgacaagatgaaataatgcagccaaatt 21092154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 18759862 - 18759705
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||||||||||| |||||||||| || ||||||| ||||||||||||||||||||| ||||  | | ||  |||||| |||||||    
T  18759862 atgcttatagcatttcattaataataaaagtttcaatataattgggtatatcaaaataaacggcgggactaactaaagatgtggtctctcttgcaagagc 18759763  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaag 158  Q
    ||||  | |  ||||||||| |  ||| |||||||||||||||||||| ||||| ||||    
T  18759762 atga-gaactgcgttggcttatcacctaacaaactccaccctagagttagaaaagaaag 18759705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 34920033 - 34920127
Alignment:
Q  111 cgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaatttagaa 205  Q
    |||| |||||| |||||| |||||| ||||||||||| ||||||||||   ||||||||||||||||||||| |||||| || ||||||| ||||    
T  34920033 cgtttgcttgtcgcctgaaaaactctaccctagagttagaaaataaagagttaaacaaagaacgacaagaagtaataatgcaaccaaattcagaa 34920127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 36045064 - 36044915
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttct-cttcaagagc 99  Q
    ||||||||||||| ||||||||||||| || |||||||||   ||| || | |||||||| || ||||||||||| ||| | ||||||| || |||||      
T  36045064 atgcttatagcatttcattaataataagagattcaatacattcgggcatatgaaaataaatggtgggactagctagtaatgtggcttctcctacaagaat 36044965  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttgg 149  Q
    |||| || |||| ||||||||| |||| ||||||| ||| ||||||||||    
T  36044964 atgagcaacctcattggcttgtcgcctaacaaacttcactctagagttgg 36044915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 2 - 149
Target Start/End: Original strand, 29754948 - 29755095
Alignment:
Q  2 tgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctcttcaagagcat 101  Q
    |||||||||||| ||||||||||| | ||||||||||||| ||||||| | |||||| |  ||||||||||| |  || | ||||||| | ||||||  |    
T  29754948 tgcttatagcatttcattaataatcaaagtttcaatacaattgggtatatgaaaatagatagcgggactagcgagaaatgtggcttctttgcaagagtgt 29755047  T
Q  102 gatcagcctcgttggcttgttgcctgacaaactccaccctagagttgg 149  Q
    || |  || | || |||||| |||| ||||||||||||||||||||||    
T  29755048 gagccaccacattagcttgtcgcctaacaaactccaccctagagttgg 29755095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 154
Target Start/End: Complemental strand, 27493397 - 27493246
Alignment:
Q  4 cttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttc-tcttcaagagcatg 102  Q
    |||| ||||| ||||| ||||| | || |||||||||| |||||||  || ||||||| ||||||||||||||||||| ||| || ||| | |||| |||    
T  27493397 cttagagcatttcatttataatcaaagattcaatacaattgggtataacataataaactgcgggactagctaataacgtggcctcttctgcgagagtatg 27493298  T
Q  103 atcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaat 154  Q
    | | ||  | ||||||||| || | ||||||||||||  |||||||||||||    
T  27493297 agctgctacattggcttgtcgcttaacaaactccacctgagagttggaaaat 27493246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 23622650 - 23622561
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctc 90  Q
    ||||||||||||| ||||||||||||| || ||||||||||  |||||| | |||||||||  || |||||||||  |||| ||||||||    
T  23622650 atgcttatagcatttcattaataataagagattcaatacaatcgggtatgttaaaataaacaacgagactagctagaaacgtggcttctc 23622561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 13948783 - 13948856
Alignment:
Q  2 tgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagcta 75  Q
    |||||||||||||||| ||||||| | |||||||||||||  |||||| | |||||||||  ||| ||||||||    
T  13948783 tgcttatagcatatcaataataatcaaagtttcaatacaatagggtatatgaaaataaacaacggaactagcta 13948856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 16088697 - 16088638
Alignment:
Q  2 tgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaac 61  Q
    |||||||||||| |||||||| ||||||||||||||| || ||| ||| ||| |||||||    
T  16088697 tgcttatagcatttcattaatcataatagtttcaatataattggatatatcataataaac 16088638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 23976675 - 23976628
Alignment:
Q  2 tgcttatagcatatcattaataataatagtttcaatacaactgggtat 49  Q
    |||||||||||||||||||||||| | |||||||||||| || |||||    
T  23976675 tgcttatagcatatcattaataatcaaagtttcaatacatctaggtat 23976628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Original strand, 5335318 - 5335351
Alignment:
Q  116 gcttgttgcctgacaaactccaccctagagttgg 149  Q
    ||||||||||| ||||||||||||||||||||||    
T  5335318 gcttgttgcctaacaaactccaccctagagttgg 5335351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 16085055 - 16085018
Alignment:
Q  163 aaacaaagaacgacaagaagaaataatacagccaaatt 200  Q
    |||||||||||||||||||||||||||| | |||||||    
T  16085055 aaacaaagaacgacaagaagaaataatagaaccaaatt 16085018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 16088600 - 16088559
Alignment:
Q  116 gcttgttgcctgacaaactccaccctagagttggaaaataaa 157  Q
    |||||| |||| |||||||||||||||||||| |||||||||    
T  16088600 gcttgtcgcctaacaaactccaccctagagttagaaaataaa 16088559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 16739423 - 16739623
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||| ||||||||||||||||||||| ||||||| |||||||||||  |||||||||||| ||||| |||||||||| |||||||    
T  16739423 atgcttatagcatttcattgataataatagtttcaatacaattgggtatctcaaaataaacaacgggactagctagtaacgtggcttctcttgcaagagc 16739522  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    || | ||  |||||||| |||| |||| ||||||||||||| ||||||||||||||||| ||| ||||| |||||||||||||||||||| |||||||||    
T  16739523 attagcaatctcgttggtttgtcgcctaacaaactccacccgagagttggaaaataaagtagtgaacaacgaacgacaagaagaaataatgcagccaaat 16739622  T
Q  200 t 200  Q
    |    
T  16739623 t 16739623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 6006028 - 6006217
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||| ||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||  ||| |||||| ||| |||||||    
T  6006028 atgcttatagcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagctaaagacgtggcttcccttgcaagagc 6006127  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataat 189  Q
    ||||  | || ||||||||||| |||| |||||||||||||||||||| ||||| |||| | | |||||||||||||| || ||||||||    
T  6006128 atgagaaaccacgttggcttgtcgcctaacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacatgaggaaataat 6006217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 5 - 200
Target Start/End: Complemental strand, 31809305 - 31809109
Alignment:
Q  5 ttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagcatga 103  Q
    ||||||||| |||||||| |||||||| ||||||||| ||| ||| ||| ||||||||||||||||||||||  ||| ||| |||| | |||||| ||||    
