View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17512_low_15 (Length: 278)
Name: NF17512_low_15
Description: NF17512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17512_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 53138584 - 53138816
Alignment:
| Q |
13 |
cagagaagaaagcaatggcatgcaatgaagatgctttggttattttcacctgcgaattgccaaaaacatatttagttatattttcagcaacacatcgtcg |
112 |
Q |
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| T |
53138584 |
cagagaagaaagcaatggcatgcaatgaagatgctttggttattttcacctgcgaattaccaaaaacatatttagttatattttcagcaacacgtcgtcg |
53138683 |
T |
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| Q |
113 |
tgtttcgattaattgaagtgaaagacnnnnnnngtactaaaagccaagctgtagtagaaacaggtgtcaataataatagcggagttgcttctccactaac |
212 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53138684 |
tgtttcgattaattgaagtgaaagacaaaaaaagtactaaaagccaagctgtagtagaaacaggtgtcaataataatagcggagttgcttctccactaac |
53138783 |
T |
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| Q |
213 |
atgtaatgtaatgtattattgttgttgatgatg |
245 |
Q |
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| T |
53138784 |
atgtaatgtaatgtattattattgttgttgatg |
53138816 |
T |
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