View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17512_low_20 (Length: 259)
Name: NF17512_low_20
Description: NF17512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17512_low_20 |
 | |
|
| [»] scaffold0470 (1 HSPs) |
| | |
|
| [»] scaffold0514 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0470 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 5 - 246
Target Start/End: Original strand, 11254 - 11495
Alignment:
| Q |
5 |
gatagagtttattttgaagctaccgaagttgttaacaaagnnnnnnnnacgtggataggattgtcggcatttattgggttatgccatacactaaggttgg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
11254 |
gatagagtttattttgaagctaccgaagttgttaacaaagttttttttacgtggattggattgtcggcgtttattggtttatgccatacactaaggttgg |
11353 |
T |
|
| Q |
105 |
ttacttggggagtgattgttctcctggaaagaaataagaagccaaaaactccaaaaagtacaaaggagactccgatttgctagttttttaaaacttcatt |
204 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11354 |
ttacttggggagtgattgttctcctcgaaagaaataagaagccaaaaagtacaaaaaatacaaaggagactccgatttgctagttttttaaaacttcatt |
11453 |
T |
|
| Q |
205 |
actatgagtctttatttgtgacgtctcaaccatataatatta |
246 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||| |||| |
|
|
| T |
11454 |
actatgagtctttatttgggacgtctcgaccatataaaatta |
11495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 5 - 246
Target Start/End: Original strand, 6621836 - 6622077
Alignment:
| Q |
5 |
gatagagtttattttgaagctaccgaagttgttaacaaagnnnnnnnnacgtggataggattgtcggcatttattgggttatgccatacactaaggttgg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
6621836 |
gatagagtttattttgaagctaccgaagttgttaacaaagttttttttacgtggattggattgtcggcgtttattggtttatgccatacactaaggttgg |
6621935 |
T |
|
| Q |
105 |
ttacttggggagtgattgttctcctggaaagaaataagaagccaaaaactccaaaaagtacaaaggagactccgatttgctagttttttaaaacttcatt |
204 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6621936 |
ttacttggggagtgattgttctcctcgaaagaaataagaagccaaaaagtacaaaaaatacaaaggagactccgatttgctagttttttaaaacttcatt |
6622035 |
T |
|
| Q |
205 |
actatgagtctttatttgtgacgtctcaaccatataatatta |
246 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||| |||| |
|
|
| T |
6622036 |
actatgagtctttatttgggacgtctcgaccatataaaatta |
6622077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 5 - 246
Target Start/End: Original strand, 6788714 - 6788946
Alignment:
| Q |
5 |
gatagagtttattttgaagctaccgaagttgttaacaaagnnnnnnnnacgtggataggattgtcggcatttattgggttatgccatacactaaggttgg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
6788714 |
gatagagtttattttgaagctaccgaagttgttaacaaagttttttttacgtggattggattgtcggcgtttattggtttatgccatacactaaggttgg |
6788813 |
T |
|
| Q |
105 |
ttacttggggagtgattgttctcctggaaagaaataagaagccaaaaactccaaaaagtacaaaggagactccgatttgctagttttttaaaacttcatt |
204 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6788814 |
ttacttggggagtgattgttctcctcgaaagaaataagaag---------ccaaaaagtacaaaggagactccgatttgctagttttttaaaacttcatt |
6788904 |
T |
|
| Q |
205 |
actatgagtctttatttgtgacgtctcaaccatataatatta |
246 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||| |||| |
|
|
| T |
6788905 |
actatgagtctttatttgggacgtctcgaccatataaaatta |
6788946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 6 - 246
Target Start/End: Original strand, 6841370 - 6841610
Alignment:
| Q |
6 |
atagagtttattttgaagctaccgaagttgttaacaaagnnnnnnnnacgtggataggattgtcggcatttattgggttatgccatacactaaggttggt |
105 |
Q |
| |
|
|||| |||||| |||||||||| ||||||||||||| | ||||||||||||||||| | ||| |||| ||||||||||||||||||||||| |
|
|
| T |
6841370 |
atagtgtttatgttgaagctacaaaagttgttaacaaggtttttcttacgtggataggattgtcagggtttgttggtttatgccatacactaaggttggt |
6841469 |
T |
|
| Q |
106 |
tacttggggagtgattgttctcctggaaagaaataagaagccaaaaactccaaaaagtacaaaggagactccgatttgctagttttttaaaacttcatta |
205 |
Q |
| |
|
|||||||||||||| |||| |||| |||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6841470 |
tacttggggagtgaatgttttcctcaaaagaagtaagaagccagagactccaaaaagtacaaaggagactccgatttgctagttttttaaaacttcatta |
6841569 |
T |
|
| Q |
206 |
ctatgagtctttatttgtgacgtctcaaccatataatatta |
246 |
Q |
| |
|
|||||||||||||||| |||||||| || |||||||||| |
|
|
| T |
6841570 |
atatgagtctttatttgggacgtctcgactgtataatatta |
6841610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 3 - 244
Target Start/End: Original strand, 6596020 - 6596244
Alignment:
| Q |
3 |
cagatagagtttattttgaagctaccgaagttgttaacaaagnnnnnnnnacgtggataggattgtcggcatttattgggttatgccatacactaaggtt |
102 |
Q |
| |
|
||||||| |||||| || ||||||||||||||||||||| | |||||||| |||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
6596020 |
cagatagtgtttatgttcgagctaccgaagttgttaacaaggttttttttacgtggatcggattgtccgcatttattggtttatgccatacactaaggtt |
6596119 |
T |
|
| Q |
103 |
ggttacttggggagtgattgttctcctggaaagaaataagaagccaaaaactccaaaaagtacaaaggagactccgatttgctag-ttttttaaaacttc |
201 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
6596120 |
ggttacttggggagtgattgttttcctggaaagaaataagaagc------------------caaaggagactccgatttgctagtttttttaaaatttc |
6596201 |
T |
|
| Q |
202 |
attactatgagtctttatttgtgacgtctcaaccatataatat |
244 |
Q |
| |
|
||||||||||||||||||||| |||||||| || |||||||| |
|
|
| T |
6596202 |
attactatgagtctttatttgggacgtctcgactgtataatat |
6596244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 6812123 - 6812182
Alignment:
| Q |
139 |
taagaagccaaaaactccaaaaagtacaaaggagactccgatttgctagttttttaaaac |
198 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6812123 |
taagaaggcaaaaactccaaaaattacaaaggagactttgatttgctagttttttaaaac |
6812182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0514 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0514
Description:
Target: scaffold0514; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 22 - 246
Target Start/End: Complemental strand, 371 - 156
Alignment:
| Q |
22 |
agctaccgaagttgttaacaaagnnnnnnnnacgtggataggattgtcggcatttattgggttatgccatacactaaggttggttacttggggagtgatt |
121 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
371 |
agctaccgaagttgttaacaaggttttttttacgtggataggattgtccgcatttattggtttatgccatacactaaggttggttacttggggagtgatt |
272 |
T |
|
| Q |
122 |
gttctcctggaaagaaataagaagccaaaaactccaaaaagtacaaaggagactccgatttgctagttttttaaaacttcattactatgagtctttattt |
221 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
271 |
gttttcctggaaagaaataagaagcca---------aaaagtacaaaggagactcccatttgctagttttttaaaacttcattactatgagtctttattt |
181 |
T |
|
| Q |
222 |
gtgacgtctcaaccatataatatta |
246 |
Q |
| |
|
| |||||||| ||||||||| |||| |
|
|
| T |
180 |
gggacgtctcgaccatataaaatta |
156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University