T  31809305 ttatagcatttcattaattataatagtctcaatacaattggatatatcataataaacggcgggactagctaaagacgtggcctctcgtgcaagaggatga 31809206  T
Q  104 tcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaatt 200  Q
     |  || ||||||||||| |||| ||||||||||||||||||||||||||||||  |  |||||||||||||||||||||||||||| | |||||||    
T  31809205 gccaccgcgttggcttgtcgcctaacaaactccaccctagagttggaaaataaattacgaaacaaagaacgacaagaagaaataatagaaccaaatt 31809109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 17790299 - 17790099
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||| ||||||| ||||||||||||| ||||||| | ||||||||||||  ||||||||||  ||| ||| || ||| |||||||    
T  17790299 atgcttatagcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggctagactagctaaagacgtggcctcccttgcaagagc 17790200  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
     ||| || || ||||||||||| |||| |||||||||||||||||||| ||||| |||| | | |||||||||||||| || |||||||| || ||||||    
T  17790199 gtgagcaaccacgttggcttgtcgcctaacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaat 17790100  T
Q  200 t 200  Q
    |    
T  17790099 t 17790099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 19098741 - 19098541
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||| ||||||| ||||||||||||| ||||||| | ||||||||||||  ||||||||||  ||| ||| || ||| |||||||    
T  19098741 atgcttatagcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggctagactagctaaagacgtggcctcccttgcaagagc 19098642  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
     ||| || || ||||||||||| |||| |||||||||||||||||||| ||||| |||| | | |||||||||||||| || |||||||| || ||||||    
T  19098641 gtgagcaaccacgttggcttgtcgcctaacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaat 19098542  T
Q  200 t 200  Q
    |    
T  19098541 t 19098541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 2 - 200
Target Start/End: Complemental strand, 31935386 - 31935187
Alignment:
Q  2 tgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagca 100  Q
    |||||| ||||| |||||||| || | || |||||||||| ||||||| ||| ||||||||||||||||||||||  ||| ||| |||| | ||||||||    
T  31935386 tgcttagagcatttcattaatcatcaaagattcaatacaattgggtatatcataataaacggcgggactagctaaagacgtggcctctcgtgcaagagca 31935287  T
Q  101 tgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaatt 200  Q
    ||| || |  ||||||||||| |||| |||||||||||||||||||| |||||||||  |  ||||||||||||||||||||  |||||| |||||||||    
T  31935286 tgagcaactgcgttggcttgtcgcctaacaaactccaccctagagttagaaaataaattacgaaacaaagaacgacaagaagtcataatagagccaaatt 31935187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 2 - 200
Target Start/End: Complemental strand, 31973644 - 31973445
Alignment:
Q  2 tgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagca 100  Q
    |||||| ||||| |||||||| || | || |||||||||| ||||||| ||| ||||||||||||||||||||||  ||| ||| |||| | ||||||||    
T  31973644 tgcttagagcatttcattaatcattaaagattcaatacaattgggtatatcataataaacggcgggactagctaaagacgtggcctctcgtgcaagagca 31973545  T
Q  101 tgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaatt 200  Q
    ||| || || ||||||||||| |||| |||||||||||| ||||||| |||||||||  |  ||||||||||||||||||||  |||||| |||||||||    
T  31973544 tgagcaaccgcgttggcttgtcgcctaacaaactccaccatagagttagaaaataaattacgaaacaaagaacgacaagaagtcataatagagccaaatt 31973445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 8566161 - 8565961
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctc-ttcaagagc 99  Q
    ||||||||||||| ||||| || |||||||| ||||||||| ||||||| ||| |||| || ||||||||||||||  ||| ||| |||| | |||||||    
T  8566161 atgcttatagcatttcattgatcataatagtctcaatacaattgggtatatcataatagacagcgggactagctaaagacgtggcctctcgtgcaagagc 8566062  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| |  || |||| |||||| |||| ||||||||||||||||||||||||||||||  |    |||||||||||||||||||||||||| | ||||||    
T  8566061 atgagccaccgcgttagcttgtcgcctaacaaactccaccctagagttggaaaataaattacggtacaaagaacgacaagaagaaataatagaaccaaat 8565962  T
Q  200 t 200  Q
    |    
T  8565961 t 8565961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 202 - 362
Target Start/End: Original strand, 16739647 - 16739807
Alignment:
Q  202 agaaaagcatcaaaagacaatttagaatccatttcgaaatccacgctatcaaactgcacatcgctcaaccattgtaaagctgaatgcaaaccaaacgctt 301  Q
    ||||||||||||  |||||||||||||||  ||||||||||||| |||||||||| ||  |||||||||||||| | ||| |  ||||| ||||||||||    
T  16739647 agaaaagcatcagcagacaatttagaatctgtttcgaaatccacactatcaaacttcatgtcgctcaaccattggagagcagcgtgcaacccaaacgctt 16739746  T
Q  302 cacctacatcagctgaaacaacacacggtagtgacacatctttggccaaaacaaaagtacc 362  Q
    ||||||||||||  ||||||  |||||||| ||||||| |||| ||||||||||| |||||    
T  16739747 cacctacatcagtcgaaacagtacacggtaatgacacagctttagccaaaacaaaggtacc 16739807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 2 - 200
Target Start/End: Original strand, 31660967 - 31661166
Alignment:
Q  2 tgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagca 100  Q
    |||||| || || |||||||| || | || |||||||||| ||||||| ||| |||||||||||||||||| ||| || | | | |||| | ||||||||    
T  31660967 tgcttagagtatttcattaatcattaaagattcaatacaattgggtatatcataataaacggcgggactagataaaaaagtgacctctcgtgcaagagca 31661066  T
Q  101 tgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaatt 200  Q
    ||| || || ||||||||||| |||| |||||||||||||||||||| |||||||||  |  ||||||||||||||||||||  |||||| |||||||||    
T  31661067 tgagcaaccgcgttggcttgtcgcctaacaaactccaccctagagttagaaaataaattacgaaacaaagaacgacaagaagtcataatagagccaaatt 31661166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 31228385 - 31228185
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||| ||||||| ||||||||||||| ||  ||| | ||||||||| |||||| |||||||  ||| ||| ||  || |||||||    
T  31228385 atgcttatagcatttcatttataataagagtttcaatacaattgaatatattaaaataaactgcgggattagctaaagacgtggcctccattgcaagagc 31228286  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| || || ||||||||||| |||| |||||||||||||||||||| ||||| |||| | | || ||||||||||  || |||||||| || ||||||    
T  31228285 atgagcaaccacgttggcttgtcgcctaacaaactccaccctagagttagaaaagaaagtactgaataaagaacgacgggaggaaataatgcatccaaat 31228186  T
Q  200 t 200  Q
    |    
T  31228185 t 31228185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 19602912 - 19603112
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||||||||||| || || |||||||  || ||| || ||||||| |  |||||||||||| ||||  ||||||||| ||||||     
T  19602912 atgcttatagcatttcattaataataagagattaaatacaatcggatatatcgaaataaatgctgggactagctaaaaacgtcgcttctcttgcaagagt 19603011  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| || || ||||| |||||  ||| |||||||||||||||||||| |||||||||  | | || |  |||||||||||| |||| ||||||||||||    
T  19603012 atgagcaaccgcgttgccttgtcacctaacaaactccaccctagagttagaaaataaattactgaaaagcgaacgacaagaaaaaatgatacagccaaat 19603111  T
Q  200 t 200  Q
    |    
T  19603112 t 19603112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 35906925 - 35907016
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt 92  Q
    ||||||||||||| ||||| ||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||||| ||||| ||||||||||    
T  35906925 atgcttatagcatttcattgataatgatagtttcaatacaattgggtatctcaaaataaacagcgggactagctagtaacgtggcttctctt 35907016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 5 - 189
Target Start/End: Complemental strand, 49499553 - 49499368
Alignment:
Q  5 ttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagcatga 103  Q
    ||||||||| ||||||||||||| || ||||||||||  || ||| | ||||||||   || |||||||||  |||| |||||||||| ||||| |||||    
T  49499553 ttatagcatttcattaataataagagattcaatacaatcggatatgttaaaataaataacgagactagctagaaacgtggcttctcttgcaagaacatga 49499454  T
Q  104 tcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataat 189  Q
     ||||| | || |||||| ||||  ||||||||||||||||||||| ||| ||||   | |||| ||| |||||||||||||||||    
T  49499453 gcagccacatttgcttgtcgcctagcaaactccaccctagagttggtaaaaaaagagctgaacagagatcgacaagaagaaataat 49499368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 38015060 - 38015255
Alignment:
Q  5 ttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagcatga 103  Q
    ||||||||| ||||| ||||||| || |||||||||| || |||| ||| |||| || ||| |||||| || ||||| | | |||||| |||| |||| |    
T  38015060 ttatagcatttcattgataataagagattcaatacaa-tgagtatatcataatagacagcgagactagttagtaacgtgacatctcttgcaagtgcataa 38015158  T
Q  104 tcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaatt 200  Q
     || || |||| |||||| |||| |||||||||||| ||||||| ||||||||||   ||||||||||||||||| ||| |||||| || |||||||    
T  38015159 gcaaccccgttagcttgtcgcctaacaaactccaccatagagttagaaaataaagagttaaacaaagaacgacaataagtaataatgcaaccaaatt 38015255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 53394981 - 53394782
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||||||||||| |||||||||| || |  | || ||||||||||| ||  ||||||||||  ||| |||||||||| |||||||    
T  53394981 atgcttatagcatttcattaataataagagtttcaatataa-tcagaatatcaaaataaactgcacgactagctaaagacgtggcttctcttgcaagagc 53394883  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| || || | ||  |||||  ||| | |||||||||||||||||| ||||| |||    | ||||| ||||||||||| |||||||| || ||||||    
T  53394882 atgagcaaccgcattcacttgtctcctaaaaaactccaccctagagttagaaaagaaactgctgaacaacgaacgacaagaggaaataatgcaaccaaat 53394783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 29372946 - 29373098
Alignment:
Q  2 tgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagca 100  Q
    |||||||||||| ||||| ||||||| ||||||||||||   |||||  | |||||||||  | |||||||||| ||||| | ||||||||  |||||||    
T  29372946 tgcttatagcatttcattgataataagagtttcaatacattcgggtaaattaaaataaacaaccggactagctagtaacgtgacttctcttgaaagagca 29373045  T
Q  101 tgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaa 153  Q
    ||  || ||||||||| |||| |||| |||||||| | ||||||||| |||||    
T  29373046 tgggcaacctcgttggtttgtcgcctaacaaactctatcctagagttagaaaa 29373098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 53437682 - 53437483
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||||||||||| |||||||||| || |  | || |||||||||||  |  ||||||||||  | | |||||||||| |||||||    
T  53437682 atgcttatagcatttcattaataataagagtttcaatataa-tcagaatatcaaaataaactacacgactagctaaagatgtggcttctcttgcaagagc 53437584  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| ||  | | ||| |||||  ||| |||||||||||||||||||| ||||| ||||   | ||||| ||||| ||||| |||||||| || ||||||    
T  53437583 atgagcaatcgcattgacttgtctcctaacaaactccaccctagagttagaaaagaaagtgctgaacaacgaacggcaagaggaaataatgcaaccaaat 53437484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 18357255 - 18357062
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttct-cttcaagagc 99  Q
    ||||||||||||| |||| |||||||| || ||||||| |   |||||| |||||||||||  ||| | |||||| ||||| ||||||| || |||||||    
T  18357255 atgcttatagcatttcatgaataataagagattcaatatattcgggtatatcaaaataaacaacggaattagctagtaacgtggcttctcctgcaagagc 18357156  T
Q  100 atgatcagcctcg-ttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataataca 192  Q
    |||| ||  | || ||||||| |  ||| |||||||||||||||||||||| ||| ||||   | || || |||||||| ||| ||||||||||    
T  18357155 atgagcaatcccgtttggcttatcacctaacaaactccaccctagagttggtaaagaaagatttgaataaggaacgacatgaataaataataca 18357062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 16877963 - 16878110
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| |||||||||||||||||||||||||||   || |||||| ||||||    ||||||||||||  | | |||||||||| | |  ||    
T  16877963 atgcttatagcatttcattaataataatagtttcaatacaaagagggatttcataataaatatggggactagctaaggaagtggcttctcttgctaaggc 16878062  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagtt 147  Q
    |||| | ||| | || |||||||||| || |||||| |||||||||||    
T  16878063 atgagctgccgcattcgcttgttgccggataaactcgaccctagagtt 16878110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 12526585 - 12526621
Alignment:
Q  5 ttatagcatatcattaataataatagtttcaatacaa 41  Q
    ||||||||| |||||||||||||||||||||||||||    
T  12526585 ttatagcatttcattaataataatagtttcaatacaa 12526621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 42626192 - 42626152
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaa 41  Q
    ||||||||||||| | |||||||||||||||||||||||||    
T  42626192 atgcttatagcattttattaataataatagtttcaatacaa 42626152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 54561498 - 54561542
Alignment:
Q  2 tgcttatagcatatcattaataataatagtttcaatacaactggg 46  Q
    |||||||||||| | |||||||||||||| |||||||||||||||    
T  54561498 tgcttatagcatttgattaataataatagattcaatacaactggg 54561542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 14485691 - 14485652
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaataca 40  Q
    ||||||||||||| |||||||||||||||| |||||||||    
T  14485691 atgcttatagcatttcattaataataataggttcaataca 14485652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 49643915 - 49643843
Alignment:
Q  128 acaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaatt 200  Q
    ||||||||||||||| |||| |||||||||| | |||| |   |||||||||| ||||||||| || ||||||    
T  49643915 acaaactccaccctatagttagaaaataaagaactaaaaagcaaacgacaagatgaaataatagagtcaaatt 49643843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 34355737 - 34355937
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||| ||||||| ||||||||||||| ||||||| ||||||||||| ||||||||||||| ||||  || ||||||| |||||||    
T  34355737 atgcttatagcatttcattgataataagagtttcaatacaattgggtatatcaaaataaacagcgggactagctagtaacatggtttctcttgcaagagc 34355836  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| || |||||||||||| | || | ||||||| ||||||||||||  ||||||||| |||||||||||||||||||||||||||||| || ||||||    
T  34355837 atgagcaacctcgttggcttttcgcataacaaacttcaccctagagttaaaaaataaagaagtaaacaaagaacgacaagaagaaataatgcaaccaaat 34355936  T
Q  200 t 200  Q
    |    
T  34355937 t 34355937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 2 - 200
Target Start/End: Complemental strand, 9959373 - 9959174
Alignment:
Q  2 tgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctc-ttcaagagca 100  Q
    |||||||||||| |||||||| |||||||| ||||||||| ||||||| ||| ||||||||||||||||||||||  ||| |  ||||| | ||||||||    
T  9959373 tgcttatagcatttcattaatcataatagtctcaatacaattgggtatatcataataaacggcgggactagctaaagacgtgagttctcgtgcaagagca 9959274  T
Q  101 tgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaatt 200  Q
    ||| || || ||||||||||| |||| |||||||||||||||||||| ||| |||||  |   ||||||||||||||||||||||||||| | |||||||    
T  9959273 tgagcaaccgcgttggcttgtcgcctaacaaactccaccctagagttagaatataaattacggaacaaagaacgacaagaagaaataatagaaccaaatt 9959174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 1493235 - 1493392
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||| |||||||||||||||||| || ||||||| || |||||||||||||||||||||||  ||| ||| |||||| |||||||    
T  1493235 atgcttatagcatttcattgataataatagtttcaatataattgggtatatcgaaataaacggcgggactagctaaagacgtggcctctcttgcaagagc 1493334  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaa 157  Q
    |||| || || ||||||||||| |||| |||||||||||||||||||| |||||||||    
T  1493335 atgagcaaccgcgttggcttgtcgcctaacaaactccaccctagagttagaaaataaa 1493392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 31029275 - 31029069
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctc-ttcaagagc 99  Q
    ||||||||||||| ||||| || |||||||| ||||||||| ||||||| ||| |||| || ||||||||||||||  ||| ||| |||| | ||||||     
T  31029275 atgcttatagcatttcattgatcataatagtctcaatacaattgggtatatcataatagacagcgggactagctaaggacgtggcctctcgtgcaagagt 31029176  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| |  ||  ||| |||||| |||| ||||||||||||||||||||||||||||||  |    |||||||||||||||||||||||||| | ||||||    
T  31029175 atgagccaccgtgttagcttgtcgcctaacaaactccaccctagagttggaaaataaattacggtacaaagaacgacaagaagaaataatagaaccaaat 31029076  T
Q  200 ttagaaa 206  Q
    | |||||    
T  31029075 tcagaaa 31029069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 16890357 - 16890199
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    |||||||| |||| |||||||||| || |||||||| |||| ||||||| |||||||||||||||| ||||| |||  | | |||||||||| |||||||    
T  16890357 atgcttattgcatttcattaataacaagagtttcaaaacaattgggtatatcaaaataaacggcggtactagttaaagatgtggcttctcttgcaagagc 16890258  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaag 158  Q
    |||| || || |||||  |||| |||| ||||||||||||||||||||  |||||||||    
T  16890257 atgagcaaccgcgttgctttgtcgcctaacaaactccaccctagagttataaaataaag 16890199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 149
Target Start/End: Original strand, 30140932 - 30141080
Alignment:
Q  2 tgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggctt-ctcttcaagagca 100  Q
    |||||||||||| ||||||||||| | ||||||||||||| ||||||| | |||||| |  ||||||||||| |  || | ||||| || | ||||||      
T  30140932 tgcttatagcatttcattaataatcaaagtttcaatacaattgggtatatgaaaatagatagcgggactagcgagaaatgtggcttcctttgcaagagtg 30141031  T
Q  101 tgatcagcctcgttggcttgttgcctgacaaactccaccctagagttgg 149  Q
    |||||  || | || |||||| |||| ||||||||||||||||||||||    
T  30141032 tgatccaccacattagcttgtcgcctaacaaactccaccctagagttgg 30141080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 23508843 - 23509001
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttct-cttcaagagc 99  Q
    |||||||| |||| ||||||||||||| || ||||||||||   ||||| | ||| |||||  |||||||||||  ||| | ||||||| || ||||| |    
T  23508843 atgcttattgcatttcattaataataagaggttcaatacaatcaggtatgtgaaattaaacaacgggactagctcgtaatgtggcttctcctgcaagaac 23508942  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaag 158  Q
    |||| || || | || |||||| |||| ||||||||||||||||| |||| ||| ||||    
T  23508943 atgagcaaccccatttgcttgtcgcctaacaaactccaccctagaattggtaaagaaag 23509001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 200
Target Start/End: Complemental strand, 30589055 - 30588922
Alignment:
Q  68 actagctaataacgcggcttctctt-caagagcatgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaac 166  Q
    ||||||||| |||| |||||||||| ||||||||||| || ||  |||||| ||| |   ||||||||||||||||||||| ||||| |||| | ||||     
T  30589055 actagctaagaacgtggcttctcttgcaagagcatgagcaaccgtgttggcatgtcgtaggacaaactccaccctagagttagaaaagaaagaactaaaa 30588956  T
Q  167 aaagaacgacaagaagaaataatacagccaaatt 200  Q
    |   |||||||||| || |||||| |||||||||    
T  30588955 agtaaacgacaagatgagataatagagccaaatt 30588922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 6695725 - 6695684
Alignment:
Q  2 tgcttatagcatatcattaataataatagtttcaatacaact 43  Q
    |||||||| ||| |||||||| ||||||||||||||||||||    
T  6695725 tgcttataacatttcattaatgataatagtttcaatacaact 6695684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 13768300 - 13768240
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaac 61  Q
    ||||||||||||| | ||||||||||| || ||||||||||  |||||| | |||||||||    
T  13768300 atgcttatagcatttgattaataataagagattcaatacaatcgggtatataaaaataaac 13768240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 36641506 - 36641306
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    |||||||||| || ||||| ||||||||| |||||||| || ||||||| |||||||||||  |||||||||||| ||| | ||||||| || |||||||    
T  36641506 atgcttatagtatttcattgataataataatttcaatataattgggtatctcaaaataaacaacgggactagctagtaatgtggcttcttttgcaagagc 36641407  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| || |||||||||||||| |||| ||||||||||||| ||||||| ||||||||||||| ||||| |||||||||||||||||||| |||||||||    
T  36641406 atgagcaacctcgttggcttgtcgcctaacaaactccacccgagagttgaaaaataaagcagtgaacaacgaacgacaagaagaaataatgcagccaaat 36641307  T
Q  200 t 200  Q
    |    
T  36641306 t 36641306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 23380015 - 23379830
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||| ||| ||||||||||||||||||||||||||| ||||||||| ||||||||| |||| |||||||| ||| | | |||||||| | |||||    
T  23380015 atgcttataacatttcattaataataatagtttcaatacaattgggtattttaaaataaacagcggaactagctagtaatgtgacttctcttgcgagagc 23379916  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaat 186  Q
    || | || ||||||||||| ||  ||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23379915 ataaacaacctcgttggct-gtcacctaataaactccaccctagagttggaaaatacagcagtaaacaaagaacgacaagaagaaat 23379830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 16206686 - 16206486
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||| ||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||  ||| ||| || ||| |||||||    
T  16206686 atgcttatagcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagctaaagacgtggcctcccttgcaagagc 16206587  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| || || ||||||||||| |||| |||||||||||||||||||| ||||| |||| | | |||||||||||||| || |||||||| || ||||||    
T  16206586 atgagcaaccacgttggcttgtcgcctaacaaactccaccctagagttagaaaagaaagtaatgaacaaagaacgacaggaggaaataatgcatccaaat 16206487  T
Q  200 t 200  Q
    |    
T  16206486 t 16206486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 27 - 189
Target Start/End: Original strand, 27267907 - 27268070
Alignment:
Q  27 atagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagcatgatcagcctcgttggcttgttgcc 125  Q
    ||||||||||||||| ||||||||||| |||||||   ||||||| ||| ||||| |||||||||| |||| | |||| || ||||||| ||||||  ||    
T  27267907 atagtttcaatacaattgggtatttcataataaacaatgggactaactagtaacgtggcttctcttgcaagtgtatgagcaacctcgttagcttgtcacc 27268006  T
Q  126 tgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataat 189  Q
    | |||||||||||||||||||| |||||||||| | ||||||||||| ||||||||||||||||    
T  27268007 taacaaactccaccctagagttagaaaataaagaaataaacaaagaatgacaagaagaaataat 27268070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 202 - 363
Target Start/End: Complemental strand, 23379796 - 23379635
Alignment:
Q  202 agaaaagcatcaaaagacaatttagaatccatttcgaaatccacgctatcaaactgcacatcgctcaaccattgtaaagctgaatgcaaaccaaacgctt 301  Q
    ||||| ||||||  ||||||||||||||||||||||||||||||||||||||| ||||  || |||||||| ||||||||| |||| | |||||| ||||    
T  23379796 agaaaggcatcagcagacaatttagaatccatttcgaaatccacgctatcaaattgcatgtcactcaaccactgtaaagctaaatgtagaccaaaagctt 23379697  T
Q  302 cacctacatcagctgaaacaacacacggtagtgacacatctttggccaaaacaaaagtacca 363  Q
    | || |||||| ||| ||||| ||| ||||| ||||||  |||||||| |||||||||||||    
T  23379696 cgcccacatcaactggaacaagacaaggtagagacacaattttggccagaacaaaagtacca 23379635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 11818436 - 11818636
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttct-cttcaagagc 99  Q
    ||||||||||||| ||||||||||||| || ||||||| || ||||||| | ||||||||   |||||||||||| ||||| ||||||| || ||||| |    
T  11818436 atgcttatagcatttcattaataataagaggttcaatataattgggtatctgaaaataaataacgggactagctagtaacgtggcttctcctgcaagaac 11818535  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| || ||||||| |||||| |||| |||||||||||||||||||||| ||| |||| | |||||| |||  |||| || || ||||| || ||||||    
T  11818536 atgagcaacctcgtttgcttgtcgcctaacaaactccaccctagagttggtaaagaaagaactaaacagagactgacatgatgagataatgcacccaaat 11818635  T
Q  200 t 200  Q
    |    
T  11818636 t 11818636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 202 - 362
Target Start/End: Complemental strand, 36641282 - 36641122
Alignment:
Q  202 agaaaagcatcaaaagacaatttagaatccatttcgaaatccacgctatcaaactgcacatcgctcaaccattgtaaagctgaatgcaaaccaaacgctt 301  Q
    ||||||||||||  | |||||||||||||  |||| |||||||| |||||||||||||  |||||||||||||| | ||| |  ||||| ||||||||||    
T  36641282 agaaaagcatcagcaaacaatttagaatctgtttcaaaatccacactatcaaactgcatgtcgctcaaccattggagagcagcgtgcaacccaaacgctt 36641183  T
Q  302 cacctacatcagctgaaacaacacacggtagtgacacatctttggccaaaacaaaagtacc 362  Q
    | ||||||||||  ||||||  |||||||| ||||||| |||| ||||||||||| |||||    
T  36641182 ctcctacatcagtcgaaacagtacacggtaatgacacagctttagccaaaacaaaggtacc 36641122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 2 - 189
Target Start/End: Complemental strand, 20661339 - 20661151
Alignment:
Q  2 tgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagca 100  Q
    |||||||||||| ||||| ||||| | || |||||||||| ||||||| ||| |||| || ||||||||||||| ||||| ||  |||||| ||||||||    
T  20661339 tgcttatagcatttcattgataatcaaagattcaatacaattgggtatgtcataatagacagcgggactagctagtaacgtggtgtctcttgcaagagca 20661240  T
Q  101 tgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataat 189  Q
    ||| || ||  |||  |||||  ||| |||||||||||||||||| | ||||||||||   ||||  ||||||||||||||| ||||||    
T  20661239 tgagcaaccctgttaacttgtcacctaacaaactccaccctagaggtagaaaataaagagttaaaataagaacgacaagaagtaataat 20661151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 2 - 158
Target Start/End: Complemental strand, 2058854 - 2058697
Alignment:
Q  2 tgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagca 100  Q
    |||||||| ||| | ||| ||||||| ||||||||||||| ||||||| ||| ||||||| |||||| ||||||||||||  | ||||||| ||||||||    
T  2058854 tgcttataacatttaattgataataagagtttcaatacaattgggtatatcataataaacagcgggattagctaataacgtagtttctcttgcaagagca 2058755  T
Q  101 tgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaag 158  Q
    |||  | ||  ||||| |||| |||| |||||||||||| ||||||| ||||| ||||    
T  2058754 tgagtaaccgtgttggtttgtcgcctaacaaactccaccttagagttcgaaaagaaag 2058697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 200
Target Start/End: Complemental strand, 44886438 - 44886242
Alignment:
Q  5 ttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagcatga 103  Q
    ||||||||| ||||| ||||| |  | |||||||||   |||||| ||| ||||||  | |||| ||||||| |||| |||||||||| |||| ||||||    
T  44886438 ttatagcatttcattgataattaaggattcaatacattcgggtatatcataataaatagtgggattagctaagaacgtggcttctcttgcaagtgcatga 44886339  T
Q  104 tcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaatt 200  Q
     || || ||||| ||||| |||| |||||||||||||||||||| ||||| |||| | |||| |   |||||||||| ||||||||| |||||||||    
T  44886338 gcaaccgcgttgacttgtcgcctaacaaactccaccctagagttagaaaagaaagaactaaaaagcaaacgacaagatgaaataatagagccaaatt 44886242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 23761368 - 23761567
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||| ||||| | |||||||||||||  |||||| ||| ||||||||||||||||||  | ||||  ||  |||||| |||||||    
T  23761368 atgcttatagcatttcattgataatcagagtttcaatacaatcgggtatatcataataaacggcgggactagtgagtaacaaggtatctcttgcaagagc 23761467  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| ||  | |||| |||||| |||| |||||||||| |||||||||   |||   || | |||| ||||||||| |||| ||||||||||| ||||||    
T  23761468 atgagcaatcccgtttgcttgtcgcctaacaaactcca-cctagagttaacaaaagtagaactaaataaagaacgataagaggaaataatacaaccaaat 23761566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 23762505 - 23762700
Alignment:
Q  5 ttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagcatga 103  Q
    ||||||||| ||||| ||||| | |||||||||||||  |||||| | | ||||||||||||||||||| | ||||  |||  ||||| |||||||| ||    
T  23762505 ttatagcatttcattgataatcagagtttcaatacaatcgggtatattataataaacggcgggactagcaagtaacaaggccactcttgcaagagcacga 23762604  T
Q  104 tcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaatt 200  Q
     ||  | |||| |||||| |||| |||||||||| |||||||||   |||   || | |||| |||||||||||||| |||||||||||||||||||    
T  23762605 gcaatcccgttagcttgtcgcctaacaaactcca-cctagagttaacaaaagtagaactaaataaagaacgacaagaggaaataatacagccaaatt 23762700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 23789512 - 23789711
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||| ||||| | |||||||||||||  |||||| ||| ||||||||||||||||||  | ||||  ||  |||||| |||||||    
T  23789512 atgcttatagcatttcattgataatcagagtttcaatacaatcgggtatatcataataaacggcgggactagtgagtaacaaggtatctcttgcaagagc 23789611  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| ||  | |||| |||||| |||| |||||||||| |||||||||   |||   || | |||| ||||||||| |||| ||||||||||| ||||||    
T  23789612 atgagcaatcccgtttgcttgtcgcctaacaaactcca-cctagagttaacaaaagtagaactaaataaagaacgataagaggaaataatacaaccaaat 23789710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 11553474 - 11553268
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttct-cttcaagagc 99  Q
    |||||||||| || ||||||||||||| |||||||||| |   |||||| | |||||||| || ||||||||||| ||| | ||||||| || | ||| |    
T  11553474 atgcttatagtatttcattaataataagagtttcaatatattcgggtatatgaaaataaatggtgggactagctagtaatgtggcttctcctgcgagaac 11553375  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttgg-aaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaa 198  Q
    ||||||| |||| || |||||| |||    |||||||||||||||||||| |||| ||||   |||  | |   ||||| ||||||||||||||||||||    
T  11553374 atgatcaacctcattagcttgtcgccgagtaaactccaccctagagttggtaaaaaaaagagctaactagactgcgacatgaagaaataatacagccaaa 11553275  T
Q  199 tttagaa 205  Q
     ||||||    
T  11553274 cttagaa 11553268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 206
Target Start/End: Complemental strand, 11502387 - 11502263
Alignment:
Q  83 ggcttctctt-caagagcatgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaa 181  Q
    |||||||||| |||||| |||| || || ||||||||||| |||| |||||||||||||||||||| |||||||||     ||||||||||||||| |      
T  11502387 ggcttctcttgcaagagtatgagcaaccacgttggcttgtcgcctaacaaactccaccctagagttagaaaataaattgcgaaacaaagaacgacaggtt 11502288  T
Q  182 gaaataatacagccaaatttagaaa 206  Q
    | ||||||| | ||||||| |||||    
T  11502287 gtaataatagaaccaaattcagaaa 11502263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 222 - 322
Target Start/End: Complemental strand, 2058611 - 2058511
Alignment:
Q  222 tttagaatccatttcgaaatccacgctatcaaactgcacatcgctcaaccattgtaaagctgaatgcaaaccaaacgcttcacctacatcagctgaaaca 321  Q
    |||||| ||| |||| |||||||||||||| ||||||| ||| || | |||||| ||||| ||||| ||||| || |||||||| |||||| | ||||||    
T  2058611 tttagagtccgtttcaaaatccacgctatcgaactgcatatcacttagccattgcaaagccgaatgtaaacctaaggcttcaccaacatcaaccgaaaca 2058512  T
Q  322 a 322  Q
    |    
T  2058511 a 2058511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 33651016 - 33650875
Alignment:
Q  9 agcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttc-tcttcaagagcatgatcag 107  Q
    ||||| ||||||||||||| |  |||||||| | ||||||| | |||||||||  ||||||||||||  |||| | |||| ||| ||||  ||||| ||     
T  33651016 agcatttcattaataataagatattcaatacgattgggtatgttaaaataaacaacgggactagctagaaacgtgacttcttctgcaagcacatgaacaa 33650917  T
Q  108 cctcgttggcttgttgcctgacaaactccaccctagagttgg 149  Q
    || | || |||||||||||| |||||| ||| ||||||||||    
T  33650916 ccgcatttgcttgttgcctggcaaacttcactctagagttgg 33650875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 30848352 - 30848313
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaataca 40  Q
    ||||||||||||| |||||||||||||||| |||||||||    
T  30848352 atgcttatagcatttcattaataataatagattcaataca 30848313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 14505868 - 14505668
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||| ||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||  ||| ||| || ||| |||||||    
T  14505868 atgcttatagcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagctaaagacgtggcctcccttgcaagagc 14505769  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| || || ||||||||||| |||| |||||||||||||||||||| ||||| |||| | | |||||||||||||| || |||||||| || ||||||    
T  14505768 atgagcaaccacgttggcttgtcgcctaacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaat 14505669  T
Q  200 t 200  Q
    |    
T  14505668 t 14505668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 15990403 - 15990603
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||| ||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||  ||| ||| || ||| |||||||    
T  15990403 atgcttatagcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagctaaagacgtggcctcccttgcaagagc 15990502  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| || || ||| ||||||| |||| |||||||||||||||||||| ||||| |||| | | |||||||||||||| || |||||||| || ||||||    
T  15990503 atgagcaaccacgtaggcttgtcgcctaacaaactccaccctagagttagaaaagaaagtaatgaacaaagaacgacaggaggaaataatgcatccaaat 15990602  T
Q  200 t 200  Q
    |    
T  15990603 t 15990603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 34723846 - 34724046
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||| ||||| |||||||| ||||||| |||||||||| ||||||| ||| ||||||||||| ||||||||||  ||| |||||||||| ||||||     
T  34723846 atgcttagagcatttcattaatcataatagattcaatacaattgggtatatcataataaacggcgagactagctaaagacgtggcttctcttgcaagagt 34723945  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| || || ||||||||||| |||| |||||||||||||| ||||| |||||||||  |  ||||||||||||||| |||| ||||||| ||||||||    
T  34723946 atgagcaaccacgttggcttgtcgcctaacaaactccaccctggagttagaaaataaattacgaaacaaagaacgacaggaagtaataatagagccaaat 34724045  T
Q  200 t 200  Q
    |    
T  34724046 t 34724046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 37590030 - 37590231
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||||||||||| ||||||||||||| ||||||| | |||||||||||||| |||||||||  ||| ||| || ||| |||||||    
T  37590030 atgcttatagcatttcattaataataagagtttcaatacaattgggtatattaaaataaacggcggaactagctaaagacgtggcctcccttgcaagagc 37590129  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| || || ||||||||||| |||| |||||||||||||||||||| ||||| |||  | | |||||||||||||  || |||| ||| || ||||||    
T  37590130 atgagcaaccacgttggcttgtcgcctaacaaactccaccctagagttagaaaagaaaatactgaacaaagaacgacgggaggaaacaatgcatccaaat 37590229  T
Q  200 tt 201  Q
    ||    
T  37590230 tt 37590231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 14657699 - 14657899
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||| || |||| ||||||||||||| | ||||| |||||||||||   | |||| |||| ||||| |||||||||| |||||||    
T  14657699 atgcttatagcatttcattgattataagagtttcaatacaattaggtatatcaaaataaacaatgtgactggctagtaacgtggcttctcttgcaagagc 14657798  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    ||||    ||| |||||||||| |||| |||||||||||||||||||| |||| ||||  |||||||||| || |||||||||||||||| || ||||||    
T  14657799 atgagataccttgttggcttgtcgcctaacaaactccaccctagagttagaaactaaataagtaaacaaataatgacaagaagaaataatgcaaccaaat 14657898  T
Q  200 t 200  Q
    |    
T  14657899 t 14657899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 17837147 - 17837347
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||||||||| | || ||||||| ||  |||||| || ||||||||||| |||||||||||  ||| |||||||||| ||||||     
T  17837147 atgcttatagcatttcattaataattaaagattcaatataatcgggtatatcgaaataaacggcaggactagctaaagacgtggcttctcttgcaagagt 17837246  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| || || ||||||||||| |||| |||||||||||||||||||| ||||| |||  | | |||||  ||||||||||| |||| ||||||||||||    
T  17837247 atgagcaaccgcgttggcttgtcgcctaacaaactccaccctagagttagaaaagaaattactgaacaacaaacgacaagaaaaaatgatacagccaaat 17837346  T
Q  200 t 200  Q
    |    
T  17837347 t 17837347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 200
Target Start/End: Complemental strand, 27978888 - 27978692
Alignment:
Q  5 ttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagcatga 103  Q
    ||||| ||| |||||||| ||||||||||||||| || ||||||| ||| ||||||||  ||||||||||||  ||| ||| |||| | |||||||||||    
T  27978888 ttataacatttcattaatcataatagtttcaataaaattgggtatatcataataaacgaagggactagctaaagacgtggcctctcgtgcaagagcatga 27978789  T
Q  104 tcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaatt 200  Q
     || || ||||||||||| |||| |||||||||||| ||||||| |||||||||     ||||||||||||||| ||||||||||||| ||||||||    
T  27978788 gcaaccgcgttggcttgtagcctaacaaactccaccatagagttagaaaataaattgcgaaacaaagaacgacaggaagaaataatacggccaaatt 27978692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 200
Target Start/End: Complemental strand, 28036157 - 28035961
Alignment:
Q  5 ttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagcatga 103  Q
    ||||| ||| |||||||| ||||||||||||||| || ||||||| ||| ||||||||  ||||||||||||  ||| ||| |||| | |||||||||||    
T  28036157 ttataacatttcattaatcataatagtttcaataaaattgggtatatcataataaacgaagggactagctaaagacgtggcctctcgtgcaagagcatga 28036058  T
Q  104 tcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaatt 200  Q
     || || ||||||||||| |||| |||||||||||| ||||||| |||||||||     ||||||||||||||| ||||||||||||| ||||||||    
T  28036057 gcaaccgcgttggcttgtagcctaacaaactccaccatagagttagaaaataaattgcgaaacaaagaacgacaggaagaaataatacggccaaatt 28035961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 7 - 201
Target Start/End: Original strand, 19299020 - 19299215
Alignment:
Q  7 atagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagcatgatc 105  Q
    ||||||| ||||||||||||| | ||||||||||| ||||||| ||||||||||||||||||||||||||  ||| | | ||||||  |||||||||| |    
T  19299020 atagcatttcattaataataaaaatttcaatacaattgggtatatcaaaataaacggcgggactagctaaagacgtgacctctcttgtaagagcatgaac 19299119  T
Q  106 agcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaattt 201  Q
    | |  ||||||||| | || | ||||||| |||||||||||| ||||| ||||   | |||||||||||||| || ||||||||||||| ||||||    
T  19299120 aactacgttggcttatcgcttaacaaacttcaccctagagttagaaaagaaagtgctgaacaaagaacgacaggaggaaataatacagctaaattt 19299215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 35285181 - 35284975
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctc-ttcaagagc 99  Q
    ||||||||||||| ||||| || |||||||  ||||||||| ||||||| ||| |||| || ||||||||||||||  ||| ||| |||| | ||||||     
T  35285181 atgcttatagcatttcattgatcataatagcctcaatacaattgggtatatcataatagacagcgggactagctaaggacgtggcctctcgtgcaagagt 35285082  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| |  || |||| |||||| |||| ||||||||||||||||||||||||||||||  |    |||||||||||||||||||||||||| | ||||||    
T  35285081 atgagccaccgcgttagcttgtcgcctaacaaactccaccctagagttggaaaataaattacggtacaaagaacgacaagaagaaataatataaccaaat 35284982  T
Q  200 ttagaaa 206  Q
    | |||||    
T  35284981 tcagaaa 35284975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 2246714 - 2246919
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagc 99  Q
    ||||||||||||| ||||||||||||| || ||||||||||   ||||| | |||||||||  |  ||||||||| ||||  | |||||| | ||||| |    
T  2246714 atgcttatagcatttcattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacatgactagctagtaacatgacttctcctgcaagaac 2246813  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaat 199  Q
    |||| || ||||||| ||||||||||| |||||||||||||||||||||| ||| |||| | |||||| ||| ||||| || || ||||| || ||||||    
T  2246814 atgagcaacctcgtttgcttgttgcctaacaaactccaccctagagttggtaaagaaagaattaaacagagaccgacatgatgagataatgcacccaaat 2246913  T
Q  200 ttagaa 205  Q
    | ||||    
T  2246914 tcagaa 2246919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 26931852 - 26932054
Alignment:
Q  1 atgcttatagcatatcattaata--ataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caaga 97  Q
    ||||||||| ||| |||||||||  |||| || |||||||||   || ||| | |||||||| |||| ||||||||| ||| | |||||||| | |||||    
T  26931852 atgcttatatcatttcattaatataataagagattcaatacattcggatatatgaaaataaatggcgagactagctagtaatgtggcttctcctgcaaga 26931951  T
Q  98 gcatgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaa 197  Q
     ||||| || | || |||||||||||||| |||||||| ||||||||||||| ||| |||| | |||  | || |||||| ||||||||||| || ||||    
T  26931952 acatgaacaacttcattggcttgttgcctaacaaactctaccctagagttggtaaagaaagaactaactagagtacgacaggaagaaataatgcacccaa 26932051  T
Q  198 att 200  Q
    |||    
T  26932052 att 26932054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 93 - 200
Target Start/End: Complemental strand, 1186599 - 1186492
Alignment:
Q  93 caagagcatgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataataca 192  Q
    ||||||||||| || || ||||||||||| |||| |||||||||||||||||||| |||||| ||| |   || ||||||||||| || |||||||| ||    
T  1186599 caagagcatgagcaaccacgttggcttgtcgcctaacaaactccaccctagagttagaaaatgaagtacagaataaagaacgacaggaggaaataatgca 1186500  T
Q  193 gccaaatt 200  Q
     |||||||    
T  1186499 accaaatt 1186492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 34 - 200
Target Start/End: Complemental strand, 4518468 - 4518301
Alignment:
Q  34 caatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagcatgatcagcctcgttggcttgttgcctgacaaa 132  Q
    |||||||| ||| ||| ||| |||| || ||||||||||||||  ||| ||  |||| | ||||||||||| |  || |||| |||||| |||| |||||    
T  4518468 caatacaattggatatatcataatagacagcgggactagctaaagacgtggtctctcgtgcaagagcatgagccaccgcgttagcttgtcgcctaacaaa 4518369  T
Q  133 ctccaccctagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaatt 200  Q
    |||||||||| | ||||||||||||  |  | | |||||||||||||||||||||||| | |||||||    
T  4518368 ctccaccctataattggaaaataaattacgataaaaagaacgacaagaagaaataatagaaccaaatt 4518301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 13700129 - 13700169
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaa 41  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  13700129 atgcttatagcatttcattaataataatagtttcaatacaa 13700169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 22898008 - 22897968
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaa 41  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  22898008 atgcttatagcatttcattaataataatagtttcaatacaa 22897968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 953817 - 953675
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttct-cttcaagagc 99  Q
    ||||| ||||||| | ||||||||||| || |||||||||| | | ||| | |||||||||  |||||||||||| ||||| | ||||| || ||||| |    
T  953817 atgctcatagcattttattaataataagaggttcaatacaattagatatgtgaaaataaacaacgggactagctagtaacgtgacttctcctgcaagaac 953718  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccacccta 142  Q
    |||| ||  |||||| |||||| ||   |||||||||||||||    
T  953717 atgagcaaactcgtttgcttgtcgctaaacaaactccacccta 953675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 321
Target Start/End: Original strand, 14657923 - 14658042
Alignment:
Q  202 agaaaagcatcaaaagacaatttagaatccatttcgaaatccacgctatcaaactgcacatcgctcaaccattgtaaagctgaatgcaaaccaaacgctt 301  Q
    |||||||||||| | | ||  ||||||||| |||| ||||||||||||||||||| ||  || |||||||| ||||| || || ||||||| ||  | ||    
T  14657923 agaaaagcatcagacgtcagcttagaatccgtttcaaaatccacgctatcaaactacaagtcactcaaccactgtaatgccgagtgcaaacaaagtgttt 14658022  T
Q  302 cacctacatcagctgaaaca 321  Q
    | ||||| ||| ||||||||    
T  14658023 ctcctacgtcaactgaaaca 14658042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0789 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0789
Description:

Target: scaffold0789; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 2 - 157
Target Start/End: Original strand, 4210 - 4366
Alignment:
Q  2 tgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctc-ttcaagagca 100  Q
    |||||||||||| ||||| ||||||||||||||||||||| ||||||| ||| | |||| |||||||||||||||  | | ||| | || | ||| ||||    
T  4210 tgcttatagcatttcattgataataatagtttcaatacaagtgggtatatcatattaaatggcgggactagctaaagatgtggcctttcgtgcaatagca 4309  T
Q  101 tgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaataaa 157  Q
    ||| || |||| ||||||||| |||| |||||||||||||||||||| |||||||||    
T  4310 tgagcaacctctttggcttgtcgcctaacaaactccaccctagagttagaaaataaa 4366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 62481 - 62634
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagctaataacgcggcttctct-tcaagagc 99  Q
    ||||||||||||| ||||||||||||| ||||||||||||| || |||| | ||||||||| ||||||||||||||  | | ||| |  ||   |||||     
T  62481 atgcttatagcatttcattaataataagagtttcaatacaattgagtatattaaaataaacagcgggactagctaaagaagtggcctacctagaaagaga 62580  T
Q  100 atgatcagcctcgttggcttgttgcctgacaaactccaccctagagttggaaaa 153  Q
    |||| || || ||||||||||| |||| |||||||||||||||||||| |||||    
T  62581 atgagcaaccacgttggcttgtcgcctaacaaactccaccctagagttagaaaa 62634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 45 - 201
Target Start/End: Original strand, 191041 - 191198
Alignment:
Q  45 ggtatttcaaaataaacggcgggactagctaataacgcggcttctctt-caagagcatgatcagcctcgttggcttgttgcctgacaaactccaccctag 143  Q
    ||||| ||| ||||||  |||||||||| ||| |||| ||||| |||| |||| |||||| || || ||||||||||| |||| ||||||||||||||||    
T  191041 ggtatatcataataaatagcgggactagttaagaacgtggcttttcttgcaagtgcatgagcaaccgcgttggcttgtcgcctaacaaactccaccctag 191140  T
Q  144 agttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaattt 201  Q
    |||| ||||| |||| | |||| |   |||||||||| ||||||||| ||||||||||    
T  191141 agttagaaaagaaagaactaaaaagcaaacgacaagatgaaataatagagccaaattt 191198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 7925 - 7866
Alignment:
Q  141 tagagttggaaaataaagcagtaaacaaagaacgacaagaagaaataatacagccaaatt 200  Q
    |||||||||||||||||  |  |||||||||||||||||||||||||||| | |||||||    
T  7925 tagagttggaaaataaattacgaaacaaagaacgacaagaagaaataatagaaccaaatt 7866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 73335 - 73405
Alignment:
Q  5 ttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagcta 75  Q
    ||||| ||||||||||||||| | ||||||||||||| ||||||| | ||| |||||  ||||||||||||    
T  73335 ttataacatatcattaataatcaaagtttcaatacaattgggtatataaaagtaaacaacgggactagcta 73405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0643 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0643
Description:

Target: scaffold0643; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 1194 - 1123
Alignment:
Q  2 tgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggcgggactagc 73  Q
    |||||||||||| ||||||||||| | |  |||||||||| ||||||| | ||||||||  |||||||||||    
T  1194 tgcttatagcatttcattaataatcaaacattcaatacaattgggtatatgaaaataaatagcgggactagc 1123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 1929 - 1989
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaac 61  Q
    ||||||||| ||| ||||||||||||| || |||||||||  ||||||| | |||||||||    
T  1929 atgcttataacatttcattaataataacaggttcaatacatttgggtatattaaaataaac 1989  T

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Target: scaffold0341; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 9585 - 9645
Alignment:
Q  1 atgcttatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaac 61  Q
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T  9585 atgcttataacatttcattaataataacaggttcaatacatttgggtatattaaaataaac 9645  T

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